| 1 | /*ARBDB ASCII*/ |
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| 2 | species_data %% (% |
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| 3 | species %% (% |
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| 4 | ali_16s %% (% |
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| 5 | data :7000 ".........AUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAGCACAGAGGAGCUUGCUCCUCGGGUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGGAUCUGCCCGGUAGAGGGGGAUAACCACUGGAAACGGUGGCUAAUACCGCAUAAUCUCGCAAGAGCAAAGUGGGGGACCUUCGGGCCUCACACUACCGGAUGAACCCAGAUGGGAUUAGCCAGCUGGUGAGGUAACGGCUCACCAGGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGUGAAGAGCGAAUAACUUUUCACAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUCUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCCGGGAACUGCAUUUGAAACUGGCAGGCUUGAGUCUCGUAGAGGGGGGUGGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGAUUUGGAGGCUGUGAGCUUGACUCGUGGCUUCCGUAGCUAACGCGUUAAAUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAUCGGGCAGAGAUGCCUGAGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGAUUCGG-UCGGGAACUCAAAGGAGACUGCCGGUGAUAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUCGGAGUCUGCAACCCGACUCCGUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUA" |
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| 6 | %) /*ali_16s*/ |
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| 7 | |
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| 8 | name :7600 "ErwOleae" |
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| 9 | full_name "Erwinia oleae" |
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| 10 | acc "GU810925" |
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| 11 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Erwinia;" |
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| 12 | start %i 1 |
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| 13 | stop %i 1494 |
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| 14 | version %i 1 |
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| 15 | tax_embl "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Erwiniaceae;Erwinia;" |
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| 16 | tax_embl_name "Erwinia oleae" |
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| 17 | tax_greengenes "k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;g__Erwinia;s__oleae;" |
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| 18 | tax_greengenes_name "Erwinia oleae" |
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| 19 | tax_ltp "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Erwiniaceae;Erwinia" |
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| 20 | tax_ltp_name "Erwinia oleae" |
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| 21 | tax_rdp "Bacteria;\"Proteobacteria\";Gammaproteobacteria;\"Enterobacteriales\";Enterobacteriaceae;Erwinia;" |
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| 22 | tax_rdp_name "Erwinia oleae" |
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| 23 | align_bp_score_slv %i 120 |
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| 24 | align_cutoff_head_slv %i 0 |
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| 25 | align_cutoff_tail_slv %i 0 |
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| 26 | align_ident_slv %f 94.846054 |
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| 27 | align_quality_slv %i 97 |
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| 28 | aligned_slv "2018-03-21 15:49:39" |
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| 29 | ambig_slv %f 0 |
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| 30 | ann_src_slv "EMBL; RDP; RNAmmer;" |
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| 31 | author "Moretti C.; Hosni T.; Vandemeulebroecke K.; Brady C.; De Vos P.; Buonaurio R.; Cleenwerck I.; ; " |
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| 32 | culture_collection "LMG:25322" |
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| 33 | date "2010-06-27; 2013-12-12;" |
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| 34 | description "Erwinia oleae strain DAPP-PG 531 16S ribosomal RNA gene, partial sequence." |
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| 35 | embl_class "Standard" |
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| 36 | embl_division "Prokaryotes" |
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| 37 | homop_slv %f 0.4 |
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| 38 | homop_events_slv %i 5 |
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| 39 | journal "Int. J. Syst. Evol. Microbiol. 61:2745-2752 (2011)" |
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| 40 | nuc_gene_slv %i 1494 |
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| 41 | nuc_region "1..1494" |
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| 42 | nuc_rp "1-1494" |
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| 43 | pintail_slv %i 100 |
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| 44 | pcr_primers "fwd_name: 16F27, fwd_seq: agagtttgatcctggctcag, rev_name: 16R1522, rev_seq: aaggaggtgatccagccgca" |
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| 45 | pubmed_id "21186287" |
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| 46 | seq_quality_slv %i 93 |
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| 47 | strain "DAPP-PG 531 l[T] r[T] s[T]" |
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| 48 | submit_author "Moretti C.; Hosni T.; Vandemeulebroecke K.; De Vos P.; Buonaurio R.; Cleenwerck I.; ; " |
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| 49 | submit_date "15-FEB-2010 Dipartimento Scienze Agrarie e Ambientali, Universita degli Studi di Perugia, Borgo XX Giugno 74, Perugia, Perugia 06121, Italy" |
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| 50 | tax_xref_embl "796334" |
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| 51 | title "Erwinia oleae sp. nov., isolated from olive knots caused by Pseudomonas savastanoi pv. savastanoi" |
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| 52 | vector_slv %f 0 |
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| 53 | ARB_color %i 12 |
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| 54 | fullname_ltp "Erwinia oleae" |
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| 55 | hi_tax_ltp "Erwiniaceae" |
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| 56 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales/Erwiniaceae" |
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| 57 | rel_ltp "s108" |
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| 58 | url_lpsn_ltp "http://www.bacterio.net/erwinia.html" |
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| 59 | align_family_slv "AJ508775.1:0.94 AF530476.1:0.93 AB519796.1:0.92 AF366378.1:0.9 FR729477.2849087:0.9 AF366380.1:0.9 AJ627597.1:0.9 AF366379.1:0.9 AF366375.1:0.9 AF366377.1:0.9 AF366381.1:0.9 AF366376.1:0.9 AF366383.1:0.89 AM182404.1:0.89 AF366384.1:0.89 EF488079.1:0.87 AJ316181.1:0.87 GU929924.1:0.87 FJ009624.1:0.86 AB428909.1:0.86 AB428897.1:0.86 AJ345063.1:0.86 X99762.1:0.86 AJ630103.7:0.86 DQ451211.1:0.86 LC004912.1:0.86 KM099166.1:0.86 JQ434120.1:0.86 AJ421444.1:0.86 KF487035.1:0.85 AF388386.1:0.85 GU929925.1:0.85 JF316656.1:0.85 X99761.1:0.85 GU078672.1:0.85 JQ434105.1:0.85 AJ316171.1:0.85 KP342514.1:0.85 X76335.1:0.85 X76337.1:0.85 " |
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| 60 | align_filter_slv "" |
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| 61 | align_log_slv "scoring: raw=-4041.98, weight=-4136.19, query-len=1494, aligned-bases=1494, score=0.977221; " |
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| 62 | align_startpos_slv %i 1043 |
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| 63 | align_stoppos_slv %i 43255 |
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| 64 | nuc %i 1494 |
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| 65 | turn_slv "none" |
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| 66 | riskgroup_ltp "1" |
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| 67 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales/Erwiniaceae" |
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| 68 | %) /*species*/ |
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| 69 | |
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| 70 | species %% (% |
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| 71 | ali_16s %% (% |
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| 72 | data :7000 "..............ACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAGCAGAAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCCGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCUUCGGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUGAGGUUAAUAACCUCANUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUCUGUCAAGUCGGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUUCGAAACUGGCAGGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCUACUUGGAGGCUGUGGUCUUGAACCGUGGCUUCCGGAGCUAACGCGUUAAGUAGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACUCUUGACAUCCAGAGAACUUAGCAGAGAUGCUUUGGUGCCUUCGGGAACUCUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGG-CCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUG................." |
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| 73 | %) /*ali_16s*/ |
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| 74 | |
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| 75 | name :7600 "PurGergo" |
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| 76 | full_name "Pluralibacter gergoviae" |
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| 77 | acc "AB004748" |
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| 78 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Pluralibacter;" |
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| 79 | start %i 1 |
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| 80 | stop %i 1450 |
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| 81 | version %i 1 |
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| 82 | tax_embl "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Enterobacteriaceae;Pluralibacter;" |
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| 83 | tax_embl_name "Pluralibacter gergoviae" |
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| 84 | tax_greengenes "k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;" |
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| 85 | tax_greengenes_name "Pluralibacter gergoviae" |
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| 86 | tax_ltp "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Pluralibacter" |
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| 87 | tax_ltp_name "Pluralibacter gergoviae" |
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| 88 | tax_rdp "Bacteria;\"Proteobacteria\";Gammaproteobacteria;\"Enterobacteriales\";Enterobacteriaceae;Pluralibacter;" |
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| 89 | tax_rdp_name "Pluralibacter gergoviae" |
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| 90 | align_bp_score_slv %i 117 |
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| 91 | align_cutoff_head_slv %i 0 |
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| 92 | align_cutoff_tail_slv %i 0 |
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| 93 | align_ident_slv %f 97.172417 |
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| 94 | align_quality_slv %i 99 |
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| 95 | aligned_slv "2018-03-21 15:49:26" |
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| 96 | ambig_slv %f 0.07 |
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| 97 | ann_src_slv "EMBL; RDP; RNAmmer;" |
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| 98 | author "Harada H.; Oyaizu H.; Ishikawa H.; ; " |
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| 99 | date "1997-06-22; 2008-12-13;" |
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| 100 | description "Enterobacter gergoviae gene for 16S ribosomal RNA, partial sequence." |
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| 101 | embl_class "Standard" |
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| 102 | embl_division "Prokaryotes" |
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| 103 | homop_slv %f 0.41 |
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| 104 | homop_events_slv %i 5 |
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| 105 | journal "J. Gen. Appl. Microbiol. 42:17-26 (1996)" |
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| 106 | nuc_gene_slv %i 1450 |
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| 107 | nuc_region "1..1450" |
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| 108 | nuc_rp "1-1450" |
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| 109 | pintail_slv %i 100 |
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| 110 | seq_quality_slv %i 91 |
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| 111 | strain "JCM1234 l[T] r[T] s[T]" |
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| 112 | submit_author "Harada H.; Oyaizu H.; Ishikawa H.; ; " |
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| 113 | submit_date "09-JUN-1997 Contact:Hosami Harada Graduate School of Science, University of Tokyo, Department of Biological Sciences; Hongo, Bunkyo-ku, Tokyo 113, Japan, Bunkyo-ku, Tokyo 113, Japan" |
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| 114 | tax_xref_embl "61647" |
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| 115 | title "A consideration about the origin of aphid intracellular symbiont in connection with gut bacterial flora" |
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| 116 | vector_slv %f 0 |
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| 117 | ARB_color %i 10 |
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| 118 | fullname_ltp "Pluralibacter gergoviae" |
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| 119 | hi_tax_ltp "Enterobacteriaceae" |
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| 120 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales" |
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| 121 | type_ltp "type sp." |
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| 122 | rel_ltp "s93" |
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| 123 | riskgroup_ltp "2" |
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| 124 | url_lpsn_ltp "http://www.bacterio.net/pluralibacter.html" |
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| 125 | align_family_slv "AB519796.1:0.96 AF530476.1:0.96 AJ508775.1:0.96 AF366378.1:0.92 FR729477.2849087:0.92 AF366381.1:0.92 AF366380.1:0.92 AF366379.1:0.92 AF366376.1:0.91 AF366383.1:0.91 AF366384.1:0.91 AM182404.1:0.91 AF366377.1:0.91 AJ627597.1:0.91 AF366375.1:0.91 EF488079.1:0.9 JQ434105.1:0.89 GU929925.1:0.89 AB428909.1:0.89 AB428897.1:0.89 FJ009624.1:0.89 GU929924.1:0.89 X76335.1:0.89 AJ421444.1:0.89 AJ630103.7:0.89 X99762.1:0.89 AJ345063.1:0.89 EF599161.1:0.89 KF487035.1:0.89 KM099166.1:0.89 AB000390.1:0.89 DQ451211.1:0.89 GU078672.1:0.88 AF388386.1:0.88 JQ434120.1:0.88 KP342514.1:0.88 LC004912.1:0.88 JF316656.1:0.88 X99761.1:0.88 AJ316181.1:0.88 " |
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| 126 | align_filter_slv "" |
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| 127 | align_log_slv "scoring: raw=-4066.25, weight=-4083.19, query-len=1450, aligned-bases=1450, score=0.99585; " |
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| 128 | align_startpos_slv %i 1055 |
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| 129 | align_stoppos_slv %i 43096 |
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| 130 | nuc %i 1450 |
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| 131 | turn_slv "none" |
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| 132 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales" |
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| 133 | %) /*species*/ |
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| 134 | |
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| 135 | species %% (% |
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| 136 | ali_16s %% (% |
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| 137 | data :7000 ".........AUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGGCAGCGGGAAGUAGUUUACUACUUUGCCGGCGAGCGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUGACCUCGCAAGAGCAAAGUGGGGGACCUUCGGGCCUCACGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAAUGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUGUGAAGAAGGCCUUCGGGUUGUAAAGCACUUUCAGCGAGGAGGAAGGGUUCAGUGUUAAUAGCACUGAGCAUUGACGUUACUCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGCGCUUAACGUGGGAACUGCAUUUGAAACUGGCAAGCUAGAGUCUUGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACAAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACUCUUGACAUCCACAGAACUUAGCAGAGAUGCUUCGGUGCCUUCGGGAACUGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCACGUAAUGGUGGGAACUCAAGGGAGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGCAGAUACAAAGUGAAGCGAACUCGCGAGAGCAAGCGGACCACAUAAAGUCUGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUAGAUCAGAAUGCUACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGG............" |
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| 138 | %) /*ali_16s*/ |
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| 139 | |
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| 140 | name :7600 "YerKrist" |
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| 141 | full_name "Yersinia kristensenii" |
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| 142 | acc "AF366381" |
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| 143 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Yersinia;" |
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| 144 | start %i 1 |
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| 145 | stop %i 1461 |
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| 146 | version %i 1 |
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| 147 | tax_embl "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Yersiniaceae;Yersinia;" |
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| 148 | tax_embl_name "Yersinia kristensenii" |
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| 149 | tax_greengenes "k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;g__Yersinia;" |
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| 150 | tax_greengenes_name "Yersinia kristensenii" |
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| 151 | tax_ltp "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Yersiniaceae;Yersinia" |
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| 152 | tax_ltp_name "Yersinia kristensenii" |
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| 153 | tax_rdp "Bacteria;\"Proteobacteria\";Gammaproteobacteria;\"Enterobacteriales\";Enterobacteriaceae;Yersinia;" |
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| 154 | tax_rdp_name "Yersinia kristensenii" |
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| 155 | align_bp_score_slv %i 118 |
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| 156 | align_cutoff_head_slv %i 0 |
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| 157 | align_cutoff_tail_slv %i 0 |
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| 158 | align_ident_slv %f 99.247093 |
|---|
| 159 | align_quality_slv %i 99 |
|---|
| 160 | aligned_slv "2018-03-21 15:48:34" |
|---|
| 161 | ambig_slv %f 0 |
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| 162 | ann_src_slv "EMBL; RDP; RNAmmer;" |
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| 163 | author "Kim W.; Song M.-O.; Song W.; Kim K.-J.; Chung S.-I.; Choi C.-S.; Park Y.-H.; ; " |
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| 164 | date "2001-05-09; 2003-10-11;" |
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| 165 | description "Yersinia kristensenii 16S ribosomal RNA gene, partial sequence." |
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| 166 | embl_class "Standard" |
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| 167 | embl_division "Prokaryotes" |
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| 168 | homop_slv %f 0.41 |
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| 169 | homop_events_slv %i 5 |
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| 170 | journal "Antonie Van Leeuwenhoek 83:125-133 (2003)" |
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| 171 | nuc_gene_slv %i 1461 |
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| 172 | nuc_region "1..1461" |
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| 173 | nuc_rp "1-1461" |
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| 174 | pintail_slv %i 95 |
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| 175 | publication_doi "10.1023/A:1023301924932" |
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| 176 | pubmed_id "12785306" |
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| 177 | seq_quality_slv %i 93 |
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| 178 | strain "ATCC 33638 l[T] r[T] s[T]" |
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| 179 | submit_author "Kim W.; ; " |
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| 180 | submit_date "30-MAR-2001 Department of Microbiology, Chung-Ang University College of Medicine, 221 Heuksuk-dong DongJak-gu, Seoul 156-756, Republic of Korea" |
|---|
| 181 | tax_xref_embl "28152" |
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| 182 | title "Comparison of 16S rDNA analysis and rep-PCR genomic fingerprinting for molecular identification of Yersinia pseudotuberculosis" |
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| 183 | vector_slv %f 0 |
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| 184 | ARB_color %i 12 |
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| 185 | fullname_ltp "Yersinia kristensenii" |
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| 186 | hi_tax_ltp "Yersiniaceae" |
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| 187 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales/Yersiniaceae, Hafniaceae and Budviciaceae" |
|---|
| 188 | rel_ltp "s93" |
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| 189 | riskgroup_ltp "2, Z" |
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| 190 | url_lpsn_ltp "http://www.bacterio.net/yersinia.html" |
|---|
| 191 | align_family_slv "AF366384.1:0.99 AF366379.1:0.99 AF366376.1:0.99 AF366380.1:0.99 AF366377.1:0.99 AM182404.1:0.98 AF366383.1:0.98 AF366378.1:0.98 AJ627597.1:0.98 AF366375.1:0.98 FR729477.2849087:0.98 AB519796.1:0.93 AF530476.1:0.93 AJ508775.1:0.92 EF488079.1:0.87 EU144014.1:0.87 GU929924.1:0.86 AJ514916.1:0.86 AB428897.1:0.86 AB428909.1:0.86 KP342514.1:0.86 JF316656.1:0.86 EF032499.1:0.86 X76337.1:0.86 AY426980.1:0.86 X99762.1:0.86 AB000390.1:0.86 FN421434.1:0.86 AY426979.1:0.86 GU929925.1:0.86 JQ434105.1:0.86 LC004912.1:0.86 DQ847123.1:0.86 AF462458.1:0.86 AJ630103.7:0.86 AF388386.1:0.86 X76335.1:0.86 KM099166.1:0.86 AJ421444.1:0.86 KC751062.1:0.86 " |
|---|
| 192 | align_filter_slv "" |
|---|
| 193 | align_log_slv "scoring: raw=-4110.32, weight=-4120.44, query-len=1461, aligned-bases=1461, score=0.997545; " |
|---|
| 194 | align_startpos_slv %i 1043 |
|---|
| 195 | align_stoppos_slv %i 43106 |
|---|
| 196 | nuc %i 1461 |
|---|
| 197 | turn_slv "none" |
|---|
| 198 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales/Yersiniaceae, Hafniaceae and Budviciaceae" |
|---|
| 199 | %) /*species*/ |
|---|
| 200 | |
|---|
| 201 | species %$ (% |
|---|
| 202 | ali_16s %% (% |
|---|
| 203 | data :7000 "...........................GCCUAACACAUGCAAGUCGAGCGGCAGCG-GAAGUAGCUUGCUACUUUGCCGGCGAGCGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCCGAUGGAGGGGGAUAACUACUGGAAACGGUGGCUAAUACCGCAUAACGUCUUCGGACCAAAGUGGGGGACCUUCGGGCCUCACACCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAAUGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUGUGAAGAAGGCCUUCGGGUUGUAAAGCACUUUCAGCGAGGAGGAAGGGUUUGGUGUUAAUAGCACCAUUCAUUGACGUUACUCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGAGCUUAACUUGGGAACUGCAUUUGAAACUGGCAAGCUAGAGUCUUGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACAAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACUCUUGACAUCCACGGAAUUUGCUAGAGAUAGCUUAGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCACGUGAUGGUGGGAACUCAAAGGAGACUGCCGGUGAUAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGCAUAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUAUGUCGUAGUCCGGAUCGGAGUCUGCAACUCGACUCCGUGAAGUCGGAAUCGCUAGUAAUCGUAGAUCAGAAUGCUACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUA" |
|---|
| 204 | %) /*ali_16s*/ |
|---|
| 205 | |
|---|
| 206 | name :7600 "SrrAquat" |
|---|
| 207 | full_name "Serratia aquatilis" |
|---|
| 208 | acc "KT387999" |
|---|
| 209 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Enterobacteriaceae;Serratia;" |
|---|
| 210 | start %i 1 |
|---|
| 211 | stop %i 1454 |
|---|
| 212 | version %i 1 |
|---|
| 213 | tax_embl "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Yersiniaceae;Serratia;" |
|---|
| 214 | tax_embl_name "Serratia aquatilis" |
|---|
| 215 | tax_greengenes "Unclassified;" |
|---|
| 216 | tax_greengenes_name "Serratia aquatilis" |
|---|
| 217 | tax_ltp "Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacteriales;Yersiniaceae;Serratia" |
|---|
| 218 | tax_ltp_name "Serratia aquatilis" |
|---|
| 219 | tax_rdp "Bacteria;\"Proteobacteria\";Gammaproteobacteria;\"Enterobacteriales\";Enterobacteriaceae;Serratia;" |
|---|
| 220 | tax_rdp_name "Serratia aquatilis" |
|---|
| 221 | align_bp_score_slv %i 115 |
|---|
| 222 | align_cutoff_head_slv %i 0 |
|---|
| 223 | align_cutoff_tail_slv %i 0 |
|---|
| 224 | align_ident_slv %f 97.569443 |
|---|
| 225 | align_quality_slv %i 99 |
|---|
| 226 | aligned_slv "2018-03-21 15:48:31" |
|---|
| 227 | ambig_slv %f 0 |
|---|
| 228 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 229 | country "Germany" |
|---|
| 230 | date "2015-11-10; 2016-06-23;" |
|---|
| 231 | description "Serratia sp. 2015-2462-01 16S ribosomal RNA gene, partial sequence." |
|---|
| 232 | embl_class "Standard" |
|---|
| 233 | embl_division "Prokaryotes" |
|---|
| 234 | homop_slv %f 0.41 |
|---|
| 235 | homop_events_slv %i 5 |
|---|
| 236 | isolation_source "water distribution system" |
|---|
| 237 | nuc_gene_slv %i 1454 |
|---|
| 238 | nuc_region "1..1454" |
|---|
| 239 | nuc_rp "1-1454" |
|---|
| 240 | pintail_slv %i 100 |
|---|
| 241 | seq_quality_slv %i 93 |
|---|
| 242 | strain "2015-2462-01 l[T]" |
|---|
| 243 | submit_author "Glaeser S.P.; Kaempfer P.; ; " |
|---|
| 244 | submit_date "12-AUG-2015 Department of Applied Microbiology, Justus-Liebig-University Giessen, Heirich-Buff-Ring 26, Giessen, Hesse 35392, Germany" |
|---|
| 245 | tax_xref_embl "1737515" |
|---|
| 246 | vector_slv %f 0 |
|---|
| 247 | ARB_color %i 12 |
|---|
| 248 | fullname_ltp "Serratia aquatilis" |
|---|
| 249 | hi_tax_ltp "Yersiniaceae" |
|---|
| 250 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales/Yersiniaceae, Hafniaceae and Budviciaceae" |
|---|
| 251 | rel_ltp "s128" |
|---|
| 252 | url_lpsn_ltp "http://www.bacterio.net/serratia.html" |
|---|
| 253 | align_family_slv "FR729477.2849087:0.96 AF366378.1:0.96 AF366379.1:0.95 AF366380.1:0.95 AF366375.1:0.95 AF366381.1:0.95 AF366376.1:0.95 AM182404.1:0.95 AJ627597.1:0.95 AF366384.1:0.95 AF366383.1:0.95 AF366377.1:0.95 AB519796.1:0.93 AF530476.1:0.93 AJ508775.1:0.92 EF488079.1:0.87 GU929924.1:0.86 EU144014.1:0.86 DQ847123.1:0.86 AY257972.1:0.86 AJ514916.1:0.86 AB428909.1:0.86 AB428897.1:0.86 JF316656.1:0.86 X99762.1:0.86 AY426979.1:0.86 X76337.1:0.86 AY426980.1:0.86 LC004912.1:0.86 KC751062.1:0.85 KP342514.1:0.85 KM099166.1:0.85 AB000390.1:0.85 EF032499.1:0.85 GU929925.1:0.85 AF462458.1:0.85 AF388386.1:0.85 AJ316181.1:0.85 X76335.1:0.85 AJ630103.7:0.85 " |
|---|
| 254 | align_filter_slv "" |
|---|
| 255 | align_log_slv "scoring: raw=-4071.28, weight=-4092.84, query-len=1454, aligned-bases=1454, score=0.99473; " |
|---|
| 256 | align_startpos_slv %i 1084 |
|---|
| 257 | align_stoppos_slv %i 43215 |
|---|
| 258 | nuc %i 1454 |
|---|
| 259 | turn_slv "none" |
|---|
| 260 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales/Yersiniaceae, Hafniaceae and Budviciaceae" |
|---|
| 261 | %) /*species*/ |
|---|
| 262 | |
|---|
| 263 | species %% (% |
|---|
| 264 | ali_16s %% (% |
|---|
| 265 | data :7000 "AUGGCUCAGAUUGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAACGGUAAC-AUGAG-UGCUUGCA-C-UUGAUGACGAGUGGCGGACGGGUGAGUAAAGUAUGGGGAUCUGCCGAAUGGAGGGGGACAACAGUUGGAAACGACUGCUAAUACCGCAUAAAGUUGAGAGACCAAAGCAUGGGACCUUCGGGCCAUGCGCCAUUUGAUGAACCCAUAUGGGAUUAGCUAGUUGGUAGGGUAAUGGCUUACCAAGGCGACGAUCUCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGGGAAACCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCGGUGAUGAGGAAGGUGGUGUAUCUAAUAGGUGCAUCAAUUGACGUUAAUUACAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCGAGCGUUAAUCGGAAUGACUGGGCGUAAAGGGCAUGUAGGCGGAUAAUUAAGUUAGGUGUGAAAGCCCUGGGCUCAACCUAGGAAUUGCACUUAAAACUGGUUAACUAGAGUAUUGUAGAGGAAGGUAGAAUUCCACGUGUAGCGGUGAAAUGCGUAGAGAUGUGGAGGAAUACCGGUGGCGAAGGCGGCCUUCUGGACAGAUACUGACGCUGAGAUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGUCGAUUUGGAGUUUGUUGCCCUGAGUGAUGGGCUCCGAAGCUAACGCGAUAAAUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACAGAAUCUUGCAGAGAUGCGGGAGUGCCUUCGGGAACUGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAUCGGUUAGG-CCGGGAACUCAAAGGAGACUGCCGUUGAUAAAGCGGAGGAAGGUGGGGACGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGUAUACAAAGGGAGGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUACGUCUAAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGAAUCAGAAUGUCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCACCAGAAGUAGAUAGCUUAACCUUCGGGAGGGCGUUUACCACGGUGUGGUCCAUGACUGGGGUGAAGUCGUA" |
|---|
| 266 | %) /*ali_16s*/ |
|---|
| 267 | |
|---|
| 268 | name :7600 "GlmApico" |
|---|
| 269 | full_name "Gilliamella apicola" |
|---|
| 270 | acc "JQ936674" |
|---|
| 271 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae;Gilliamella;" |
|---|
| 272 | start %i 1 |
|---|
| 273 | stop %i 1538 |
|---|
| 274 | version %i 2 |
|---|
| 275 | tax_embl "Bacteria;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae;Gilliamella;" |
|---|
| 276 | tax_embl_name "Gilliamella apicola" |
|---|
| 277 | tax_greengenes "k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;" |
|---|
| 278 | tax_greengenes_name "Gilliamella apicola" |
|---|
| 279 | tax_ltp "Bacteria;Proteobacteria;Gammaproteobacteria;Orbales;Orbaceae;Gilliamella" |
|---|
| 280 | tax_ltp_name "Gilliamella apicola" |
|---|
| 281 | tax_rdp "Bacteria;\"Proteobacteria\";Gammaproteobacteria;Orbales;Orbaceae;Gilliamella;" |
|---|
| 282 | tax_rdp_name "Gilliamella apicola" |
|---|
| 283 | align_bp_score_slv %i 119 |
|---|
| 284 | align_cutoff_head_slv %i 0 |
|---|
| 285 | align_cutoff_tail_slv %i 0 |
|---|
| 286 | align_ident_slv %f 89.625168 |
|---|
| 287 | align_quality_slv %i 92 |
|---|
| 288 | aligned_slv "2018-03-21 15:47:52" |
|---|
| 289 | ambig_slv %f 0 |
|---|
| 290 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 291 | author "Kwong W.K.; Moran N.A.; ; " |
|---|
| 292 | collected_by "W. Kwong" |
|---|
| 293 | collection_date "25-May-2011" |
|---|
| 294 | country "USA:West Haven, CT" |
|---|
| 295 | date "2012-08-19; 2013-06-13;" |
|---|
| 296 | description "Gilliamella apicola strain wkB1 16S ribosomal RNA gene, complete sequence." |
|---|
| 297 | embl_class "Standard" |
|---|
| 298 | embl_division "Prokaryotes" |
|---|
| 299 | homop_slv %f 0.2 |
|---|
| 300 | homop_events_slv %i 3 |
|---|
| 301 | host "Apis mellifera" |
|---|
| 302 | identified_by "W. Kwong" |
|---|
| 303 | isolation_source "bee gut" |
|---|
| 304 | journal "Int. J. Syst. Evol. Microbiol. 63:2008-2018 (2013)" |
|---|
| 305 | lat_lon "41.26 N 72.99 W" |
|---|
| 306 | nuc_gene_slv %i 1537 |
|---|
| 307 | nuc_region "1..1538" |
|---|
| 308 | nuc_rp "1-1538" |
|---|
| 309 | pintail_slv %i 100 |
|---|
| 310 | publication_doi "10.1099/ijs.0.044875-0" |
|---|
| 311 | pubmed_id "23041637" |
|---|
| 312 | seq_quality_slv %i 96 |
|---|
| 313 | strain "wkB1 l[T] r[T] s[T]" |
|---|
| 314 | submit_author "Kwong W.; Moran N.A.; ; " |
|---|
| 315 | submit_date "14-APR-2012 Ecology and Evolutionary Biology, Yale University, 21 Sachem Street, New Haven, CT 06520, USA" |
|---|
| 316 | tax_xref_embl "1196095" |
|---|
| 317 | title "Cultivation and characterization of the gut symbionts of honey bees and bumble bees: description of Snodgrassella alvi gen. nov., sp. nov., a member of the family Neisseriaceae of the Betaproteobacteria, and Gilliamella apicola gen. nov., sp. nov., a member of Orbaceae fam. nov., Orbales ord. nov., " |
|---|
| 318 | vector_slv %f 0 |
|---|
| 319 | ARB_color %i 10 |
|---|
| 320 | fullname_ltp "Gilliamella apicola" |
|---|
| 321 | hi_tax_ltp "Orbaceae" |
|---|
| 322 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales/Orbales" |
|---|
| 323 | type_ltp "type sp." |
|---|
| 324 | rel_ltp "s115" |
|---|
| 325 | url_lpsn_ltp "http://www.bacterio.net/gilliamella.html" |
|---|
| 326 | align_family_slv "AJ508775.1:0.87 AM162656.1:0.85 EU143360.1:0.85 AB519796.1:0.85 AM162657.1:0.85 EF599161.1:0.85 DQ922920.1:0.85 EF094888.1:0.85 X76335.1:0.84 AF530476.1:0.84 Y08430.1:0.84 FR729477.2849087:0.84 AY155585.1:0.84 AM182404.1:0.84 EU144014.1:0.84 GU929924.1:0.84 X74705.1:0.84 EF488079.1:0.84 EU541605.1:0.84 EF599164.1:0.84 HE978310.1:0.84 EF599163.1:0.84 KF487035.1:0.84 AF366375.1:0.84 AF366383.1:0.84 AF366377.1:0.84 FJ009624.1:0.84 X74701.1:0.84 DQ922915.1:0.84 AJ627597.1:0.84 AF366381.1:0.84 AF366379.1:0.84 AF366376.1:0.84 AF366384.1:0.84 AF366378.1:0.84 AF366380.1:0.84 AJ630103.7:0.84 JQ434120.1:0.84 DQ914239.1:0.84 FN421434.1:0.84 " |
|---|
| 327 | align_filter_slv "" |
|---|
| 328 | align_log_slv "scoring: raw=-3877.15, weight=-4195.65, query-len=1538, aligned-bases=1538, score=0.924088; " |
|---|
| 329 | align_startpos_slv %i 999 |
|---|
| 330 | align_stoppos_slv %i 43282 |
|---|
| 331 | nuc %i 1538 |
|---|
| 332 | turn_slv "none" |
|---|
| 333 | riskgroup_ltp "1" |
|---|
| 334 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Enterobacterales, Pasteurellales and Orbales/Orbales" |
|---|
| 335 | %) /*species*/ |
|---|
| 336 | |
|---|
| 337 | species %% (% |
|---|
| 338 | ali_16s %% (% |
|---|
| 339 | data :7000 ".........AUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGGAAACGACUGAACCYUCGGGGRACGGGCGUCGAGCGGCGGACGGGUGAGUAAUGCCUGGGAAAUUGCCCUGAUGUGGGGGAUAACCAUUGGAAACGAUGGCUAAUACCGCAUAAUAGCUUCGGCUCAAAGAGGGGGACCUUCGGGCCUCUCGCGUCAGGAUAUGCCCAGGUGGGAUUAGCUAGUUGGUGAGGUAAGGGCUCACCAAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGYMGUGAGGAAGGURGKGKWGUUAAUAGCWSCWUYAUUUGACGUUAGCKRCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGUGUGUUAAGUCAGAUGUGAAAGCCCGGGGCUCAACCUCGGAAUAGCAUUUGAAACUGGCAGACUAGAGUACUGUAGAGGGGGGUAGAAUUUCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGAAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACAGAUACUGACACUCAGAUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCUACUUGGAGGUUGUGGCCUUGAGCCGUGGCUUUCGGAGCUAACGCGUUAAGUAGACCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACUCUUGACAUCCAGAGAACUUUCCAGAGAUGGAUUGGUGCCUUCGGGAACUCUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUGUUUGCCAGCACUUCGG-GUGGGAACUCCAGGGAGACUGCCGGUGAUAAACCGGAGGAAGGUGGGGACGACGUCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGCGCAUACAGAGGGCGGCCAACUUGCGAGAGUGAGCGAAUCCCAAAAAGUGCGUCGUAGUCCGGAUCGGAGUCUGCAACUCGACUCCGUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGCUGCAAAAGAAGUAGGUAGUUUAACCUUCGGGAGGACGCUUACCACUUUGUGGUUCAUGACUGGGGUGAAG....." |
|---|
| 340 | %) /*ali_16s*/ |
|---|
| 341 | |
|---|
| 342 | name :7600 "VibJapon" |
|---|
| 343 | full_name "Vibrio japonicus" |
|---|
| 344 | acc "LC143378" |
|---|
| 345 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio;" |
|---|
| 346 | start %i 1 |
|---|
| 347 | stop %i 1477 |
|---|
| 348 | version %i 1 |
|---|
| 349 | tax_embl "Bacteria;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio;" |
|---|
| 350 | tax_embl_name "Vibrio japonicus" |
|---|
| 351 | tax_greengenes "Unclassified;" |
|---|
| 352 | tax_greengenes_name "Vibrio japonicus" |
|---|
| 353 | tax_ltp "Bacteria;Proteobacteria;Gammaproteobacteria;Vibrionales;Vibrionaceae;Vibrio" |
|---|
| 354 | tax_ltp_name "Vibrio japonicus" |
|---|
| 355 | tax_rdp "Unclassified;" |
|---|
| 356 | tax_rdp_name "Vibrio japonicus" |
|---|
| 357 | align_bp_score_slv %i 116 |
|---|
| 358 | align_cutoff_head_slv %i 0 |
|---|
| 359 | align_cutoff_tail_slv %i 0 |
|---|
| 360 | align_ident_slv %f 99.170128 |
|---|
| 361 | align_quality_slv %i 99 |
|---|
| 362 | aligned_slv "2018-03-21 15:46:46" |
|---|
| 363 | ambig_slv %f 1.22 |
|---|
| 364 | ann_src_slv "EMBL; RNAmmer;" |
|---|
| 365 | author "Doi H.; Osawa I.; Adachi H.; Kawada M.; ; " |
|---|
| 366 | collected_by "Hiroyasu Doi" |
|---|
| 367 | collection_date "2013-10-09" |
|---|
| 368 | country "Japan:Hyogo, Ako" |
|---|
| 369 | date "2016-04-07; 2017-03-01;" |
|---|
| 370 | description "Vibrio japonicus gene for 16S ribosomal RNA, partial sequence." |
|---|
| 371 | embl_class "Standard" |
|---|
| 372 | embl_division "Prokaryotes" |
|---|
| 373 | homop_slv %f 0.47 |
|---|
| 374 | homop_events_slv %i 6 |
|---|
| 375 | isolation_source "sea water" |
|---|
| 376 | journal "PLoS One 12:e0172164-e0172164 (2017)" |
|---|
| 377 | lat_lon "34.75 N 134.38 E" |
|---|
| 378 | nuc_gene_slv %i 1477 |
|---|
| 379 | nuc_region "1..1477" |
|---|
| 380 | nuc_rp "1-1477" |
|---|
| 381 | pintail_slv %i 95 |
|---|
| 382 | pubmed_id "28231272" |
|---|
| 383 | seq_quality_slv %i 71 |
|---|
| 384 | strain "Bio7-2" |
|---|
| 385 | submit_author "Doi H.; ; " |
|---|
| 386 | submit_date "31-MAR-2016 Contact:Hiroyasu Doi Institute of Microbial Chemistry, Numazu Branch; 18-24 Miyamoto, Numazu, Shizuoka 410-0301, Japan URL :http://bikaken.or.jp" |
|---|
| 387 | tax_xref_embl "1824638" |
|---|
| 388 | title "Vibrio japonicus sp. nov., a novel member of the Nereis clade in the genus Vibrio isolated from the coast of Japan" |
|---|
| 389 | vector_slv %f 0 |
|---|
| 390 | rel_ltp "s132" |
|---|
| 391 | fullname_ltp "Vibrio japonicus" |
|---|
| 392 | ARB_color %i 12 |
|---|
| 393 | align_family_slv "AJ316181.1:0.98 AJ345063.1:0.98 X74723.1:0.97 X99762.1:0.97 DQ451211.1:0.97 AB428897.1:0.97 FJ009624.1:0.97 X99761.1:0.96 GU078672.1:0.96 AB428909.1:0.96 LC004912.1:0.96 KM099166.1:0.96 AF388386.1:0.96 JF316656.1:0.96 AJ316171.1:0.96 GU929925.1:0.96 X76335.1:0.96 AJ421444.1:0.96 JQ434120.1:0.95 X74717.1:0.95 GU929924.1:0.95 EU143360.1:0.95 X74716.1:0.95 KP342514.1:0.95 AJ630103.7:0.95 AJ316194.1:0.95 JQ434105.1:0.95 AB013297.1:0.95 EF599161.1:0.95 KF487035.1:0.95 X74701.1:0.95 Y08430.1:0.94 KC751062.1:0.94 AY155585.1:0.94 AJ514916.1:0.94 Y13830.1:0.94 AY426979.1:0.94 AY426980.1:0.94 DQ922915.1:0.94 AY254040.1:0.94 " |
|---|
| 394 | align_filter_slv "" |
|---|
| 395 | align_log_slv "scoring: raw=-4251.85, weight=-4255.1, query-len=1477, aligned-bases=1477, score=0.999236; " |
|---|
| 396 | align_startpos_slv %i 1043 |
|---|
| 397 | align_stoppos_slv %i 43182 |
|---|
| 398 | nuc %i 1477 |
|---|
| 399 | turn_slv "none" |
|---|
| 400 | hi_tax_ltp "Vibrionaceae" |
|---|
| 401 | url_lpsn_ltp "http://www.bacterio.net/vibrio.html" |
|---|
| 402 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Vibrionaceae" |
|---|
| 403 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Vibrionaceae" |
|---|
| 404 | %) /*species*/ |
|---|
| 405 | |
|---|
| 406 | species %$ (% |
|---|
| 407 | ali_16s %% (% |
|---|
| 408 | data :7000 "AUGGCUCAGAUUGAACGCUGGCGGUAUGCUUAACACAUGCAAGUCGAACGGUAGCAG---G-CCUUCGGG-C---GCUGACGAGUGGCGGACGGGUGAGUAAUGCAUAGGAAUCUGCCUCAUAGUGGGGGAUAACGUGGGGAAACUCACGCUAAUACCGCAUACGACCUACGGGUGAAAGCGGGGGACCUUCGGGCCUCGCGCUAUGAGAUGAGCCUAUGUUGGAUUAGCUAGUUGGUAGGGUAAUGGCCUACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGGAAGCCUGAUCCAGCAAUACCGCGUGUGUGAAGAAGGCCUGAGGGUUGUAAAGCACUUUCAAUGGGAAGGAAUACCUAUCGGCGAAUACCCGGUAGA-CUGACAUUACCCAUACAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGUGCGUAGGCGGUGAUUUAAGUCAGAUGUGAAAGCCCUGGGCUUAACCUGGGAACUGCAUUUGAUACUGGGUCACUAGAGUUGAGUAGAGGAGAGUGGAAUUUCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGAAGGAACACCAGUGGCGAAGGCGGCUCUCUGGACUCAAACUGACGCUGAGGUACGAAAGCGUGGGUAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCAACUAACCGUUGGGUUCUUAAAGAACUUAGUGGUGGAGCUAACGUAUUAAGUUGACCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACCCUUGACAUCCAGAGAAUCUGUUAGAGAUAGCGGAGUGCCUUCGGGAACUCUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGUAACGAGCGCAACCCUUAUCCUUAGUUGCCAACAGUUCGG-CUGGGAACUCUAGGGAGACUGCCGGUGAUAAACCGGAGGAAGGUGGGGACGACGUCAAGUCAUCAUGGCCCUUAUGGGUAGGGCUACACACGUGCUACAAUGGCCGGUACAGAGGGCAGCAAACUCGCGAGAGCCAGCAAAUCCCAAAAAGCCGGUCCUAGUCCGGAUUGCAGUCUGCAACUCGACUGCAUGAAGUCGGAAUCGCUAGUAAUCGCGGAUCAGAAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGUUUAACCUUCGGGAGGGCGC....................................." |
|---|
| 409 | %) /*ali_16s*/ |
|---|
| 410 | |
|---|
| 411 | name :7600 "MhyPalud" |
|---|
| 412 | full_name "Methylomonas paludis" |
|---|
| 413 | acc "HE801216" |
|---|
| 414 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Methylococcales;Methylomonaceae;Methylomonas;" |
|---|
| 415 | start %i 1 |
|---|
| 416 | stop %i 1435 |
|---|
| 417 | version %i 1 |
|---|
| 418 | tax_embl "Bacteria;Proteobacteria;Gammaproteobacteria;Methylococcales;Methylococcaceae;Methylomonas;" |
|---|
| 419 | tax_embl_name "Methylomonas paludis" |
|---|
| 420 | tax_greengenes "k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__Methylomonas;" |
|---|
| 421 | tax_greengenes_name "Methylomonas paludis" |
|---|
| 422 | tax_ltp "Bacteria;Proteobacteria;Gammaproteobacteria;Methylococcales;Methylococcaceae;Methylomonas" |
|---|
| 423 | tax_ltp_name "Methylomonas paludis" |
|---|
| 424 | tax_rdp "Bacteria;\"Proteobacteria\";Gammaproteobacteria;Methylococcales;Methylococcaceae;Methylomonas;" |
|---|
| 425 | tax_rdp_name "Methylomonas paludis" |
|---|
| 426 | align_bp_score_slv %i 112 |
|---|
| 427 | align_cutoff_head_slv %i 0 |
|---|
| 428 | align_cutoff_tail_slv %i 0 |
|---|
| 429 | align_ident_slv %f 87.470451 |
|---|
| 430 | align_quality_slv %i 92 |
|---|
| 431 | aligned_slv "2018-03-21 15:43:51" |
|---|
| 432 | ambig_slv %f 0 |
|---|
| 433 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 434 | author "Danilova O.V.; Kulichevskaya I.S.; Rozova O.N.; Detkova E.N.; Bodelier P.L.; Trotsenko Y.A.; Dedysh S.N.; ; " |
|---|
| 435 | country "Russia:Karelia, Valaam, bank of the peat bog lake Germanovskoe" |
|---|
| 436 | date "2012-04-13; 2015-10-01;" |
|---|
| 437 | description "Methylomonas paludis partial 16S rRNA gene, type strain DSM 24973T" |
|---|
| 438 | embl_class "Standard" |
|---|
| 439 | embl_division "Prokaryotes" |
|---|
| 440 | gene "16S rRNA" |
|---|
| 441 | homop_slv %f 0.28 |
|---|
| 442 | homop_events_slv %i 4 |
|---|
| 443 | isolation_source "Sphagnum peat" |
|---|
| 444 | journal "Int. J. Syst. Evol. Microbiol. 63:2282-2289 (2013)" |
|---|
| 445 | lat_lon "61.22 N 31.07 E" |
|---|
| 446 | nuc_gene_slv %i 1435 |
|---|
| 447 | nuc_region "1..1435" |
|---|
| 448 | nuc_rp "1-1435" |
|---|
| 449 | pintail_slv %i 100 |
|---|
| 450 | publication_doi "10.1099/ijs.0.045658-0" |
|---|
| 451 | pubmed_id "23159751" |
|---|
| 452 | seq_quality_slv %i 95 |
|---|
| 453 | strain "type strain: DSM 24973 l[T] r[T] s[T]" |
|---|
| 454 | submit_author "Dedysh S.; ; " |
|---|
| 455 | submit_date "06-APR-2012 Winogradsky Institute of Microbiology, Department of Microbial Communities, Prospect 60-Letya Octyabrya 7/2, Moscow, 117312, RUSSIA." |
|---|
| 456 | tax_xref_embl "1173101" |
|---|
| 457 | title "Methylomonas paludis sp. nov., the first acid-tolerant member of the genus Methylomonas, from an acidic wetland" |
|---|
| 458 | vector_slv %f 0 |
|---|
| 459 | ARB_color %i 12 |
|---|
| 460 | fullname_ltp "Methylomonas paludis" |
|---|
| 461 | hi_tax_ltp "Methylococcaceae" |
|---|
| 462 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Other Methylococcales" |
|---|
| 463 | rel_ltp "s115" |
|---|
| 464 | url_lpsn_ltp "http://www.bacterio.net/methylomonas.html" |
|---|
| 465 | align_family_slv "AB013297.1:0.83 FJ968722.1:0.83 DQ097523.1:0.83 LN846833.1:0.83 JQ434120.1:0.82 GU078672.1:0.82 EF032499.1:0.82 X76337.1:0.82 AJ345063.1:0.82 LC004912.1:0.81 AY257972.1:0.81 JF316656.1:0.81 AF388386.1:0.81 AJ421444.1:0.81 AJ316194.1:0.81 GU929924.1:0.81 X74713.1:0.81 Y08430.1:0.81 X99762.1:0.81 AJ316181.1:0.81 X74698.1:0.81 AB428897.1:0.81 AB428909.1:0.81 AM162656.1:0.81 KM099166.1:0.81 FJ009624.1:0.81 EU144014.1:0.81 AY426979.1:0.81 AY155585.1:0.81 X76335.1:0.81 JQ434105.1:0.8 AJ514916.1:0.8 AY426980.1:0.8 KP342514.1:0.8 EF599161.1:0.8 GU929925.1:0.8 AM162657.1:0.8 EF488079.1:0.8 AB000390.1:0.8 DQ922915.1:0.8 " |
|---|
| 466 | align_filter_slv "" |
|---|
| 467 | align_log_slv "scoring: raw=-3642.42, weight=-3931.15, query-len=1435, aligned-bases=1435, score=0.926555; " |
|---|
| 468 | align_startpos_slv %i 1026 |
|---|
| 469 | align_stoppos_slv %i 43009 |
|---|
| 470 | nuc %i 1435 |
|---|
| 471 | turn_slv "none" |
|---|
| 472 | riskgroup_ltp "1" |
|---|
| 473 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Other Methylococcales" |
|---|
| 474 | %) /*species*/ |
|---|
| 475 | |
|---|
| 476 | species %% (% |
|---|
| 477 | ali_16s %% (% |
|---|
| 478 | data :7000 "CUGGCUCAGAUUGAACGCUGGCGGCAUGCCUUACACAUGCAAGUCGAACGGCAGCAC---GGGGGCAACCCU---GGUGGCGAGUGGCGAACGGGUGAGUAAUACAUCGGAACGUGUCCUGUAGUGGGGGAUAGCCCGGCGAAAGCCGGAUUAAUACCGCAUACGACCUAAGGGAGAAAGCGGGGGAUCUUCGGACCUCGCGCUAUAGGGGCGGCCGAUGGCAGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCUGUAGCUGGUCUGAGAGGACGACCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUUUUGGACAAUGGGGGCAACCCUGAUCCAGCAAUGCCGCGUGUGUGAAGAAGGCCUUCGGGUUGUAAAGCACUUUUGUCCGGAAAGAAAACUUCGCCGCUAAUAUCGGUGGAGGAUGACGGUACCGGAAGAAUAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCGAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGUGCGCAGGCGGUCUGUUAAGACCGAUGUGAAAUCCCCGGGCUUAACCUGGGAACUGCAUUGGUGACUGGCAGGCUUGAGUGUGGCAGAGGGAGGUAGAAUUCCACGUGUAGCAGUGAAAUGCGUAGAGAUGUGGAGGAAUACCGAUGGCGAAGGCAGCCUCCUGGGCCAACACUGACGCUCAUGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCCUAAACGAUGUCAACUAGUUGUUGGGGAU-UCAUUUCCUUAGUAACGUAGCUAACGCGUGAAGUUGACCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGACCCGCACAAGCGGUGGAUGAUGUGGAUUAAUUCGAUGCAACGCGAAAAACCUUACCUACCCUUGACAUGGUCGGAAUCCUGCUGAGAGGCGGGAGUGUCGAAAGAAACCGGCGCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUCCUUAGUUGCUA-C--GCAA--A---GCACUCUAAGGAGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGGGUAGGGCUUCACACGUCAUACAAUGGUCGGAACAGAGGGUUGCCAAGCCGCGAGGUGGAGCCAAUCCCAGAAAACCGAUCGUAGUCCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGCUGGAAUCGCUAGUAAUCGCGGAUCAG-AUGCCGCGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUUCACCAGAAGUAGGUAGCCUAACCGCAAGGAGGGCGCUUACCACGGUGGGAUUCAUGACUGGGGUGAAGUCGUA" |
|---|
| 479 | %) /*ali_16s*/ |
|---|
| 480 | |
|---|
| 481 | name :7600 "BurCalid" |
|---|
| 482 | full_name "Burkholderia calidae" |
|---|
| 483 | acc "FCOX02000168" |
|---|
| 484 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Betaproteobacteriales;Burkholderiaceae;Burkholderia-Caballeronia-Paraburkholderia;" |
|---|
| 485 | start %i 137 |
|---|
| 486 | stop %i 1665 |
|---|
| 487 | version %i 1 |
|---|
| 488 | tax_embl "Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Burkholderia;" |
|---|
| 489 | tax_embl_name "Burkholderia calidae" |
|---|
| 490 | tax_greengenes "Unclassified;" |
|---|
| 491 | tax_greengenes_name "Burkholderia calidae" |
|---|
| 492 | tax_ltp "Bacteria;Proteobacteria;Betaproteobacteria;Burkholderiales;Burkholderiaceae;Burkholderia" |
|---|
| 493 | tax_ltp_name "Burkholderia calidae" |
|---|
| 494 | tax_rdp "Unclassified;" |
|---|
| 495 | tax_rdp_name "Burkholderia calidae" |
|---|
| 496 | align_bp_score_slv %i 121 |
|---|
| 497 | align_cutoff_head_slv %i 0 |
|---|
| 498 | align_cutoff_tail_slv %i 0 |
|---|
| 499 | align_ident_slv %f 89.498642 |
|---|
| 500 | align_quality_slv %i 97 |
|---|
| 501 | aligned_slv "2018-03-21 15:36:43" |
|---|
| 502 | ambig_slv %f 0 |
|---|
| 503 | ann_src_slv "EMBL; RNAmmer;" |
|---|
| 504 | collection_date "2013" |
|---|
| 505 | date "2016-04-15; 2016-11-22;" |
|---|
| 506 | description "Burkholderia calidae type strain LMG 29321 genome assembly, contig: contig000168" |
|---|
| 507 | embl_class "Whole Genome Shotgun" |
|---|
| 508 | embl_division "Prokaryotes" |
|---|
| 509 | homop_slv %f 0.33 |
|---|
| 510 | homop_events_slv %i 5 |
|---|
| 511 | insdc %i 12490 |
|---|
| 512 | isolate "LMG 29321" |
|---|
| 513 | isolation_source "water" |
|---|
| 514 | nuc_gene_slv %i 1528 |
|---|
| 515 | nuc_region "137..1665" |
|---|
| 516 | pintail_slv %i 100 |
|---|
| 517 | seq_quality_slv %i 94 |
|---|
| 518 | submit_author "Peeters C.; ; " |
|---|
| 519 | submit_date "26-JAN-2016 LM-UGent, Laboratory of Microbiology, Ghent University, K. L. Ledeganckstraat 35, 9000 Gent, 9000, Belgium" |
|---|
| 520 | tax_xref_embl "1777139" |
|---|
| 521 | vector_slv %f 0 |
|---|
| 522 | rel_ltp "s132" |
|---|
| 523 | fullname_ltp "Burkholderia calidae" |
|---|
| 524 | ARB_color %i 12 |
|---|
| 525 | align_family_slv "FJ425909.1:0.9 AJ011506.1:0.87 AB201043.1:0.87 DQ413148.1:0.86 AJ420330.1:0.86 KX602193.1:0.85 AF208315.1:0.76 FR749910.1:0.76 FR733718.1:0.76 FR749942.1:0.76 X95918.1:0.76 GU993265.1:0.75 Y10754.1:0.75 Y10756.1:0.75 Y10755.1:0.75 X95921.1:0.75 Y10757.1:0.75 Y10762.1:0.75 Y10759.1:0.75 X95919.1:0.75 Y10758.1:0.75 X95920.1:0.75 Y10760.1:0.75 Y10763.1:0.75 AF192343.1:0.75 Y10766.1:0.75 Y10765.1:0.75 Y10764.1:0.75 LN846833.1:0.74 JQ955625.1:0.74 X95922.1:0.74 AE008922.4561295:0.73 X94198.1:0.73 X99469.1:0.73 X94201.1:0.73 X94199.1:0.73 AF399970.1:0.73 AF399969.1:0.72 FJ968722.1:0.72 X74698.1:0.71 " |
|---|
| 526 | align_filter_slv "" |
|---|
| 527 | align_log_slv "total inserted bases=1;longest insertion=1;total inserted bases before shifting=1;scoring: raw=-3920.35, weight=-4011.45, query-len=1529, aligned-bases=1529, score=0.977291; " |
|---|
| 528 | align_startpos_slv %i 1002 |
|---|
| 529 | align_stoppos_slv %i 43282 |
|---|
| 530 | nuc %i 1529 |
|---|
| 531 | turn_slv "none" |
|---|
| 532 | hi_tax_ltp "Burkholderiaceae" |
|---|
| 533 | url_lpsn_ltp "http://www.bacterio.net/burkholderia.html" |
|---|
| 534 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Betaproteobacteria/Burkholderiales/Burkholderiaceae" |
|---|
| 535 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Betaproteobacteria/Burkholderiales/Burkholderiaceae" |
|---|
| 536 | %) /*species*/ |
|---|
| 537 | |
|---|
| 538 | species %% (% |
|---|
| 539 | ali_16s %% (% |
|---|
| 540 | data :7000 ".........AUUGAACGCUGGCGGCAUGCUUUACACAUGCAAGUCGAACGGCAGCGGGGAAGUGCUUGCACUUCUGCCGGCGAGUGGCGAACGGGUGAGUAAUAUAUCGGAACGUACCGAAUAGUGGGGGAUAACUGUCCGAAAGGAUGGCUAAUACCGCAUACGUCUUGAGAGAGAAAGUGGGGGCUCGCAAGGCCUCACGCUAUUUGAGCGGCCGAUAACUGAUUAGCUGGUUGGUGGGGUAAGAGCCCACCAAGGCGACGAUCAGUAGCGGGUCUGAGAGGAUGAUCCGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUUUUGGACAAUGGGGGCAACCCUGAUCCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUUGUCGGGGAAGAAAAGGUUAGUGUUAAUACCACUGACUGAUGACGGUACCCGAAGAAUAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGGGCGCAGACGGUUACAUAAGUCAGGUGUGAAAUCCCCGAGCUCAACUUGGGAAUGGCGCUUGAAACUGUGUAGCUAGAGUGUGUCAGAGGGAGGUAGAAUUCCGCGUGUAGCAGUGAAAUGCGUAGAGAUGCGGAGGAAUACCGAUGGCGAAGGCAGCCUCCUGGGAUAACACUGACGUACAUGCCCGAAAGCGUGGGUAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCCUAAACGAUGACAAUUAGCUGUUGGUGUGCUUGCACAUU-AGUAGCGAAGCUAACGCGUGAAAUUGUCCGCCUGGGGAGUACGGUCGCAAAAUUAAAACUCAAAGGAAUUGACGGGGACCCGCACAAGCGGUGGAUGAUGUGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUGUACGGAAUCUUUCAGAGACGGAAGAGUGCCUUCGGGAGCCGUAACACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUCAUUAGUUGCCAUCAU-UUG--UUGGGCACUCUAAUGAGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUAUGACCAGGGCUUCACACGUCAUACAAUGGUCGGUACAGAGGGUAGCCAAGCCGCGAGGCGGAGCCAAUCUCAGAAAGCCGAUCGUAGUCCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUCGGAAUCGCUAGUAAUCGCAGGUCAG-AUACUGCGGUGAAUACGUUCCCGGGUCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGGGAUACCAGAAUUGGGUAGGCUAACCGCAAGGAGGCCGCUUAACACGGUAUGCUUCAUGACUGGGGUGAAGUCGUA" |
|---|
| 541 | %) /*ali_16s*/ |
|---|
| 542 | |
|---|
| 543 | name :7600 "StxAceti" |
|---|
| 544 | full_name "Stenoxybacter acetivorans" |
|---|
| 545 | acc "EF212897" |
|---|
| 546 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Betaproteobacteriales;Neisseriaceae;Stenoxybacter;" |
|---|
| 547 | start %i 1 |
|---|
| 548 | stop %i 1484 |
|---|
| 549 | version %i 1 |
|---|
| 550 | tax_embl "Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Stenoxybacter;" |
|---|
| 551 | tax_embl_name "Stenoxybacter acetivorans" |
|---|
| 552 | tax_greengenes "k__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;" |
|---|
| 553 | tax_greengenes_name "Stenoxybacter acetivorans" |
|---|
| 554 | tax_ltp "Bacteria;Proteobacteria;Betaproteobacteria;Neisseriales;Neisseriaceae;Stenoxybacter" |
|---|
| 555 | tax_ltp_name "Stenoxybacter acetivorans" |
|---|
| 556 | tax_rdp "Bacteria;\"Proteobacteria\";Betaproteobacteria;Neisseriales;Neisseriaceae;Stenoxybacter;" |
|---|
| 557 | tax_rdp_name "Stenoxybacter acetivorans" |
|---|
| 558 | align_bp_score_slv %i 117 |
|---|
| 559 | align_cutoff_head_slv %i 0 |
|---|
| 560 | align_cutoff_tail_slv %i 0 |
|---|
| 561 | align_ident_slv %f 87.339195 |
|---|
| 562 | align_quality_slv %i 93 |
|---|
| 563 | aligned_slv "2018-03-21 15:34:03" |
|---|
| 564 | ambig_slv %f 0 |
|---|
| 565 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 566 | author "Wertz J.T.; Breznak J.A.; ; " |
|---|
| 567 | date "2007-02-06; 2007-11-01;" |
|---|
| 568 | description "Stenoxybacter acetivorans strain TAM-DN1 16S ribosomal RNA gene, partial sequence." |
|---|
| 569 | embl_class "Standard" |
|---|
| 570 | embl_division "Prokaryotes" |
|---|
| 571 | habitat_slv "termite gut" |
|---|
| 572 | homop_slv %f 0.27 |
|---|
| 573 | homop_events_slv %i 4 |
|---|
| 574 | host "Termite" |
|---|
| 575 | isolation_source "termite" |
|---|
| 576 | journal "Appl. Environ. Microbiol. 73:6819-6828 (2007)" |
|---|
| 577 | nuc_gene_slv %i 1484 |
|---|
| 578 | nuc_region "1..1484" |
|---|
| 579 | nuc_rp "1-1484" |
|---|
| 580 | pintail_slv %i 100 |
|---|
| 581 | publication_doi "10.1128/AEM.00786-07" |
|---|
| 582 | pubmed_id "17827334" |
|---|
| 583 | seq_quality_slv %i 95 |
|---|
| 584 | strain "TAM-DN1 l[T] r[T] s[T]" |
|---|
| 585 | submit_author "Wertz J.T.; Breznak J.A.; ; " |
|---|
| 586 | submit_date "09-JAN-2007 Microbiology and Molecular Genetics, Michigan State University, 2209 Biomedical Physical Sciences, East Lansing, MI 48824, USA" |
|---|
| 587 | tax_xref_embl "422441" |
|---|
| 588 | title "Stenoxybacter acetivorans gen. nov., sp. nov., an acetate-oxidizing obligate microaerophile among diverse O2-consuming bacteria from termite guts" |
|---|
| 589 | vector_slv %f 0 |
|---|
| 590 | ARB_color %i 10 |
|---|
| 591 | fullname_ltp "Stenoxybacter acetivorans" |
|---|
| 592 | hi_tax_ltp "Neisseriaceae" |
|---|
| 593 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Betaproteobacteria/Neisseriales/Neisseriaceae" |
|---|
| 594 | type_ltp "type sp." |
|---|
| 595 | rel_ltp "s95" |
|---|
| 596 | riskgroup_ltp "1" |
|---|
| 597 | url_lpsn_ltp "http://www.bacterio.net/stenoxybacter.html" |
|---|
| 598 | align_family_slv "AB201043.1:0.82 FJ425909.1:0.82 AJ011506.1:0.82 DQ413148.1:0.82 KX602193.1:0.8 AJ420330.1:0.79 JQ955625.1:0.74 GU993265.1:0.74 Y10759.1:0.74 AF208315.1:0.74 Y10756.1:0.74 X95921.1:0.74 FR749910.1:0.74 X95919.1:0.74 Y10762.1:0.74 Y10754.1:0.74 Y10755.1:0.74 FR749942.1:0.74 FR733718.1:0.74 Y10757.1:0.74 X95918.1:0.74 Y10758.1:0.74 X95920.1:0.73 Y10760.1:0.73 X95922.1:0.73 Y10766.1:0.73 Y10764.1:0.73 AE008922.4561295:0.73 Y10765.1:0.73 Y10763.1:0.72 AJ508775.1:0.72 AJ627597.1:0.71 AM182404.1:0.7 AF366377.1:0.7 AF366379.1:0.7 AF366384.1:0.7 AF366380.1:0.7 AF366381.1:0.7 AF366376.1:0.7 AF366375.1:0.7 " |
|---|
| 599 | align_filter_slv "" |
|---|
| 600 | align_log_slv "total inserted bases=2;longest insertion=1;total inserted bases before shifting=1;scoring: raw=-3746.3, weight=-4004.6, query-len=1484, aligned-bases=1484, score=0.935499; " |
|---|
| 601 | align_startpos_slv %i 1043 |
|---|
| 602 | align_stoppos_slv %i 43235 |
|---|
| 603 | nuc %i 1484 |
|---|
| 604 | turn_slv "none" |
|---|
| 605 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Betaproteobacteria/Neisseriales/Neisseriaceae" |
|---|
| 606 | %) /*species*/ |
|---|
| 607 | |
|---|
| 608 | species %% (% |
|---|
| 609 | ali_16s %% (% |
|---|
| 610 | data :7000 ".........AGUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGCAGCACGUAAGAGCUUGCUCUUAUGGUGGCGAGUGGCGGACGGGUGAGGAAUACAUCGGAAUCUACUCUUUCGUGGGGGAUAACGUAGGGAAACUUACGCUAAUACCGCAUACGACCUACGGGUGAAAGCGGAGGACCUUCGGGCUUCGCGCGAUUGAAUGAGCCGAUGUCGGAUUAGCUAGUUGGCGGGGUAAAGGCCCACCAAGGCGACGAUCCGUAGCUGGUCUGAGAGGAUGAUCARCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGGGUGAAGAAGGCCUUCGGGUUGUAAAGCCCUUUUGUUGGGAAAGAAAAGCAGUCGGUUAAUACCCGAUUGUUCUGACGGUACCCAAAGAAUAAGCACCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGUGCAAGCGUUACUCGGAAUUACUGGGCGUAAAGCGUGCGUAGGUGGUGGUUUAAGUCUGUUGUGAAAGCCCUGGGCUCAACCUGGGAAUUGCAGUGGAUACUGGRUCACUAGAGUGUGGUAGAGGGUAGYGGAAUUCCCGGUGUAGCAGUGAAAUGCGUWGAGAUCGGGAGGAACAUCCGUGGCGAAGGCGGCUACCUGGACCAACACUGACACUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCCUAAACGAUGCGAACUGGAUGUUGGGUGCAAUUUGCACGCAGUAUCGAAGCUAACGCGUUAAGUUCGCCGCCUGGGGAGUACGGUCGCAAGACUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGUAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAACUUUCCAGAGAUGGAUUGGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUCCUUAGUUGCCAGCACGUAAUGGUGGGAACUCUAAGGAGACCGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUACUACAAUGGUAGGGACAGAGGGCUGCAAACCCGCGAGGGUAAGCCAAUCCCAGAAACCCUAUCUCAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGCAGAUCAGAUUGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUUGUUGCACCAGAAGCAGGUAGCUUAACCUUCGGGAGGGCGCUUGCCACGGUGUGGCCGAUGACUGGGGUGAAGUCGUA" |
|---|
| 611 | %) /*ali_16s*/ |
|---|
| 612 | |
|---|
| 613 | name :7600 "XanCucur" |
|---|
| 614 | full_name "Xanthomonas cucurbitae" |
|---|
| 615 | acc "Y10760" |
|---|
| 616 | tax_slv "Bacteria;Proteobacteria;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Xanthomonas;" |
|---|
| 617 | start %i 1 |
|---|
| 618 | stop %i 1502 |
|---|
| 619 | version %i 1 |
|---|
| 620 | tax_embl "Bacteria;Proteobacteria;Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Xanthomonas;" |
|---|
| 621 | tax_embl_name "Xanthomonas cucurbitae" |
|---|
| 622 | tax_greengenes "k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;" |
|---|
| 623 | tax_greengenes_name "Xanthomonas cucurbitae" |
|---|
| 624 | tax_ltp "Bacteria;Proteobacteria;Gammaproteobacteria;Lysobacteriales;Lysobacteraceae;Xanthomonas" |
|---|
| 625 | tax_ltp_name "Xanthomonas cucurbitae" |
|---|
| 626 | tax_rdp "Bacteria;\"Proteobacteria\";Gammaproteobacteria;Xanthomonadales;Xanthomonadaceae;Xanthomonas;" |
|---|
| 627 | tax_rdp_name "Xanthomonas cucurbitae" |
|---|
| 628 | align_bp_score_slv %i 119 |
|---|
| 629 | align_cutoff_head_slv %i 0 |
|---|
| 630 | align_cutoff_tail_slv %i 0 |
|---|
| 631 | align_ident_slv %f 100 |
|---|
| 632 | align_quality_slv %i 99 |
|---|
| 633 | aligned_slv "2018-03-21 15:32:13" |
|---|
| 634 | ambig_slv %f 0.27 |
|---|
| 635 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 636 | author "Hauben L.; Vauterin L.; Swings J.; Moore E.R.B.; ; " |
|---|
| 637 | date "1997-04-01; 2013-04-12;" |
|---|
| 638 | description "X.cucurbitae 16S rRNA gene" |
|---|
| 639 | embl_class "Standard" |
|---|
| 640 | embl_division "Prokaryotes" |
|---|
| 641 | gene "16S rRNA" |
|---|
| 642 | homop_slv %f 0.13 |
|---|
| 643 | homop_events_slv %i 2 |
|---|
| 644 | journal "Int. J. Syst. Bacteriol. 47:328-335 (1997)" |
|---|
| 645 | nuc_gene_slv %i 1502 |
|---|
| 646 | nuc_region "1..1502" |
|---|
| 647 | nuc_rp "1-1502" |
|---|
| 648 | pintail_slv %i 100 |
|---|
| 649 | pubmed_id "9103617" |
|---|
| 650 | seq_quality_slv %i 93 |
|---|
| 651 | strain "LMG T l[T] r[T] s[T]" |
|---|
| 652 | submit_author "Moore E.R.B.; ; " |
|---|
| 653 | submit_date "24-JAN-1997 E.R.B. Moore, Gbf - Natl. Research Cntr. Biotechnology, Microbiology, Mascheroder Weg 1, Braunschweig, D-38124, FRG" |
|---|
| 654 | tax_xref_embl "56453" |
|---|
| 655 | title "Comparison of 16S ribosomal DNA sequences of all Xanthomonas species" |
|---|
| 656 | vector_slv %f 0 |
|---|
| 657 | ARB_color %i 12 |
|---|
| 658 | fullname_ltp "Xanthomonas cucurbitae" |
|---|
| 659 | hi_tax_ltp "Lysobacteraceae" |
|---|
| 660 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Lysobacteriales/Lysobacteraceae" |
|---|
| 661 | rel_ltp "s93" |
|---|
| 662 | riskgroup_ltp "1, p" |
|---|
| 663 | url_lpsn_ltp "http://www.bacterio.net/xanthomonas.html" |
|---|
| 664 | align_family_slv "AF208315.1:0.99 Y10758.1:0.99 FR733718.1:0.99 Y10755.1:0.99 FR749910.1:0.99 JQ955625.1:0.99 Y10757.1:0.99 Y10759.1:0.99 X95921.1:0.99 Y10762.1:0.99 FR749942.1:0.99 X95922.1:0.99 Y10763.1:0.98 Y10764.1:0.98 X95920.1:0.98 AE008922.4561295:0.98 Y10765.1:0.98 X95919.1:0.98 Y10766.1:0.96 GU993265.1:0.96 Y10756.1:0.96 Y10754.1:0.96 X95918.1:0.96 AF192343.1:0.92 AJ508775.1:0.79 AF366380.1:0.78 AJ627597.1:0.78 AF366378.1:0.78 AM182404.1:0.78 AF366383.1:0.78 AF366381.1:0.78 AF366375.1:0.78 AF366379.1:0.78 AF366377.1:0.78 AF366376.1:0.78 AF366384.1:0.78 FR729477.2849087:0.78 X99762.1:0.77 AF388386.1:0.77 LC004912.1:0.77 " |
|---|
| 665 | align_filter_slv "" |
|---|
| 666 | align_log_slv "scoring: raw=-4254.4, weight=-4258.19, query-len=1502, aligned-bases=1502, score=0.999108; " |
|---|
| 667 | align_startpos_slv %i 1043 |
|---|
| 668 | align_stoppos_slv %i 43260 |
|---|
| 669 | nuc %i 1502 |
|---|
| 670 | turn_slv "none" |
|---|
| 671 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Gammaproteobacteria and Betaproteobacteria/Lysobacteriales/Lysobacteraceae" |
|---|
| 672 | %) /*species*/ |
|---|
| 673 | |
|---|
| 674 | species %% (% |
|---|
| 675 | ali_16s %% (% |
|---|
| 676 | data :7000 "CUGGCUCAGAACGAACGCUGGCGGCAGGCUUAACACAUGCAAGUCGAACGCA----------UCGCAAGA---------UG-AGUGGCAGACGGGUGAGUAACGCGUGGGAACAUACCCUUUCCUGCGGAAUAGCUCCGGGAAACUGGAAUUAAUACCGCAUACGCCCUACGGGGGAAAGA--------UUUA------UCGGGGAAGGAUUGGCCCGCGUUGGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGAUCAGCCACAUUGGGACUGAGACACGGCCCAAACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGGCGCAAGCCUGAUCCAGCCAUGCCGCGUGAGUGAUGAAGGCCUUAGGGUUGUAAAGCUCUUUCACCGAUGAAGA------------UAA-------------UGACGGUAGUCGGAGAAGAAGCCCCGGCUAACUUCGUGCCAGCAGCCGCGGUAAUACGAAGGGGGCUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGAUAUUUAAGUCAGGGGUGAAAUCCCGCAGCUCAACUGCGGAACUGCCUUUGAUACUGGGUAUCUUGAGUAUGGAAGAGGUAAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUUACUGGUCCAUUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAAUGUUAGCCGUCGGGCAGUAUA-CUGUUCGGUGGCGCAGCUAACGCAUUAAACAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAGCUCUUGACAUUCGGGGUAUGGGUUGGAGACGAUGUCCUUCAGUUAGGUGGCCCCAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGCCCUUAGUUGCCAGCAU-UUA--UUGGGCACUCUAAGGGGACUGCCGGUGAUAAGCCGGAGGAAGGUGGGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGCUGGGCUACACACGUGCUACAAUGGUGGUGACAGUGGGCAGCGAGACAGCGAUGUCGAGCUAAUCUCC-AAAAGCCAUCUCAGUUCGGAUUGCACUCUGCAACUCGAGUGCAUGAAGUUGGAAUCGCUAGUAAUCGCAGAUCAG-AUGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUUGGUUUUACCCGAAGGUAGUGCGCUAACCGCAAGGAGGCAGCUAACCACGGUAGGGUCAGCGACUGGGGUGAAGUCGUA" |
|---|
| 677 | %) /*ali_16s*/ |
|---|
| 678 | |
|---|
| 679 | name :7600 "AgrSp148" |
|---|
| 680 | full_name "Agrobacterium sp. YIC 5082" |
|---|
| 681 | acc "MRDH01000011" |
|---|
| 682 | tax_slv "Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium;" |
|---|
| 683 | start %i 4946 |
|---|
| 684 | stop %i 6437 |
|---|
| 685 | version %i 1 |
|---|
| 686 | tax_embl "Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Rhizobium/Agrobacterium group;Agrobacterium;" |
|---|
| 687 | tax_embl_name "Agrobacterium sp. YIC 5082" |
|---|
| 688 | tax_greengenes "Unclassified;" |
|---|
| 689 | tax_greengenes_name "Agrobacterium sp. YIC 5082" |
|---|
| 690 | tax_ltp "Bacteria;Proteobacteria;Alphaproteobacteria;Rhizobiales;Rhizobiaceae;Agrobacterium" |
|---|
| 691 | tax_ltp_name "Agrobacterium sp. YIC 5082" |
|---|
| 692 | tax_rdp "Unclassified;" |
|---|
| 693 | tax_rdp_name "Agrobacterium sp. YIC 5082" |
|---|
| 694 | align_bp_score_slv %i 121 |
|---|
| 695 | align_cutoff_head_slv %i 1 |
|---|
| 696 | align_cutoff_tail_slv %i 1 |
|---|
| 697 | align_ident_slv %f 89.759888 |
|---|
| 698 | align_quality_slv %i 95 |
|---|
| 699 | aligned_slv "2018-03-21 15:24:17" |
|---|
| 700 | ambig_slv %f 0 |
|---|
| 701 | ann_src_slv "EMBL; RNAmmer;" |
|---|
| 702 | author "Yan J.; ; " |
|---|
| 703 | collection_date "09-Sep-2015" |
|---|
| 704 | country "China:Rudong, Jiangsu" |
|---|
| 705 | date "2017-03-16; 2017-03-16;" |
|---|
| 706 | description "Agrobacterium sp. YIC 5082 C175, whole genome shotgun sequence." |
|---|
| 707 | embl_class "Whole Genome Shotgun" |
|---|
| 708 | embl_division "Prokaryotes" |
|---|
| 709 | homop_slv %f 0.2 |
|---|
| 710 | homop_events_slv %i 3 |
|---|
| 711 | host "Sesbania cannabina" |
|---|
| 712 | insdc %i 355330 |
|---|
| 713 | journal "Unpublished" |
|---|
| 714 | nuc_gene_slv %i 1484 |
|---|
| 715 | nuc_region "4946..6437" |
|---|
| 716 | nuc_rp "1-6821" |
|---|
| 717 | seq_quality_slv %i 96 |
|---|
| 718 | strain "YIC 5082" |
|---|
| 719 | submit_author "Yan J.; ; " |
|---|
| 720 | submit_date "01-DEC-2016 Soil material cycle, Northeast institute of Geography and Agroecology, Chinese Academy of Sciences, Haping road 138#, Harbin, Heilongjiang 150081, China" |
|---|
| 721 | tax_xref_embl "1923828" |
|---|
| 722 | title "Agrobacterium salinitoleratium sp. nov., a saline-alkaline-tolerant bacterium isolated from root nodule of Sesbania Cannabina" |
|---|
| 723 | vector_slv %f 0 |
|---|
| 724 | rel_ltp "s132" |
|---|
| 725 | fullname_ltp "Agrobacterium salinitolerans" |
|---|
| 726 | ARB_color %i 12 |
|---|
| 727 | align_family_slv "X94198.1:0.87 X99469.1:0.86 X94199.1:0.85 X94201.1:0.84 AF399969.1:0.84 AF399970.1:0.83 KX870191.1:0.78 AJ877265.1:0.76 X95918.1:0.76 AF208315.1:0.75 Y10760.1:0.75 Y10755.1:0.75 GU993265.1:0.75 Y10757.1:0.75 Y10756.1:0.75 X95921.1:0.75 Y10765.1:0.75 FR749942.1:0.75 Y10766.1:0.75 Y10758.1:0.75 Y10764.1:0.75 Y10762.1:0.75 X95919.1:0.75 AF192343.1:0.75 FR733718.1:0.75 Y10754.1:0.75 X95920.1:0.75 Y10759.1:0.75 JQ955625.1:0.75 Y10763.1:0.75 AE008922.4561295:0.75 X95922.1:0.74 FR749910.1:0.74 AJ011506.1:0.74 AB201043.1:0.73 DQ413148.1:0.72 GU929924.1:0.71 AY257972.1:0.71 EF599164.1:0.71 HE978310.1:0.71 " |
|---|
| 728 | align_filter_slv "" |
|---|
| 729 | align_log_slv "shifting bases to fit in 2 bases at pos 32490 to 32490;total inserted bases=4;longest insertion=3;total inserted bases before shifting=1;scoring: raw=-3716.9, weight=-3891.59, query-len=1492, aligned-bases=1490, score=0.95511; " |
|---|
| 730 | align_startpos_slv %i 998 |
|---|
| 731 | align_stoppos_slv %i 43288 |
|---|
| 732 | nuc %i 1492 |
|---|
| 733 | turn_slv "none" |
|---|
| 734 | hi_tax_ltp "Rhizobiaceae" |
|---|
| 735 | url_lpsn_ltp "http://www.bacterio.net/agrobacterium.html" |
|---|
| 736 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Alphaproteobacteria/Rhizobiales/Rhizobiaceae and Aurantimonadaceae" |
|---|
| 737 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Alphaproteobacteria/Rhizobiales/Rhizobiaceae and Aurantimonadaceae" |
|---|
| 738 | %) /*species*/ |
|---|
| 739 | |
|---|
| 740 | species %% (% |
|---|
| 741 | ali_16s %% (% |
|---|
| 742 | data :7000 "CUGGCUCAGAACGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAGCGAA---------GCCUUCGGGC--------UU-AGCGGCGGACGGGUGAGUAACGCGUGGGAAUGUACCCUUCUCUGCGGAAUAGCCACUGGAAACGGUGAGUAAUACCGCAUACGCCCUUCGGGGGAAAGA--------UUUA------UCGGAGAAGGAUCAGCCCGCGUCUGAUUAGAUAGUUGGUGGGGUAACGGCCUACCAAGUCGACGAUCAGUAGCUGGUUUUAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUCUUAGACAAUGGGCGCAAGCCUGAUCUAGCCAUGCCGCGUGAGUGAUGAAGGCCCUAGGGUCGUAAAGCUCUUUCGCCAGGGAUGA------------UAA-------------UGACAGUACCUGGUAAAGAAACCCCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGGGUUAGCGUUGUUCGGAAUUACUGGGCGUAAAGCGCACGUAGGCGGACUAUUAAGUCAGGGGUGAAAUCCCGGGGCUCAACCCCGGAACUGCCCUUGAUACUGGUAGUCUUGAGUUCGAGAGAGGUGAGUGGAAUUCCGAGUGUAGAGGUGAAAUUCGUAGAUAUUCGGAGGAACACCAGUGGCGAAGGCGGCUCACUGGCUCGAUACUGACGCUGAGGUGCGAAAGUGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACACCGUAAACGAUGAAUGCCAGUCGUCGGGUUGCAUG-CAAUUCGGUGACACACCUAACGGAUUAAGCAUUCCGCCUGGGGAGUACGGUCGCAAGAUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGCAGAACCUUACCAACCCUUGACAUCCUGUG-CUACUGGAGAGAUCCAUGGUUCCCUUCGGGGACGCAGUGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUCGGUUAAGUCCGGCAACGAGCGCAACCCACACCCUUAGUUGCCAGCAG-UUC--CUGGGCACUCUAGGGGAACUGCCCGUGAUAAGCGGGAGGAAGGUGUGGAUGACGUCAAGUCCUCAUGGCCCUUACGGGUUGGGCUACACACGUGCUACAAUGGCAGUGACAAUGGGU----------------------AAUCCCC-AAAAACUGUCUCAGUUCGGAUUGUCGUCUGCAACUCGACGGCAUGAAGUCGGAAUCGCUAGUAAUCGCGUAACAG-AUGACGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACAUCAUGGGAGUUGGGUUUACCCGAAGACGGUGCGCCAACCUUCGGGGGGCAGCUGGCCACGGUAGGCUCAGCGACUGGGAUGAAGUCGUA" |
|---|
| 743 | %) /*ali_16s*/ |
|---|
| 744 | |
|---|
| 745 | name :7600 "PslBats2" |
|---|
| 746 | full_name "Pseudooceanicola batsensis HTCC2597" |
|---|
| 747 | acc "AAMO01000005" |
|---|
| 748 | tax_slv "Bacteria;Proteobacteria;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Pseudooceanicola;" |
|---|
| 749 | start %i 167902 |
|---|
| 750 | stop %i 169347 |
|---|
| 751 | version %i 1 |
|---|
| 752 | tax_embl "Bacteria;Proteobacteria;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Pseudooceanicola;" |
|---|
| 753 | tax_embl_name "Pseudooceanicola batsensis HTCC2597" |
|---|
| 754 | tax_greengenes "k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;" |
|---|
| 755 | tax_greengenes_name "Pseudooceanicola batsensis HTCC2597" |
|---|
| 756 | tax_ltp "Bacteria;Proteobacteria;Alphaproteobacteria;Rhodobacterales;Rhodobacteraceae;Pseudooceanicola" |
|---|
| 757 | tax_ltp_name "Pseudooceanicola batsensis" |
|---|
| 758 | tax_rdp "Unclassified;" |
|---|
| 759 | tax_rdp_name "Pseudooceanicola batsensis HTCC2597" |
|---|
| 760 | align_bp_score_slv %i 121 |
|---|
| 761 | align_cutoff_head_slv %i 0 |
|---|
| 762 | align_cutoff_tail_slv %i 0 |
|---|
| 763 | align_ident_slv %f 92.114960 |
|---|
| 764 | align_quality_slv %i 96 |
|---|
| 765 | aligned_slv "2018-03-21 15:20:12" |
|---|
| 766 | ambig_slv %f 0 |
|---|
| 767 | ann_src_slv "RNAmmer;" |
|---|
| 768 | author "Thrash J.C.; Cho J.C.; Vergin K.L.; Giovannoni S.J.; ; " |
|---|
| 769 | date "2006-01-06; 2016-04-11;" |
|---|
| 770 | description "Pseudooceanicola batsensis HTCC2597 1099451005753, whole genome shotgun sequence." |
|---|
| 771 | embl_class "Whole Genome Shotgun" |
|---|
| 772 | embl_division "Prokaryotes" |
|---|
| 773 | habitat_slv "marine habitat" |
|---|
| 774 | homop_slv %f 0.35 |
|---|
| 775 | homop_events_slv %i 5 |
|---|
| 776 | insdc %i 13449 |
|---|
| 777 | journal "J. Bacteriol. 192:3549-3550 (2010)" |
|---|
| 778 | nuc_gene_slv %i 1446 |
|---|
| 779 | nuc_region "167902..169347" |
|---|
| 780 | nuc_rp "1-353299" |
|---|
| 781 | pintail_slv %i 100 |
|---|
| 782 | publication_doi "10.1128/JB.00412-10" |
|---|
| 783 | pubmed_id "20418400" |
|---|
| 784 | seq_quality_slv %i 94 |
|---|
| 785 | strain "HTCC2597 l[T] s[T]" |
|---|
| 786 | submit_author "Giovannoni S.J.; Cho J.-C.; Ferriera S.; Johnson J.; Kravitz S.; Halpern A.; Remington K.; Beeson K.; Tran B.; Rogers Y.-H.; Friedman R.; Venter J.C.; ; " |
|---|
| 787 | submit_date "23-DEC-2005 J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA" |
|---|
| 788 | tax_xref_embl "252305" |
|---|
| 789 | title "Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta)" |
|---|
| 790 | vector_slv %f 0 |
|---|
| 791 | ARB_color %i 12 |
|---|
| 792 | fullname_ltp "Pseudooceanicola batsensis" |
|---|
| 793 | hi_tax_ltp "Rhodobacteraceae" |
|---|
| 794 | phyl_ltp "Bacteria/Alpha, Beta and Gammaproteobacteria/Alphaproteobacteria/Rhodobacterales" |
|---|
| 795 | rel_ltp "s128" |
|---|
| 796 | riskgroup_ltp "1" |
|---|
| 797 | url_lpsn_ltp "http://www.bacterio.net/pseudooceanicola.html" |
|---|
| 798 | align_family_slv "AJ877265.1:0.9 KX870191.1:0.88 X94198.1:0.78 X99469.1:0.77 X94199.1:0.77 AF399970.1:0.77 X94201.1:0.77 AF399969.1:0.76 FJ968722.1:0.73 AB013297.1:0.72 X74698.1:0.72 DQ097523.1:0.71 LN846833.1:0.71 EF599164.1:0.71 EU541605.1:0.7 EF599162.1:0.7 " |
|---|
| 799 | align_filter_slv "" |
|---|
| 800 | align_log_slv "total inserted bases=2;longest insertion=1;total inserted bases before shifting=1;scoring: raw=-3650.94, weight=-3786, query-len=1446, aligned-bases=1446, score=0.964326; " |
|---|
| 801 | align_startpos_slv %i 1006 |
|---|
| 802 | align_stoppos_slv %i 43264 |
|---|
| 803 | nuc %i 1446 |
|---|
| 804 | turn_slv "none" |
|---|
| 805 | ARB_treetax "Bacteria/Alpha, Beta and Gammaproteobacteria/Alphaproteobacteria/Rhodobacterales" |
|---|
| 806 | %) /*species*/ |
|---|
| 807 | |
|---|
| 808 | species %% (% |
|---|
| 809 | ali_16s %% (% |
|---|
| 810 | data :7000 "................GCUGGCGGCGCGUCUUAAGCAUGCAAGUCGAGCGGC-----AAGGGCAGCGAUGCCCCU----AG-AGCGGCGGACUGGUGAGUAACGCGUGGGGACCUACCCUUAGGAUGGGGAUAGCCAUUAGAAAUAGUGGGUAAUACCGAAUAUGUCGUGUGGUUGCAAAGAAAGGAGCU-AAGGCU-C-CGCCUGAGGAUGGGCCCGCGUCCCAUUAGGUAGUUGGUGCGGUAAAGGCGUACCAAGCCGGAGAUGGGUAGCCGGCCUGAGAGGGUGAACGGCCACACUGGGACUGAGAUACGGCCCAGACUCCUACGGGAGGCAGCAGCUAAGAAUAUUCCGCAAUGGGCGAAAGCCUGACGGAGCGACGCCGCGUGUACGAAGAAGGCCGAAAGGUUGUAAAGUACUUUUUUUGCGGAAGAAAAGCGGUGGGGGAAUGCC--AUCGUGAUGACGAGAAGCGAAGAAUAAGCCCCGGCUAAUUACGUGCCAGCAGCCGCGGUAACACGUAAGGGGCGAGCGUUGUUCGGAAUUAUUGGGCGUAAAGGGCGCGUAGGCGGUUAUGGAAGUCUGAUGUGAAAGGCAGGAGCUUAACUUCUGGAUUGCAUUGGAAACUGGAUGACUAGAGUCAUGGAGGGGGAGUUGGAAUUCCUAGUGUAGGGGUGAAAU-UGUAGAUAUUAGGAAGAACACCGGUGGCGAAGGCGAACUUCUAG-CCAAUACUGACGCUGAGGCGCGAAAGUGCGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCGCACUAUAAACGAUGUGCACUAGGUGUUGGGCCGA--G-CGGUUCAGUGCCGGAGCGAACGUGAUAAGUGCACCGCCUGGGGAGUAUGCCCGCAAGGGUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGAUACGCGAGGAACCUUACCUGGGUUUGACAUGGAGGGAAGGGUGCAGAGAUGUACCCGCCUGGCAACAGGCGCUUUCACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUACUGCCAGUUGCUAACAGGUAAAGCUGAGGACUCUGGCGGAACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUAUGUCCAGGGCUACACACGUGCUACAAUGGUUGGUACAACGUGACGCGAAACCGCGAGGUAAAGCGAAGCACG-AAAAGCCAGCCUAGUUCGGAUUGAAGUCUGAAACCCGACUUCAUGAAGUUGGAAUCGCUAGUAAUCGCACAUCAG-AUGGUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUCCGAGUUGGAGGUACCCGAAGCCGGUAGUCUAACCGCAAGG-GGACGCUGUCGAAGGUACGUUUAGUGAGGAGGGUGAAGUCGUA" |
|---|
| 811 | %) /*ali_16s*/ |
|---|
| 812 | |
|---|
| 813 | name :7600 "TreIsopt" |
|---|
| 814 | full_name "Treponema isoptericolens" |
|---|
| 815 | acc "AM182455" |
|---|
| 816 | tax_slv "Bacteria;Spirochaetes;Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;" |
|---|
| 817 | start %i 1 |
|---|
| 818 | stop %i 1464 |
|---|
| 819 | version %i 1 |
|---|
| 820 | tax_embl "Bacteria;Spirochaetes;Spirochaetales;Spirochaetaceae;Treponema;" |
|---|
| 821 | tax_embl_name "Treponema isoptericolens" |
|---|
| 822 | tax_greengenes "k__Bacteria;p__Spirochaetes;c__Spirochaetes;o__Spirochaetales;f__Spirochaetaceae;g__Treponema;" |
|---|
| 823 | tax_greengenes_name "Treponema isoptericolens" |
|---|
| 824 | tax_ltp "Bacteria;Spirochaetes;Spirochaetes;Spirochaetales;Spirochaetaceae;Treponema" |
|---|
| 825 | tax_ltp_name "Treponema isoptericolens" |
|---|
| 826 | tax_rdp "Bacteria;\"Spirochaetes\";Spirochaetia;Spirochaetales;Spirochaetaceae;Treponema;" |
|---|
| 827 | tax_rdp_name "Treponema isoptericolens" |
|---|
| 828 | align_bp_score_slv %i 113 |
|---|
| 829 | align_cutoff_head_slv %i 0 |
|---|
| 830 | align_cutoff_tail_slv %i 0 |
|---|
| 831 | align_ident_slv %f 74.731186 |
|---|
| 832 | align_quality_slv %i 72 |
|---|
| 833 | aligned_slv "2018-03-21 15:12:03" |
|---|
| 834 | ambig_slv %f 0 |
|---|
| 835 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 836 | author "Droge S.; Rachel R.; Radek R.; Konig H.; ; " |
|---|
| 837 | country "Germany" |
|---|
| 838 | date "2006-01-19; 2012-09-05;" |
|---|
| 839 | description "Treponema isoptericolens partial 16S rRNA gene, type strain SPIT5T" |
|---|
| 840 | embl_class "Standard" |
|---|
| 841 | embl_division "Prokaryotes" |
|---|
| 842 | gene "16S rRNA" |
|---|
| 843 | habitat_slv "hindgut of host" |
|---|
| 844 | homop_slv %f 0.41 |
|---|
| 845 | homop_events_slv %i 4 |
|---|
| 846 | host "Termite" |
|---|
| 847 | isolation_source "Incisitermes tabogae" |
|---|
| 848 | journal "Int. J. Syst. Evol. Microbiol. 58:1079-1083 (2008)" |
|---|
| 849 | nuc_gene_slv %i 1464 |
|---|
| 850 | nuc_region "1..1464" |
|---|
| 851 | nuc_rp "1-1464" |
|---|
| 852 | pintail_slv %i 100 |
|---|
| 853 | publication_doi "10.1099/ijs.0.64699-0" |
|---|
| 854 | pubmed_id "18450692" |
|---|
| 855 | seq_quality_slv %i 93 |
|---|
| 856 | strain "type strain: SPIT5 l[T] r[T] s[T]" |
|---|
| 857 | submit_author "Droege S.; ; " |
|---|
| 858 | submit_date "18-JAN-2006 Droege S., Institute of Microbiology and Wine Res., University Mainz, Becherweg 15,, 55128 Mainz, GERMANY." |
|---|
| 859 | tax_xref_embl "367456" |
|---|
| 860 | title "Treponema isoptericolens sp. nov., a novel spirochaete from the hindgut of the termite Incisitermes tabogae" |
|---|
| 861 | vector_slv %f 0 |
|---|
| 862 | ARB_color %i 12 |
|---|
| 863 | fullname_ltp "Treponema isoptericolens" |
|---|
| 864 | hi_tax_ltp "Spirochaetaceae" |
|---|
| 865 | phyl_ltp "Bacteria/Spirochaetes/Spirochaetaceae" |
|---|
| 866 | rel_ltp "s95" |
|---|
| 867 | riskgroup_ltp "1" |
|---|
| 868 | url_lpsn_ltp "http://www.bacterio.net/treponema.html" |
|---|
| 869 | align_family_slv "AF399969.1:0.68 X99469.1:0.68 X94201.1:0.68 X94199.1:0.68 X94198.1:0.68 Y10755.1:0.68 GU993265.1:0.68 X95918.1:0.68 Y10757.1:0.68 Y10756.1:0.68 Y10754.1:0.68 Y10762.1:0.68 Y10759.1:0.68 X95920.1:0.68 FR733718.1:0.68 AF208315.1:0.68 " |
|---|
| 870 | align_filter_slv "" |
|---|
| 871 | align_log_slv "shifting bases to fit in 3 bases at pos 3655 to 3656;shifting bases to fit in 4 bases at pos 3657 to 3659;shifting bases to fit in 1 bases at pos 40928 to 40928;total inserted bases=19;longest insertion=5;total inserted bases before shifting=1;scoring: raw=-2944.56, weight=-4043.12, query-len=1464, aligned-bases=1464, score=0.728289; " |
|---|
| 872 | align_startpos_slv %i 1059 |
|---|
| 873 | align_stoppos_slv %i 43219 |
|---|
| 874 | nuc %i 1464 |
|---|
| 875 | turn_slv "none" |
|---|
| 876 | ARB_treetax "Bacteria/Spirochaetes/Spirochaetaceae" |
|---|
| 877 | %) /*species*/ |
|---|
| 878 | |
|---|
| 879 | species %% (% |
|---|
| 880 | ali_16s %% (% |
|---|
| 881 | data :7000 "CUGGCUCAGGAUGAACGCUGACAGAAUGCUUAACACAUGCAAGUCGACUGGA--AUU---CACCUUCGGGUG---AUAGUACGGUGGCGGACGGGUGAGUAACGCGUAAAGACUUGCCCUCUAGACUGGGACAACUGUUGGAAACGACAGCUAAUACCGGAUA--GCGGCAUCGCGAAAGC--------UAUA------UCGCUAGAGGAGAGCUUUGCGUCCCAUUAGUUAGUUGGUAGGGUAAUGGCCUACCAAGACGAUGAUGGGUAGCCGGCCUGAGAGGGUGAUCGGCCACAAGGGGACUGAGACACGGCCCUUACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGGACAAUGGACUAAAGUCUGAUCCAGCAAUUCUGUGUGCACGAUGAAGGUCUUCGGAUCGUAAAGUGCUUUCAGGUGGGAAGAA-----------GAAA---------G--UGACGGUACCACCAGAAGAAGCGACGGCUAAAUACGUGCCAGCAGCCGCGGUAAUACGUAUGUCGCAAGCGUUAUCCGGAAUUAUUGGGCGUAAAGCGCGUCUAGGCGGCCUUUUAAGUCUGAUGUGAAAAUGCGGGGCUCAACUCC-GUAUUGCGUUGGAAACUGGAAGGCUAGAGUAUCAGAGAGGUGGGCGGAACUACAAGUGUAGAGGUGAAAUUCGUAGAUAUUUGUAGGAAUGCCGAUGGGGAAGCCAGCUCACUGGAUGAAUACUGACGCUAAAGCGCGAAAGCGUGGGGAGCAAACGGGAUUAGAUACCCCGGUAGUCCACGCCGUAAACGAUGAUCACUAAGUGUGGGGGGUCGAA-CC--UCCGUGCUCAAGCUAACGCGAUAAGUGAUCCGCCUGGGGAGUACGUACGCAAGUAUGAAACUCAAAGGAAUUGACGGGGACCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGAGGAACCUUACCAGCCCUUGACAUCCCAAGAACUAGGCAGAGAUGCUUAGGUGCUUUCGGGAACUUGGUGACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUAUCGUAUGUUACCAUCAU-UAA--UUGGGGACUCAUGCGAGACUGCCUGCGACGAGCAGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGGGCUGGGCUACACACGUGCUACAAUGGACAAUACAGAGGGUAGCGAUCCCGCGAGGGGGAGCCAAUCUCAGAAAGUUGUUCUUAGUUCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGUUGGAAUCGCUAGUAAUCGCGAAUCAGAAUGUCGCGGUGAAUACGUUCUCGGGUCUUGUACACACCGCCCGUCACACCACGAGAGUUGGUUGCACCUGAAGUAGCAGGCCUAACCUUUAGGAGGGAUGUUCCUAAGGUGUGAUUAGCGAUUGGGGUGAAGUCGUA" |
|---|
| 882 | %) /*ali_16s*/ |
|---|
| 883 | |
|---|
| 884 | name :7600 "IlyPoly2" |
|---|
| 885 | full_name "Ilyobacter polytropus DSM 2926" |
|---|
| 886 | acc "CP002281" |
|---|
| 887 | tax_slv "Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Ilyobacter;" |
|---|
| 888 | start %i 190221 |
|---|
| 889 | stop %i 191730 |
|---|
| 890 | version %i 1 |
|---|
| 891 | tax_embl "Bacteria;Fusobacteria;Fusobacteriales;Fusobacteriaceae;Ilyobacter;" |
|---|
| 892 | tax_embl_name "Ilyobacter polytropus DSM 2926" |
|---|
| 893 | tax_greengenes "k__Bacteria;p__Fusobacteria;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Propionigenium;" |
|---|
| 894 | tax_greengenes_name "Ilyobacter polytropus DSM 2926" |
|---|
| 895 | tax_ltp "Bacteria;Fusobacteria;Fusobacteriia;Fusobacteriales;Fusobacteriaceae;Ilyobacter" |
|---|
| 896 | tax_ltp_name "Ilyobacter polytropus" |
|---|
| 897 | tax_rdp "Bacteria;\"Fusobacteria\";Fusobacteriia;\"Fusobacteriales\";\"Fusobacteriaceae\";Ilyobacter;" |
|---|
| 898 | tax_rdp_name "Ilyobacter polytropus" |
|---|
| 899 | align_bp_score_slv %i 117 |
|---|
| 900 | align_cutoff_head_slv %i 0 |
|---|
| 901 | align_cutoff_tail_slv %i 0 |
|---|
| 902 | align_ident_slv %f 76.5748 |
|---|
| 903 | align_quality_slv %i 87 |
|---|
| 904 | aligned_slv "2018-03-21 15:11:05" |
|---|
| 905 | ambig_slv %f 0 |
|---|
| 906 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 907 | author "Sikorski J.; Chertkov O.; Lapidus A.; Nolan M.; Lucas S.; Del Rio T.G.; Tice H.; Cheng J.F.; Tapia R.; Han C.; Goodwin L.; Pitluck S.; Liolios K.; Ivanova N.; Mavromatis K.; Mikhailova N.; Pati A.; Chen A.; Palaniappan K.; Land M.; Hauser L.; Chang Y.J.; Jeffries C.D.; Brambilla E.; Yasawong M.; Rohde M.; Pukall R.; Spring S.; Goker M.; Woyke T.; Bristow J.; Eisen J.A.; Markowitz V.; Hugenholtz P.; Kyrpides N.C.; Klenk H.P.; ; " |
|---|
| 908 | country "Germany" |
|---|
| 909 | date "2010-10-28; 2015-06-09;" |
|---|
| 910 | description "Ilyobacter polytropus DSM 2926, complete genome." |
|---|
| 911 | embl_class "Standard" |
|---|
| 912 | embl_division "Prokaryotes" |
|---|
| 913 | habitat_slv "sediment" |
|---|
| 914 | homop_slv %f 0.2 |
|---|
| 915 | homop_events_slv %i 2 |
|---|
| 916 | insdc %i 32577 |
|---|
| 917 | isolation_source "marine mud" |
|---|
| 918 | journal "Stand Genomic Sci 3:304-314 (2010)" |
|---|
| 919 | nuc_gene_slv %i 1510 |
|---|
| 920 | nuc_region "190221..191730" |
|---|
| 921 | nuc_rp "1-2046464" |
|---|
| 922 | pintail_slv %i 100 |
|---|
| 923 | pubmed_id "21304735" |
|---|
| 924 | seq_quality_slv %i 96 |
|---|
| 925 | strain "DSM 2926 e[G] l[T] r[T] s[T]" |
|---|
| 926 | submit_author "Lucas S.; Copeland A.; Lapidus A.; Glavina del Rio T.; Dalin E.; Tice H.; Bruce D.; Goodwin L.; Pitluck S.; Kyrpides N.; Mavromatis K.; Ivanova N.; Ovchinnikova G.; Chertkov O.; Detter J.C.; Han C.; Tapia R.; Land M.; Hauser L.; Markowitz V.; Cheng J.-F.; Hugenholtz P.; Woyke T.; Wu D.; Spring S.; Pukall R.; Steenblock K.; Brambilla E.; Klenk H.-P.; Eisen J.A.; ; " |
|---|
| 927 | submit_date "18-OCT-2010 US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA" |
|---|
| 928 | tax_xref_embl "572544" |
|---|
| 929 | title "Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1)" |
|---|
| 930 | vector_slv %f 0 |
|---|
| 931 | ARB_color %i 10 |
|---|
| 932 | fullname_ltp "Ilyobacter polytropus" |
|---|
| 933 | hi_tax_ltp "Fusobacteriaceae" |
|---|
| 934 | phyl_ltp "Bacteria/Fusobacteria/Fusobacteriaceae" |
|---|
| 935 | type_ltp "type sp." |
|---|
| 936 | rel_ltp "s111" |
|---|
| 937 | riskgroup_ltp "1" |
|---|
| 938 | url_lpsn_ltp "http://www.bacterio.net/ilyobacter.html" |
|---|
| 939 | align_family_slv "AF399969.1:0.65 X94201.1:0.65 X94199.1:0.65 X99469.1:0.65 X94198.1:0.65 AF399970.1:0.64 KX602193.1:0.64 FJ425909.1:0.63 AJ420330.1:0.63 DQ413148.1:0.62 AJ011506.1:0.62 AB201043.1:0.62 KU719509.1:0.62 KT633950.1:0.61 AF208315.1:0.59 JQ955625.1:0.59 " |
|---|
| 940 | align_filter_slv "" |
|---|
| 941 | align_log_slv "total inserted bases=5;longest insertion=1;total inserted bases before shifting=1;scoring: raw=-3363.38, weight=-3833.62, query-len=1510, aligned-bases=1510, score=0.877335; " |
|---|
| 942 | align_startpos_slv %i 1006 |
|---|
| 943 | align_stoppos_slv %i 43277 |
|---|
| 944 | nuc %i 1510 |
|---|
| 945 | turn_slv "none" |
|---|
| 946 | ARB_treetax "Bacteria/Fusobacteria/Fusobacteriaceae" |
|---|
| 947 | %) /*species*/ |
|---|
| 948 | |
|---|
| 949 | species %% (% |
|---|
| 950 | ali_16s %% (% |
|---|
| 951 | data :7000 ".............................................................................GGCG-ACCGGCGCACGGGUGCGUAACACGUAUGCACCUACCUUAAACUGGGAGAUAGCCCGGGGAAACUCGGAUUAAUACCCCAUAACACAUCAUGACUAAAGA--------UUUA------UCGGUUUAAGAUGGGCAUGCGUUCGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCUACGAUCGAUAGGGGGUCUGAGAGGAUGAUCCCCCACACUGGUACUGAGAUACGGACCAGACUCCUACGGGAGGCAGCAGUAGGGAAUAUUGGUCAAUGGAGGCAACUCUGAACCAGCCAUGCCGCGUGUAGGAAGAAGGCGUCUGCGUUGUAAACUACUUUUGAUUGGGAACAAAUGACUCU---UGCG----AGAGUAGCUGAGUGUACCAAUAGAAUAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUGUCCGGAUUUAUUGGGUUUAAAGGGUGCGUAGGCGGCUUAAUAAGUCAGUGGUGAAAGCCGAUCGCUUAACGAUCGAACUGCCAUUGAUACUGCUAGGCUUGAGUAUAGAUGAGGUAGGCGGAAUUGCAG-UGUAGCGGUGAAAUGCAUAGAUAUUGUCAAGAACACCAAUUGCGAAGGCAGCUUACUAAGUUAUAACUGACGCUGAGGCACGAAAGUGCGGGGAUCAAACAGGAUUAGAUACCCUGGUAGUCCGCACCGUAAACGAUGAUCACUCGCUGUGUGCG--AUAAA--AGUACGCGGCCAAGCGAAAGCGAUAAGUGAUCCACCUGGGGAGUACGCCCGCAAGGGUGAAACUCAAAGGAAUUGACGGGGGUCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGAUACGCGAGGAACCUUACCUAGGCUAGAAUGUGAAGGAAUGUAUCAGAAAUGGUGCAG--UCAGCAAGACCUGAAA-CAAGGUGCUGCAUGGCUGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUAUCUUUAGUUGCCAGCGAGUUAUGUCGGGGACUCUAGAGAGACUGCCUGUG-UAAACAGGAGGAAGGAGGGGACGACGUCAAGUCAUCAUGGCCCUUACGCCUAGGGCUACACACGUGCUACAAUGGCGCAUACAGAGUGUUGCAAGCUAGUGAUAGCAAGCCAAUCACAAAAAGUGCGUCUCAGUUCGGAUUGAAGUCUGCAACUCGACUUCAUGAAGCUGGAAUCGCUAGUAAUCGCGUAUCAGAAUGACGCGGUGAAUACGUUCCCGGACCUUGUACACACCGCCCGUCAAGCCAUGAAAGUCUGGUGGACCUGAAGGCCGUAACC-----GCAA----GGAGCGGCUCAGGGUAAAACAGGUAAUUAGGGCUAA......" |
|---|
| 952 | %) /*ali_16s*/ |
|---|
| 953 | |
|---|
| 954 | name :7600 "CytHutc2" |
|---|
| 955 | full_name "Cytophaga hutchinsonii ATCC 33406" |
|---|
| 956 | acc "CP000383" |
|---|
| 957 | tax_slv "Bacteria;Bacteroidetes;Bacteroidia;Cytophagales;Cytophagaceae;Cytophaga;" |
|---|
| 958 | start %i 1997115 |
|---|
| 959 | stop %i 1998496 |
|---|
| 960 | version %i 1 |
|---|
| 961 | tax_embl "Bacteria;Bacteroidetes;Cytophagia;Cytophagales;Cytophagaceae;Cytophaga;" |
|---|
| 962 | tax_embl_name "Cytophaga hutchinsonii ATCC 33406" |
|---|
| 963 | tax_greengenes "k__Bacteria;p__Bacteroidetes;c__Cytophagia;o__Cytophagales;f__Cytophagaceae;g__Cytophaga;" |
|---|
| 964 | tax_greengenes_name "Cytophaga hutchinsonii ATCC 33406" |
|---|
| 965 | tax_ltp "Bacteria;Bacteroidetes;Cytophagia;Cytophagales;Cytophagaceae;Cytophaga" |
|---|
| 966 | tax_ltp_name "Cytophaga hutchinsonii" |
|---|
| 967 | tax_rdp "Bacteria;\"Bacteroidetes\";Cytophagia;Cytophagales;Cytophagaceae;Cytophaga;" |
|---|
| 968 | tax_rdp_name "Cytophaga hutchinsonii" |
|---|
| 969 | align_bp_score_slv %i 101 |
|---|
| 970 | align_cutoff_head_slv %i 0 |
|---|
| 971 | align_cutoff_tail_slv %i 0 |
|---|
| 972 | align_ident_slv %f 82.919708 |
|---|
| 973 | align_quality_slv %i 88 |
|---|
| 974 | aligned_slv "2018-03-21 14:55:41" |
|---|
| 975 | ambig_slv %f 0 |
|---|
| 976 | ann_src_slv "EMBL; RNAmmer;" |
|---|
| 977 | author "Xie G.; Bruce D.C.; Challacombe J.F.; Chertkov O.; Detter J.C.; Gilna P.; Han C.S.; Lucas S.; Misra M.; Myers G.L.; Richardson P.; Tapia R.; Thayer N.; Thompson L.S.; Brettin T.S.; Henrissat B.; Wilson D.B.; McBride M.J.; ; " |
|---|
| 978 | culture_collection "ATCC:33406" |
|---|
| 979 | date "2006-07-12; 2014-05-15;" |
|---|
| 980 | description "Cytophaga hutchinsonii ATCC 33406, complete genome." |
|---|
| 981 | embl_class "Standard" |
|---|
| 982 | embl_division "Prokaryotes" |
|---|
| 983 | habitat_slv "soil" |
|---|
| 984 | homop_slv %f 0.29 |
|---|
| 985 | homop_events_slv %i 4 |
|---|
| 986 | insdc %i 54 |
|---|
| 987 | journal "Appl. Environ. Microbiol. 73:3536-3546 (2007)" |
|---|
| 988 | nuc_gene_slv %i 1382 |
|---|
| 989 | nuc_region "1997115..1998496" |
|---|
| 990 | nuc_rp "1-4433218" |
|---|
| 991 | pintail_slv %i 100 |
|---|
| 992 | publication_doi "10.1128/AEM.00225-07" |
|---|
| 993 | pubmed_id "17400776" |
|---|
| 994 | seq_quality_slv %i 95 |
|---|
| 995 | strain "ATCC 33406 e[G] l[T] r[T] s[T]" |
|---|
| 996 | submit_author "Copeland A.; Lucas S.; Lapidus A.; Barry K.; Detter J.C.; Glavina del Rio T.; Hammon N.; Israni S.; Dalin E.; Tice H.; Pitluck S.; Brettin T.; Bruce D.; Challacombe J.F.; Chertkov O.; Han S.; Tapia R.; McBride M.J.; Misra M.; Myers G.L.; Thayer N.N.; Thompson L.S.; Xie G.; Gilna P.; Schmutz J.; Larimer F.; Land M.; Hauser L.; Kyrpides N.; Lykidis A.; Ivanova N.; Mavrommatis K.; Rubin E.; Richardson P.; ; " |
|---|
| 997 | submit_date "02-JUN-2006 US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA" |
|---|
| 998 | tax_xref_embl "269798" |
|---|
| 999 | title "Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii" |
|---|
| 1000 | vector_slv %f 0 |
|---|
| 1001 | ARB_color %i 10 |
|---|
| 1002 | fullname_ltp "Cytophaga hutchinsonii" |
|---|
| 1003 | hi_tax_ltp "Cytophagaceae" |
|---|
| 1004 | phyl_ltp "Bacteria/Bacteroidetes/Cytophagales/Cytophagaceae" |
|---|
| 1005 | type_ltp "type sp." |
|---|
| 1006 | rel_ltp "s93" |
|---|
| 1007 | riskgroup_ltp "1" |
|---|
| 1008 | url_lpsn_ltp "http://www.bacterio.net/cytophaga.html" |
|---|
| 1009 | align_family_slv "KP261822.1:0.77 GU929924.1:0.65 AM162656.1:0.65 KM099166.1:0.64 DQ922920.1:0.64 AY426979.1:0.64 AJ316171.1:0.64 GU078672.1:0.64 GU929925.1:0.64 KC751062.1:0.64 DQ097523.1:0.64 AM162657.1:0.64 AY682382.1:0.64 Y13830.1:0.64 AY155585.1:0.64 Y08430.1:0.64 " |
|---|
| 1010 | align_filter_slv "" |
|---|
| 1011 | align_log_slv "total inserted bases=1;longest insertion=1;total inserted bases before shifting=1;scoring: raw=-3112.31, weight=-3531.75, query-len=1382, aligned-bases=1382, score=0.881238; " |
|---|
| 1012 | align_startpos_slv %i 1768 |
|---|
| 1013 | align_stoppos_slv %i 43160 |
|---|
| 1014 | nuc %i 1382 |
|---|
| 1015 | turn_slv "none" |
|---|
| 1016 | ARB_treetax "Bacteria/Bacteroidetes/Cytophagales/Cytophagaceae" |
|---|
| 1017 | %) /*species*/ |
|---|
| 1018 | |
|---|
| 1019 | species %% (% |
|---|
| 1020 | ali_16s %% (% |
|---|
| 1021 | data :7000 "CUGGCUCAGGACGAACGCUGGCGGCGUGCUUAACACAUGCAAGUCGAACGUG--AUG-UCAGAGCUUGCUCUGG--CGGAUCAGUGGCGAACGGGUGAGUAACACGUGAGUACCUGCCCCCGACUCUGGGAUAACUGCUAGAAAUGGUAGCUAAUACCGGAUA--GCCGCAUGGUGAAAGA--------AUU-------UCGGUUGGGGAUGGACUCGCGGCCUAUCAGGUUGUUGGUGAGGUAAUGGCUCACCAAGCCUACGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGAAAGCCUGAUGCAGCAACGCCGCGUGAGGGAUGACGGCCUUCGGGUUGUAAACCUCUUUUAGUAGGGAAGAAG-C--------GAAA---------G--UGACGGUACCUGCAGAAAAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGAGCUCGUAGGCGGUUUGUCGCGUCUGCUGUGAAAUCCCGAGGCUCAACCUCGGGUCUGCAGUGGGUACGGGCAGACUAGAGUGCGGUAGGGGAGAUUGGAAUUCCUGGUGUAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCGAUGGCGAAGGCAGAUCUCUGGGCCGUAACUGACGCUGAGGAGCGAAAGCAUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCAUGCCGUAAACGUUGGGAACUAGAUGUGGGGACCUUCCAGGUCUCCGUGUCGCAGCUAACGCAUUAAGUUCCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGCGGAUUAAUUCGAUGCAACGCGAAGAACCUUACCAAGGCUUGACAUAACCGGAAACGUGCAGAGAUGUGCGCC--CCGCAAGG--UCGGUAUACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUUCUAUGUUGCCAGCACGUAAUGGUGGGAACUCAUAGGAGACUGCCGGGGCCAACCCGGAGGAAGGUGGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGUCUUGGGCUUCACGCAUGCUACAAUGGCCGGUACAAAGGGCUGCGAUACCGUAAGGUGGAGCGAAUCCCAAAAAGCCGGUCUCAGUUCGGAUUGAGGUCUGCAACUCGACCUCAUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGAACGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCAAGUCAUGAAAGUCGGUAACACCCGAAGCCAGUGGCCUAACCGCAAGGGAGGAGCUGUCGAAGGUGGGAUCGGUGAUUAGGACUAAGUCGUA" |
|---|
| 1022 | %) /*ali_16s*/ |
|---|
| 1023 | |
|---|
| 1024 | name :7600 "ClaMich8" |
|---|
| 1025 | full_name "Clavibacter michiganensis subsp. sepedonicus" |
|---|
| 1026 | acc "AM849034" |
|---|
| 1027 | tax_slv "Bacteria;Actinobacteria;Actinobacteria;Micrococcales;Microbacteriaceae;Clavibacter;" |
|---|
| 1028 | start %i 1297189 |
|---|
| 1029 | stop %i 1298706 |
|---|
| 1030 | version %i 1 |
|---|
| 1031 | tax_embl "Bacteria;Actinobacteria;Micrococcales;Microbacteriaceae;Clavibacter;" |
|---|
| 1032 | tax_embl_name "Clavibacter michiganensis subsp. sepedonicus" |
|---|
| 1033 | tax_greengenes "k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter;s__michiganensis;" |
|---|
| 1034 | tax_greengenes_name "Clavibacter michiganensis subsp. sepedonicus" |
|---|
| 1035 | tax_ltp "Bacteria;Actinobacteria;Actinobacteria;Micrococcales;Microbacteriaceae;Clavibacter" |
|---|
| 1036 | tax_ltp_name "Clavibacter michiganensis subsp. sepedonicus" |
|---|
| 1037 | tax_rdp "Bacteria;\"Actinobacteria\";Actinobacteria;Actinobacteridae;Actinomycetales;Micrococcineae;Microbacteriaceae;Clavibacter;" |
|---|
| 1038 | tax_rdp_name "Clavibacter michiganensis subsp. michiganensis" |
|---|
| 1039 | align_bp_score_slv %i 122 |
|---|
| 1040 | align_cutoff_head_slv %i 1 |
|---|
| 1041 | align_cutoff_tail_slv %i 0 |
|---|
| 1042 | align_ident_slv %f 95.121948 |
|---|
| 1043 | align_quality_slv %i 99 |
|---|
| 1044 | aligned_slv "2018-03-21 14:45:14" |
|---|
| 1045 | ambig_slv %f 0 |
|---|
| 1046 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 1047 | author "Bentley S.D.; Corton C.; Barron A.; Clark L.; Doggett J.; Harris B.; Ormond D.; Quail M.A.; Brown S.E.; Knudson D.; Francis D.; Parkhill P.; Ishimaru C.; ; " |
|---|
| 1048 | date "2008-02-12; 2015-02-06;" |
|---|
| 1049 | description "Clavibacter michiganensis subsp. sepedonicus complete genome" |
|---|
| 1050 | embl_class "Standard" |
|---|
| 1051 | embl_division "Prokaryotes" |
|---|
| 1052 | habitat_slv "plant-associated habitat" |
|---|
| 1053 | homop_slv %f 0.27 |
|---|
| 1054 | homop_events_slv %i 4 |
|---|
| 1055 | insdc %i 184 |
|---|
| 1056 | journal "J. Bacteriol. 190:2150-2160 (2008)" |
|---|
| 1057 | nuc_gene_slv %i 1515 |
|---|
| 1058 | nuc_region "1297189..1298706" |
|---|
| 1059 | nuc_rp "1-3258645" |
|---|
| 1060 | pintail_slv %i 100 |
|---|
| 1061 | publication_doi "10.1128/JB.01598-07" |
|---|
| 1062 | pubmed_id "18192393" |
|---|
| 1063 | seq_quality_slv %i 95 |
|---|
| 1064 | strain "ATCC33113 e[G] l[T] r[T] s[T]" |
|---|
| 1065 | sub_species "sepedonicus" |
|---|
| 1066 | submit_author "Bentley S.D.; ; " |
|---|
| 1067 | submit_date "09-JAN-2008 Bentley S.D., Pathogen Sequencing, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UNITED KINGDOM." |
|---|
| 1068 | tax_xref_embl "31964" |
|---|
| 1069 | title "Genome of the actinomycete plant pathogen Clavibacter michiganensis subsp. sepedonicus suggests recent niche adaptation" |
|---|
| 1070 | vector_slv %f 0 |
|---|
| 1071 | ARB_color %i 12 |
|---|
| 1072 | fullname_ltp "Clavibacter michiganensis subsp. sepedonicus" |
|---|
| 1073 | hi_tax_ltp "Microbacteriaceae" |
|---|
| 1074 | phyl_ltp "Bacteria/Actinobacteria/Actinobacteria/Microccocales and Actinomycetaceae/Microbacteriaceae" |
|---|
| 1075 | rel_ltp "s100" |
|---|
| 1076 | riskgroup_ltp "1, p2" |
|---|
| 1077 | url_lpsn_ltp "http://www.bacterio.net/clavibacter.html" |
|---|
| 1078 | align_family_slv "DQ256087.1:0.91 DQ372937.1:0.89 AB778260.1:0.89 GQ379228.1:0.88 AY273185.1:0.88 FJ425902.1:0.88 AF105422.1:0.88 FJ528304.1:0.86 AY684123.1:0.85 FJ527420.1:0.84 AY228479.1:0.84 KU719509.1:0.76 L09178.1:0.7 DQ413148.1:0.69 FJ425909.1:0.69 AJ420330.1:0.68 " |
|---|
| 1079 | align_filter_slv "" |
|---|
| 1080 | align_log_slv "scoring: raw=-4018, weight=-4058, query-len=1518, aligned-bases=1517, score=0.990143; " |
|---|
| 1081 | align_startpos_slv %i 1004 |
|---|
| 1082 | align_stoppos_slv %i 43284 |
|---|
| 1083 | nuc %i 1518 |
|---|
| 1084 | turn_slv "none" |
|---|
| 1085 | ARB_treetax "Bacteria/Actinobacteria/Actinobacteria/Microccocales and Actinomycetaceae/Microbacteriaceae" |
|---|
| 1086 | %) /*species*/ |
|---|
| 1087 | |
|---|
| 1088 | species %% (% |
|---|
| 1089 | ali_16s %% (% |
|---|
| 1090 | data :7000 "CUGGCUCAGGACGAACGCUGGCGGCGUGCUUAACACAUGCAAGUCGAGCGGAA-AGG----CCCUUCGGGG-----UACUCGAGCGGCGAACGGGUGAGUAACACGUGGGCACCUACCCCCAGCACCGGGAUAACCCCGGGAAACCGGGGCUAAUACCGGAUA--GUGGCAUCACGAAAGC--------UUUU------GCGGCUGGGGAUGGGCCCGCGGCCUAUCAGCUUGUUGGUGGGGUAACGGCCUACCAAGGCGACGACGGGUAGCCGGCCUGAGAGGGCGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCGCAAUGGGCGAAAGCCUGACGCAGCGACGCCGCGUGGGGGAAGAAGGCCUUCGGGUUGUAAACCCCUUUCAGCAGGAACGAAG-C--------GAAA---------G--UGACGGUACCUGCAGAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGUGCAAGCGUUGUCCGGAUUUACUGGGCGUAAAGAGCUCGUAGGCGGUCUGUCGCGUCGGAUGUGAAAACCCAGGGCUCAACCCUGGGCCUGCAUUCGAUACGGGCAGACUAGAGUGCGGCAGGGGAGACUGGAAUUCCUGGUGUAGCGGUGAAAUGCGCAGAUAUCAGGAGGAACACCGGUGGCGAAGGCGGGUCUCUGGGCCGCAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGUUGGGCGCUAGGUGUGGGGGACUUCCAGUCCUCCGUGCCGCAGCUAACGCAUUAAGCGCCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGCGGAGCAUGUGGCUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGGCUUGACAUGAGGGAAAUCCGGCAGAGAUGCCGGGU--CCGCAAGG-GCC-CUGCACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUCCCAUGUUGCCAGCGGGUAAUGCCGGGGACUCAUGGGAGACUGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUACGUCCAGGGCUGCACACAUGCUACAAUGGCCGGUACAAAGGGCUGCGAAACCGUGAGGUGGAGCGAAUCCCAAAAAGCCGGUCUCAGUUCGGAUCGGGGUCUGCAACUCGACCCCGUGAAGUCGGAGUCGCUAGUAAUCGCGGAUCAGAAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGUCACGAAAGUCGGUAACACCCGAAGCCGGUGGCCCAACCGCAAGGAGGGAGCCGUCGAAGGUGGGACCGGCGAUUGGGACGAAGUCGUA" |
|---|
| 1091 | %) /*ali_16s*/ |
|---|
| 1092 | |
|---|
| 1093 | name :7600 "AcsCell2" |
|---|
| 1094 | full_name "Acidothermus cellulolyticus 11B" |
|---|
| 1095 | acc "CP000481" |
|---|
| 1096 | tax_slv "Bacteria;Actinobacteria;Actinobacteria;Frankiales;Acidothermaceae;Acidothermus;" |
|---|
| 1097 | start %i 1397655 |
|---|
| 1098 | stop %i 1399163 |
|---|
| 1099 | version %i 1 |
|---|
| 1100 | tax_embl "Bacteria;Actinobacteria;Acidothermales;Acidothermaceae;Acidothermus;" |
|---|
| 1101 | tax_embl_name "Acidothermus cellulolyticus 11B" |
|---|
| 1102 | tax_greengenes "k__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Actinomycetales;" |
|---|
| 1103 | tax_greengenes_name "Acidothermus cellulolyticus 11B" |
|---|
| 1104 | tax_ltp "Bacteria;Actinobacteria;Actinobacteria;Acidothermales;Acidothermaceae;Acidothermus" |
|---|
| 1105 | tax_ltp_name "Acidothermus cellulolyticus" |
|---|
| 1106 | tax_rdp "Bacteria;\"Actinobacteria\";Actinobacteria;Actinobacteridae;Actinomycetales;Frankineae;Acidothermaceae;Acidothermus;" |
|---|
| 1107 | tax_rdp_name "Acidothermus cellulolyticus" |
|---|
| 1108 | align_bp_score_slv %i 124 |
|---|
| 1109 | align_cutoff_head_slv %i 0 |
|---|
| 1110 | align_cutoff_tail_slv %i 0 |
|---|
| 1111 | align_ident_slv %f 90.149460 |
|---|
| 1112 | align_quality_slv %i 96 |
|---|
| 1113 | aligned_slv "2018-03-21 14:21:41" |
|---|
| 1114 | ambig_slv %f 0 |
|---|
| 1115 | ann_src_slv "EMBL;" |
|---|
| 1116 | author "Barabote R.D.; Xie G.; Leu D.H.; Normand P.; Necsulea A.; Daubin V.; Medigue C.; Adney W.S.; Xu X.C.; Lapidus A.; Parales R.E.; Detter C.; Pujic P.; Bruce D.; Lavire C.; Challacombe J.F.; Brettin T.S.; Berry A.M.; ; " |
|---|
| 1117 | culture_collection "ATCC:43068" |
|---|
| 1118 | date "2006-11-15; 2014-05-15;" |
|---|
| 1119 | description "Acidothermus cellulolyticus 11B, complete genome." |
|---|
| 1120 | embl_class "Standard" |
|---|
| 1121 | embl_division "Prokaryotes" |
|---|
| 1122 | habitat_slv "hot spring" |
|---|
| 1123 | homop_slv %f 0.33 |
|---|
| 1124 | homop_events_slv %i 5 |
|---|
| 1125 | insdc %i 16097 |
|---|
| 1126 | journal "Genome Res. 19:1033-1043 (2009)" |
|---|
| 1127 | nuc_gene_slv %i 1507 |
|---|
| 1128 | nuc_region "1397655..1399163" |
|---|
| 1129 | nuc_rp "1-2443540" |
|---|
| 1130 | pintail_slv %i 100 |
|---|
| 1131 | publication_doi "10.1101/gr.084848.108" |
|---|
| 1132 | pubmed_id "19270083" |
|---|
| 1133 | seq_quality_slv %i 94 |
|---|
| 1134 | strain "11B; ATCC 43068 e[G] l[T] r[T] s[T]" |
|---|
| 1135 | submit_author "Copeland A.; Lucas S.; Lapidus A.; Barry K.; Detter J.C.; Glavina del Rio T.; Hammon N.; Israni S.; Dalin E.; Tice H.; Pitluck S.; Zharchuk I.; Schmutz J.; Larimer F.; Land M.; Hauser L.; Kyrpides N.; Mikhailova N.; Berry A.M.; Adney W.S.; Normand P.; Leu D.; Pujic P.; Richardson P.; ; " |
|---|
| 1136 | submit_date "27-OCT-2006 US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA" |
|---|
| 1137 | tax_xref_embl "351607" |
|---|
| 1138 | title "Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations" |
|---|
| 1139 | vector_slv %f 0 |
|---|
| 1140 | ARB_color %i 10 |
|---|
| 1141 | fullname_ltp "Acidothermus cellulolyticus" |
|---|
| 1142 | hi_tax_ltp "Acidothermaceae" |
|---|
| 1143 | phyl_ltp "Bacteria/Actinobacteria/Actinobacteria" |
|---|
| 1144 | type_ltp "type sp." |
|---|
| 1145 | rel_ltp "s93" |
|---|
| 1146 | riskgroup_ltp "1" |
|---|
| 1147 | url_lpsn_ltp "http://www.bacterio.net/acidothermus.html" |
|---|
| 1148 | NJ_support_pk4_ltp "NJ_support" |
|---|
| 1149 | align_family_slv "DQ256087.1:0.82 AB778260.1:0.82 AY273185.1:0.82 FJ528304.1:0.81 GQ379228.1:0.81 AF105422.1:0.81 DQ372937.1:0.81 KU719509.1:0.81 FJ425902.1:0.8 AY684123.1:0.78 FJ527420.1:0.78 AY228479.1:0.77 L09178.1:0.72 AF399969.1:0.7 DQ413148.1:0.7 AJ011506.1:0.7 " |
|---|
| 1150 | align_filter_slv "" |
|---|
| 1151 | align_log_slv "scoring: raw=-3876.31, weight=-4003.5, query-len=1509, aligned-bases=1509, score=0.968231; " |
|---|
| 1152 | align_startpos_slv %i 1010 |
|---|
| 1153 | align_stoppos_slv %i 43283 |
|---|
| 1154 | nuc %i 1509 |
|---|
| 1155 | turn_slv "none" |
|---|
| 1156 | ARB_treetax "Bacteria/Actinobacteria/Actinobacteria" |
|---|
| 1157 | %) /*species*/ |
|---|
| 1158 | |
|---|
| 1159 | species %% (% |
|---|
| 1160 | ali_16s %% (% |
|---|
| 1161 | data :7000 "CUGGCUCAGGACGAACGCUGGCGGCGUGCCUAAUGCAUGCAAGUCGAACGAU----------UCUUCGGA---------AUGAGUGGCGCACGGCUGAGGAACACGUGACUACCUACCCCGGUGUGGGGGAUAACGGGUCGAAAGACUCGCUAAUCCCGCAUACGAUC--CGCCUGAAAG---------CCGU--AGGCGCACU--GGGCGGGGGUCGCGUCCCAUUAGAUAGUUGGUGUGGUAAUGGCGCACCAAGUCGAUGAUGGGUCUCUGGUCUGAGAGGACGACCAGACAGAUUGGGACUGAGACACGGCCCAAACUCCUACGGGGGGCAGCAGCAAGGAAUUUUCGGCAAUGGGCGCAAGCCUGACCGAGCAACGCCGCGUGGAGGAUGACGGCUUU-GGGUUGUAAACUCCUUUUGGGGGGGACGA-------------UAA------------UGACGGUACCCUCCGAAUCAGGCCCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGGCCAAGCGUUGUCCGGAAUUACUGGGCGUAAAGCGUGGGUAGGUGGUCGAUGAUGUGCCGCGUGAAAGCGCCGGAGUAAUGCCGGCGGUCGCGGUAGACAC-GUU-GACUAGAGGCUCGCAGAGGAACGUGGAAUUCCCGGUGUAGUGGUGAAAUGCGUAGAUAUCGGGAGGAACACCAGUGGCGCAAGCGGCGUUCUGGGCGAGACCUGACACUGAGCCACGACGGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCAGUAAACGAUGCAUACCAGGUGUGGGAUGCUUCGCUCGUUCCGUGCCGCAGCUUACGCGAUGAGUAUGCCGCCUGGGGACUACGAGCGCAAGCUUAAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCAGCGGAGCGUGUGGUUUAAUUCGACGCAACGCGAAGAACCUUACCUAGUCUUGACAUGCACUGCAAGCUUCGGAAAUGAAGUCG--CCUUCGAG-GGUGUGCUACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUGUGAGGUGUUACAA--GUGUCA---------CUC-----AGACUGCCGUUGUCAAAACGGAGGAAGGCGGGGAUGACGUCAAGUCCGCAUGGCCCUUACGACUAGGGCGACACACACGCUACAAUGGCUGGGAGAAUGCGCCGCGACCUGGCAACAGGCAGCGAAUCGAG-AACACCAGUCACAGUUCAGAUUGGGGGCUGCAACUCGCCCCCAUGAAGGCGGAGUUGCUAGUAAUCGCCGGUCAGCAUACGGCGGUGAAUCAGUACCCGGGCCUUGUACACACCGCCCGUCACGUCAUGGAAGUGGGAAACACCUGAAGUCCGUGGGCUAACCGCAAGGAGGCAGCGGCCGAGGGUGGGGCUCGUAACUGGGACGAAGUCGUA" |
|---|
| 1162 | %) /*ali_16s*/ |
|---|
| 1163 | |
|---|
| 1164 | name :7600 "HrpAura2" |
|---|
| 1165 | full_name "Herpetosiphon aurantiacus DSM 785" |
|---|
| 1166 | acc "CP000875" |
|---|
| 1167 | tax_slv "Bacteria;Chloroflexi;Chloroflexia;Chloroflexales;Herpetosiphonaceae;Herpetosiphon;" |
|---|
| 1168 | start %i 1974899 |
|---|
| 1169 | stop %i 1976373 |
|---|
| 1170 | version %i 1 |
|---|
| 1171 | tax_embl "Bacteria;Chloroflexi;Chloroflexia;Herpetosiphonales;Herpetosiphonaceae;Herpetosiphon;" |
|---|
| 1172 | tax_embl_name "Herpetosiphon aurantiacus DSM 785" |
|---|
| 1173 | tax_greengenes "k__Bacteria;p__Chloroflexi;c__Chloroflexi;o__Herpetosiphonales;" |
|---|
| 1174 | tax_greengenes_name "Herpetosiphon aurantiacus DSM 785" |
|---|
| 1175 | tax_ltp "Bacteria;Chloroflexi;Chloroflexia;Herpetosiphonales;Herpetosiphonaceae;Herpetosiphon" |
|---|
| 1176 | tax_ltp_name "Herpetosiphon aurantiacus" |
|---|
| 1177 | tax_rdp "Bacteria;\"Chloroflexi\";Chloroflexia;\"Herpetosiphonales\";\"Herpetosiphonaceae\";Herpetosiphon;" |
|---|
| 1178 | tax_rdp_name "Herpetosiphon aurantiacus" |
|---|
| 1179 | align_bp_score_slv %i 111 |
|---|
| 1180 | align_cutoff_head_slv %i 0 |
|---|
| 1181 | align_cutoff_tail_slv %i 0 |
|---|
| 1182 | align_ident_slv %f 73.481384 |
|---|
| 1183 | align_quality_slv %i 83 |
|---|
| 1184 | aligned_slv "2018-03-21 14:20:37" |
|---|
| 1185 | ambig_slv %f 0 |
|---|
| 1186 | ann_src_slv "EMBL;" |
|---|
| 1187 | author "Kiss H.; Nett M.; Domin N.; Martin K.; Maresca J.A.; Copeland A.; Lapidus A.; Lucas S.; Berry K.W.; Glavina Del Rio T.; Dalin E.; Tice H.; Pitluck S.; Richardson P.; Bruce D.; Goodwin L.; Han C.; Detter J.C.; Schmutz J.; Brettin T.; Land M.; Hauser L.; Kyrpides N.C.; Ivanova N.; Goker M.; Woyke T.; Klenk H.P.; Bryant D.A.; ; " |
|---|
| 1188 | culture_collection "ATCC:23779" |
|---|
| 1189 | date "2007-11-15; 2013-12-12;" |
|---|
| 1190 | description "Herpetosiphon aurantiacus DSM 785, complete genome." |
|---|
| 1191 | embl_class "Standard" |
|---|
| 1192 | embl_division "Prokaryotes" |
|---|
| 1193 | habitat_slv "freshwater habitat" |
|---|
| 1194 | homop_slv %f 0.68 |
|---|
| 1195 | homop_events_slv %i 7 |
|---|
| 1196 | insdc %i 16523 |
|---|
| 1197 | journal "Stand Genomic Sci 5:356-370 (2011)" |
|---|
| 1198 | nuc_gene_slv %i 1474 |
|---|
| 1199 | nuc_region "1974899..1976373" |
|---|
| 1200 | nuc_rp "1-6346587" |
|---|
| 1201 | pintail_slv %i 75 |
|---|
| 1202 | publication_doi "10.4056/sigs.2194987" |
|---|
| 1203 | pubmed_id "22675585" |
|---|
| 1204 | seq_quality_slv %i 88 |
|---|
| 1205 | strain "e[G] l[T] r[T] s[T]" |
|---|
| 1206 | submit_author "Copeland A.; Lucas S.; Lapidus A.; Barry K.; Glavina del Rio T.; Dalin E.; Tice H.; Pitluck S.; Kiss H.; Brettin T.; Bruce D.; Detter J.C.; Han C.; Schmutz J.; Larimer F.; Land M.; Hauser L.; Kyrpides N.; Kim E.; Bryant D.; Richardson P.; ; " |
|---|
| 1207 | submit_date "30-OCT-2007 US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA" |
|---|
| 1208 | tax_xref_embl "316274" |
|---|
| 1209 | title "Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T))" |
|---|
| 1210 | vector_slv %f 0 |
|---|
| 1211 | ARB_color %i 10 |
|---|
| 1212 | fullname_ltp "Herpetosiphon aurantiacus" |
|---|
| 1213 | hi_tax_ltp "Herpetosiphonaceae" |
|---|
| 1214 | phyl_ltp "Bacteria/Chloroflexi/Chloroflexia/Herpetosiphonales" |
|---|
| 1215 | type_ltp "type sp." |
|---|
| 1216 | rel_ltp "s102" |
|---|
| 1217 | riskgroup_ltp "1" |
|---|
| 1218 | url_lpsn_ltp "http://www.bacterio.net/herpetosiphon.html" |
|---|
| 1219 | NJ_support_pk4_ltp "NJ_support" |
|---|
| 1220 | align_family_slv "KU719509.1:0.69 L09178.1:0.68 AY273185.1:0.67 FJ528304.1:0.66 DQ256087.1:0.66 AB778260.1:0.65 AJ420330.1:0.65 FJ425909.1:0.65 DQ372937.1:0.65 AF105422.1:0.65 X95919.1:0.64 Y10757.1:0.64 X95920.1:0.64 X95918.1:0.64 FR733718.1:0.64 AF208315.1:0.64 " |
|---|
| 1221 | align_filter_slv "" |
|---|
| 1222 | align_log_slv "shifting bases to fit in 1 bases at pos 1772 to 1772;shifting bases to fit in 2 bases at pos 16298 to 16299;total inserted bases=8;longest insertion=3;total inserted bases before shifting=1;scoring: raw=-3184.62, weight=-3813.5, query-len=1475, aligned-bases=1475, score=0.835092; " |
|---|
| 1223 | align_startpos_slv %i 1006 |
|---|
| 1224 | align_stoppos_slv %i 43282 |
|---|
| 1225 | nuc %i 1475 |
|---|
| 1226 | turn_slv "none" |
|---|
| 1227 | ARB_treetax "Bacteria/Chloroflexi/Chloroflexia/Herpetosiphonales" |
|---|
| 1228 | %) /*species*/ |
|---|
| 1229 | |
|---|
| 1230 | species %% (% |
|---|
| 1231 | ali_16s %% (% |
|---|
| 1232 | data :7000 "NUGGCUCAGGACGAACGCUGGCGGCGUGCCUAACACAUGCAAGUCGAACGAG--AUU-U--UAGCA--AUAA-A---AUCUUAGUGGCGAACGGGUGAGUAACGCGUAGACACCUGCCUUCUAGCUGGGGACAACACCGCGAAAGUGGUGCUAAUACCGAAUGU-AGUGCAUGCUUAAAGGUGGCCUCUUUAUAAGCUAUCACUAGAAGAUGGGUCUGCGUCUGAUUAGCUAGUUGGUGAGGUAAUGGCUCACCAAGGCGACGAUCAGUAGCCGGUCUGAGAGGAUGAACGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUCUUCCGCAAUGGACGAAAGUCUGACGGAGCAACGCCGCGUGAGUGAAGAAGGUUUUCGGAUCGUAAAACUCUGUUUUCAGGGACGAAUGUUGGAUUGUAAAUAAUGAUUCAUAAUGACGGUACCUGACAAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGCGCGCGCAGGUGGGAUAAUCAGUCUGAUGUUAAAGUUCGGGGCUUAACCCCGUGA-AGCAUUGGAUACUGUUAUUCUUGAGUGCAGGAGAGGAAAGUGGAAUUCCUAGUGUAGCGGUGAAAUGCGUAGAUAUUAGGAGGAACACCAGUGGCGAAGGCGACUUUCUGGACUGUGUCUGACACUGAGGCGCGAAAGCCAGGGUAGUGAACGGGAUUAGAUACCCCGGUAAUCCUGGCCGUAAACGAUGGGUACUAGGUGUUGGGGGUAUCGACCCUCCAGUGCCGGAGUUAACGCAAUAAGUACCCCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGUAUGUGGUUUAAUUCGACGCAACGCGAAGAACCUUACCAAGGCUUGACAUCGUCUGAUGACUCUAGAGAUAGGUUCU--CCUUCGGGAGCAGAUAGACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUAUGUUGCCAGCACGUAAUGGUGGGAACUCAUGGGAGACUGCCGUGGAUAACACGGAG-AAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCUUGGGCUACACACGUACUACAAUGGCUUAAAUAGAGGGUAGCGAAGCCGCGAGGUGAAGCCAAACCCAAAAACAAGCUCUCAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUGAAGUCGGAAUCGCUAGUAAUCGCAGAUCAG-AUGCUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAAAGUUGAGAGCACCCGAAGCCGGUGAGGUAACCGAAUGGAACCAGCCGUCGAAGGUGAGAUCAGUGAUUGGGGUGAAGUCGUA" |
|---|
| 1233 | %) /*ali_16s*/ |
|---|
| 1234 | |
|---|
| 1235 | name :7600 "PesPropi" |
|---|
| 1236 | full_name "Pelosinus propionicus" |
|---|
| 1237 | acc "AM258975" |
|---|
| 1238 | tax_slv "Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Pelosinus;" |
|---|
| 1239 | start %i 1 |
|---|
| 1240 | stop %i 1580 |
|---|
| 1241 | version %i 1 |
|---|
| 1242 | tax_embl "Bacteria;Firmicutes;Negativicutes;Selenomonadales;Sporomusaceae;Pelosinus;" |
|---|
| 1243 | tax_embl_name "Pelosinus propionicus" |
|---|
| 1244 | tax_greengenes "k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Veillonellaceae;g__Pelosinus;" |
|---|
| 1245 | tax_greengenes_name "Pelosinus propionicus" |
|---|
| 1246 | tax_ltp "Bacteria;Firmicutes;Negativicutes;Selenomonadales;Sporomusaceae;Pelosinus" |
|---|
| 1247 | tax_ltp_name "Pelosinus propionicus" |
|---|
| 1248 | tax_rdp "Bacteria;Firmicutes;Negativicutes;Selenomonadales;Veillonellaceae;Pelosinus;" |
|---|
| 1249 | tax_rdp_name "Pelosinus propionicus" |
|---|
| 1250 | align_bp_score_slv %i 116 |
|---|
| 1251 | align_cutoff_head_slv %i 0 |
|---|
| 1252 | align_cutoff_tail_slv %i 25 |
|---|
| 1253 | align_ident_slv %f 77.514793 |
|---|
| 1254 | align_quality_slv %i 86 |
|---|
| 1255 | aligned_slv "2018-03-21 13:56:34" |
|---|
| 1256 | ambig_slv %f 0.13 |
|---|
| 1257 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 1258 | author "Boga H.I.; Ji R.; Ludwig W.; Brune A.; ; " |
|---|
| 1259 | country "Republic of the Congo" |
|---|
| 1260 | date "2007-01-02; 2007-01-02;" |
|---|
| 1261 | description "Sporotalea propionica partial 16S rRNA gene, type strain TmPN3T" |
|---|
| 1262 | embl_class "Standard" |
|---|
| 1263 | embl_division "Prokaryotes" |
|---|
| 1264 | gene "16S rRNA" |
|---|
| 1265 | habitat_slv "intestinal tract of Thoracotermes macrothorax" |
|---|
| 1266 | homop_slv %f 0.2 |
|---|
| 1267 | homop_events_slv %i 3 |
|---|
| 1268 | host "Termite" |
|---|
| 1269 | isolation_source "Thoracotermes macrothorax" |
|---|
| 1270 | journal "Arch. Microbiol. 187:15-27 (2007)" |
|---|
| 1271 | nuc_gene_slv %i 1549 |
|---|
| 1272 | nuc_region "1..1580" |
|---|
| 1273 | nuc_rp "1-1580" |
|---|
| 1274 | pintail_slv %i 100 |
|---|
| 1275 | publication_doi "10.1007/s00203-006-0168-7" |
|---|
| 1276 | pubmed_id "17031618" |
|---|
| 1277 | seq_quality_slv %i 94 |
|---|
| 1278 | strain "type strain:TmPN3=DSM 13327=ATCC BAA-626 l[T] r[T] s[T]" |
|---|
| 1279 | submit_author "Brune A.; ; " |
|---|
| 1280 | submit_date "07-APR-2006 Brune A., Dept. of Biogeochemistry, MPI for Terrestrial Microbiology, Karl-von-Frisch-Strasse, 35043 Marburg, GERMANY." |
|---|
| 1281 | tax_xref_embl "380084" |
|---|
| 1282 | title "Sporotalea propionica gen. nov. sp. nov., a hydrogen-oxidizing, oxygen-reducing, propionigenic firmicute from the intestinal tract of a soil-feeding termite" |
|---|
| 1283 | vector_slv %f 0 |
|---|
| 1284 | ARB_color %i 12 |
|---|
| 1285 | fullname_ltp "Pelosinus propionicus" |
|---|
| 1286 | hi_tax_ltp "Sporomusaceae" |
|---|
| 1287 | phyl_ltp "Bacteria/Firmicutes, Tenericutes, Negativicutes and Cyanobacteria/Negativicutes/Selenomonadales and Veillonellales" |
|---|
| 1288 | rel_ltp "s93" |
|---|
| 1289 | riskgroup_ltp "1" |
|---|
| 1290 | url_lpsn_ltp "http://www.bacterio.net/pelosinus.html" |
|---|
| 1291 | NJ_support_pk4_ltp "NJ_support" |
|---|
| 1292 | align_family_slv "L09178.1:0.72 DQ256087.1:0.72 AY273185.1:0.72 AF105422.1:0.71 FJ425902.1:0.71 DQ372937.1:0.71 AB778260.1:0.71 AJ420330.1:0.71 FJ528304.1:0.71 FR733718.1:0.71 FR749942.1:0.71 AF208315.1:0.7 AF192343.1:0.7 FR749910.1:0.7 X95918.1:0.7 Y10760.1:0.7 " |
|---|
| 1293 | align_filter_slv "" |
|---|
| 1294 | align_log_slv "shifting bases to fit in 1 bases at pos 9907 to 9907;shifting bases to fit in 3 bases at pos 32523 to 32525;total inserted bases=10;longest insertion=4;total inserted bases before shifting=1;scoring: raw=-3488.5, weight=-4042.88, query-len=1580, aligned-bases=1555, score=0.862876; " |
|---|
| 1295 | align_startpos_slv %i 1006 |
|---|
| 1296 | align_stoppos_slv %i 43312 |
|---|
| 1297 | nuc %i 1580 |
|---|
| 1298 | turn_slv "none" |
|---|
| 1299 | ARB_treetax "Bacteria/Firmicutes, Tenericutes, Negativicutes and Cyanobacteria/Negativicutes/Selenomonadales and Veillonellales" |
|---|
| 1300 | %) /*species*/ |
|---|
| 1301 | |
|---|
| 1302 | species %% (% |
|---|
| 1303 | ali_16s %% (% |
|---|
| 1304 | data :7000 "............CAAAG-UGCCA---CCCCUCAUACGGGAGAGUCGAACUAG--GAU-UGAGUGUU-AA-G--AA-UUAGUUAGUGGCGGACGGGUGAGUAACGCGUGGAUACCUACCUAGUAGACCGGGACAACCCUUGGAAACGAGGGCUAAUACCGGAUAAGGUGGCAUCACGAAAGAUGGC--CCUGAAGAGCUAUCGUUAGUAGAUGGAUCCGCGUCUGAUUAGCUAGUUGGUGGGGUAAAGGCCUACCAAGGCGACGAUCAGUAGCCGGCCUGAGAGGGUGAACGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUCUUCCGCAAUGGACGAAAGUCUGACGGAGCAACGCCGCGUGUACGACGAAGGCCUUCGGGUUGUAAAGUACUGUCUUCAGGGACGAAGGUAAGUAUGUAAAGA-UGUACUUACAUGACGGUACCUGAGGAGGAAGCCCCGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGGGGCAAGCGUUGUCCGGAAUCAUUGGGCGUAAAGGGCGCGUAGGCGGAUACUUAAGUCUGGUGUGAAAACCUAGGGCUCAACCCUGGGACUGCAUCGGAAACUGGGUAUCUUGAGGACAGGAGAGGAAAGUGGAAUUCCACGUGUAGCGGUGAAAUGCGUAGAUAUGUGGAGGAACACCAGUGGCGAAGGCGACUUUCUGGACUGUAACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAGGUGUAGAGGGUAUCGACCCUUCUGUGCCGCAGUUAACACACUAAGCACUCCGCCUGGGGAGUACGGCCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGACGCAACGCGAAGAACCUUACCAAGGCUUGACAUCCAUAGAAUCCUGUGGAAACAUGGGAGUGCCUUCGGGAGCUAUGAGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUAUGUUUAGUUGCUAACGCGUAAUGGUGAGCACUCUAGACAGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGUCUUGGGCUACACACGUGCUACAAUGGCCAGUACAGACGGAAGCGAAGCCGUGAGGUGAAGCCAAUCCGAGAAAGCUGGUCUCAGUUCGGAUUGUUCUCUGCAACUCGAGAACAUGAAGUCGGAAUCGCUAGUAAUCGCAGGUCAG-AUACUGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAAAGUCUGCAACACCCGAAGCCGGUGAGGUAACCGAAAGGAGCUAGCCGUCGAAGGUGGGGCCGAUGAUUGGGGUGAAGUCGUA" |
|---|
| 1305 | %) /*ali_16s*/ |
|---|
| 1306 | |
|---|
| 1307 | name :7600 "DstHafn2" |
|---|
| 1308 | full_name "Desulfitobacterium hafniense DCB-2" |
|---|
| 1309 | acc "CP001336" |
|---|
| 1310 | tax_slv "Bacteria;Firmicutes;Clostridia;Clostridiales;Peptococcaceae;Desulfitobacterium;" |
|---|
| 1311 | start %i 3389423 |
|---|
| 1312 | stop %i 3391083 |
|---|
| 1313 | version %i 1 |
|---|
| 1314 | tax_embl "Bacteria;Firmicutes;Clostridia;Clostridiales;Peptococcaceae;Desulfitobacterium;" |
|---|
| 1315 | tax_embl_name "Desulfitobacterium hafniense DCB-2" |
|---|
| 1316 | tax_greengenes "k__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Peptococcaceae;g__Desulfosporosinus;s__meridiei;" |
|---|
| 1317 | tax_greengenes_name "Desulfitobacterium hafniense DCB-2" |
|---|
| 1318 | tax_ltp "Bacteria;Firmicutes;Clostridia;Clostridiales;Peptococcaceae;Desulfitobacterium" |
|---|
| 1319 | tax_ltp_name "Desulfitobacterium hafniense" |
|---|
| 1320 | tax_rdp "Bacteria;Firmicutes;Clostridia;Clostridiales;Peptococcaceae 1;Desulfitobacterium;" |
|---|
| 1321 | tax_rdp_name "Desulfitobacterium hafniense" |
|---|
| 1322 | align_bp_score_slv %i 114 |
|---|
| 1323 | align_cutoff_head_slv %i 113 |
|---|
| 1324 | align_cutoff_tail_slv %i 0 |
|---|
| 1325 | align_ident_slv %f 79.802635 |
|---|
| 1326 | align_quality_slv %i 91 |
|---|
| 1327 | aligned_slv "2018-03-21 13:55:32" |
|---|
| 1328 | ambig_slv %f 0 |
|---|
| 1329 | ann_src_slv "EMBL; RNAmmer;" |
|---|
| 1330 | author "Kim S.H.; Harzman C.; Davis J.K.; Hutcheson R.; Broderick J.B.; Marsh T.L.; Tiedje J.M.; ; " |
|---|
| 1331 | date "2009-01-07; 2014-05-15;" |
|---|
| 1332 | description "Desulfitobacterium hafniense DCB-2, complete genome." |
|---|
| 1333 | embl_class "Standard" |
|---|
| 1334 | embl_division "Prokaryotes" |
|---|
| 1335 | habitat_slv "sludge" |
|---|
| 1336 | homop_slv %f 0.12 |
|---|
| 1337 | homop_events_slv %i 2 |
|---|
| 1338 | insdc %i 205 |
|---|
| 1339 | journal "BMC Microbiol. 12:21-21 (2012)" |
|---|
| 1340 | nuc_gene_slv %i 1554 |
|---|
| 1341 | nuc_region "3389423..3391083" |
|---|
| 1342 | nuc_rp "1-5279134" |
|---|
| 1343 | pintail_slv %i 95 |
|---|
| 1344 | publication_doi "10.1186/1471-2180-12-21" |
|---|
| 1345 | pubmed_id "22316246" |
|---|
| 1346 | seq_quality_slv %i 97 |
|---|
| 1347 | strain "DCB-2 e[G] l[T] r[T] s[T]" |
|---|
| 1348 | submit_author "Lucas S.; Copeland A.; Lapidus A.; Glavina del Rio T.; Dalin E.; Tice H.; Bruce D.; Goodwin L.; Pitluck S.; Chertkov O.; Brettin T.; Detter J.C.; Han C.; Kuske C.R.; Larimer F.; Land M.; Hauser L.; Kyrpides N.; Ovchinnikova G.; Madsen T.; Christiansen N.; Ahring B.; Marsh T.; Harzman C.; Davis J.K.; Kim S.-H.; Tiedje J.M.; ; " |
|---|
| 1349 | submit_date "29-DEC-2008 US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA" |
|---|
| 1350 | tax_xref_embl "272564" |
|---|
| 1351 | title "Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction" |
|---|
| 1352 | vector_slv %f 0 |
|---|
| 1353 | ARB_color %i 12 |
|---|
| 1354 | fullname_ltp "Desulfitobacterium hafniense" |
|---|
| 1355 | hi_tax_ltp "Peptococcaceae" |
|---|
| 1356 | phyl_ltp "Bacteria/Firmicutes, Tenericutes, Negativicutes and Cyanobacteria/Other Peptococcaceae" |
|---|
| 1357 | rel_ltp "s104" |
|---|
| 1358 | riskgroup_ltp "1" |
|---|
| 1359 | url_lpsn_ltp "http://www.bacterio.net/desulfitobacterium.html" |
|---|
| 1360 | align_family_slv "AY273185.1:0.76 FJ425909.1:0.76 FJ528304.1:0.75 DQ256087.1:0.75 AJ420330.1:0.75 AF105422.1:0.75 L09178.1:0.75 FJ425902.1:0.74 DQ372937.1:0.74 AB778260.1:0.74 AJ011506.1:0.73 AF208315.1:0.73 GQ379228.1:0.73 FR733718.1:0.73 FR749942.1:0.73 X95918.1:0.73 KU719509.1:0.73 DQ413148.1:0.73 KX602193.1:0.73 AY684123.1:0.73 X99469.1:0.73 X94198.1:0.73 FJ527420.1:0.73 AB201043.1:0.72 GU993265.1:0.72 Y10763.1:0.72 Y10756.1:0.72 Y10754.1:0.72 AF192343.1:0.72 Y10762.1:0.72 Y10757.1:0.72 X95920.1:0.72 Y10759.1:0.72 X95921.1:0.72 Y10758.1:0.72 Y10755.1:0.72 Y10760.1:0.72 X95919.1:0.72 FR749910.1:0.72 AF399969.1:0.72 " |
|---|
| 1361 | align_filter_slv "" |
|---|
| 1362 | align_log_slv "shifting bases to fit in 1 bases at pos 1106 to 1106;shifting bases to fit in 2 bases at pos 1113 to 1114;shifting bases to fit in 2 bases at pos 1137 to 1138;shifting bases to fit in 1 bases at pos 5207 to 5207;total inserted bases=11;longest insertion=3;total inserted bases before shifting=1;scoring: raw=-3600.87, weight=-3921.6, query-len=1661, aligned-bases=1548, score=0.918216; " |
|---|
| 1363 | align_startpos_slv %i 892 |
|---|
| 1364 | align_stoppos_slv %i 43277 |
|---|
| 1365 | nuc %i 1661 |
|---|
| 1366 | turn_slv "none" |
|---|
| 1367 | ARB_treetax "Bacteria/Firmicutes, Tenericutes, Negativicutes and Cyanobacteria/Other Peptococcaceae" |
|---|
| 1368 | %) /*species*/ |
|---|
| 1369 | |
|---|
| 1370 | species %% (% |
|---|
| 1371 | ali_16s %% (% |
|---|
| 1372 | data :7000 "CUGGCUCAGGGUGAACGCUGGCGGCGCGCCUAACACAUGCAAGUCGAACGAG--AAAGGGU-AGCUUGCUACCC-GAGUAAGAGUGGCGAACGGGUGAGUAAAGCGUAGGAAUCUGCCCAAAGGACCGGGAUAACUGCUGGAAACGGUAGAUAAGACCGGAUAAGCCCGAGAGGGGAAAGU--------AUCG--GAGAUAGCCGAAGGAGGGGCCUACGUCCCAUCAGGUAGUUGGAAGUGUAAGAGACUCCCAAGCCGACGACGGGUAGCCGAUGUGAGAGCAUGAUCGGCCACAAGGGCACUGAGACACGGGUCCUACUCCUACGGGAGGCAGCAGUGGGGAAUUUUGGACAAUGGACGGAAGUCUGAUCCAGCGACGCCGCGUGAAGGAAGAAGUCCUUGGGAU-GUAAACUUCUGAACUUAUCAAUAAAGACAACUGGGGACAG----UUGGA---UGAAGGUAGAUAAAGAA-AAGCCCCGGCUAACUACGUGCCAGCAGCCGCGGUAAGACGUAGGGGGCGAGCGUUGCCCGGAAUUACUGGGCGUAUNGGGGGCGUAGGCGGUCAAAUAAGUCAGAUGUGAAAUACUACUGCUCAACGGUAGAAAUGCGUUUGAAACUGUAAGACUUGAGGGUACCAAAGGUAGACGGAAUUACCUGAGUAGGGGUGAAAUCCGUAGAUACAGGUAAGAACGCCGU-GGGGAAGCCGGUCUACUGGGGUAACCCUGACGCUGAGGCCCGAAAGCUAGGGGAGCGAACCGGAUUAGAUACCCGGGUAGUCCUAGCAGUAAACGAUGCUCACUAGGUGU-GGAG--AGUGAAUUCUCCGUGCUGAAGCGAACGCGAUAAGUGAGCCGCCUGGGGAGUACGGCCGCAUGGCUGAAACUCAAAGGAAUUGACGGGGGUCCGCACAAGCGGNGGAGCAUGUGGUUUAAUUCGAAGCAAC-CGAAGAACCUUACCAGGNAAUGACAUGGAGAUAAGGGUAUAGAGAUAUAUCCANGACUUAGGUCAGUCUCACACAGGUGANGCACGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCACAACGAGCGCAACCCCUACCAUUAGUUGCCAGCGAGUAAAGUUGGGCACUCUAAUGGGACAGCCGUCG-CGAGUCGGAGGAAGGAGGGGAUGACGUCAGGUAAGCGUGCCCCUUAUGCUCUGGGCGACACACGUGCUACAAUGGUACGGGCAGAGGGCAGCGAAACUGUGAAGUGAAGCG-AGAUCUAAAAACGUGCCGUAAUUCGGAGUGUAGUCUG-AAC-CGACUACAUGAAACCGGAAUNGCUAGUAAUCGCAGGUCAGCAAACUGCGGUGAAUACGUUCCCGGACCUUGUACACACCGCCCGUCACGCCACCGGAGUUGGAGACGCCCGAAAAUGGUAGCAUAACCGCAAGGAGUGAGAAC-UUACAGGAAAAGGAGCGA---GGCCA--------" |
|---|
| 1373 | %) /*ali_16s*/ |
|---|
| 1374 | |
|---|
| 1375 | name :7600 "OcgTerie" |
|---|
| 1376 | full_name "Oceanotoga teriensis" |
|---|
| 1377 | acc "EU588727" |
|---|
| 1378 | tax_slv "Bacteria;Thermotogae;Thermotogae;Petrotogales;Petrotogaceae;Oceanotoga;" |
|---|
| 1379 | start %i 1 |
|---|
| 1380 | stop %i 1469 |
|---|
| 1381 | version %i 1 |
|---|
| 1382 | tax_embl "Bacteria;Thermotogae;Thermotogales;Thermotogaceae;Oceanotoga;" |
|---|
| 1383 | tax_embl_name "Oceanotoga teriensis" |
|---|
| 1384 | tax_greengenes "k__Bacteria;p__Thermotogae;c__Thermotogae;o__Thermotogales;f__Thermotogaceae;g__Geotoga;" |
|---|
| 1385 | tax_greengenes_name "Oceanotoga teriensis" |
|---|
| 1386 | tax_ltp "Bacteria;Thermotogae;Thermotogae;Petrotogales;Petrotogaceae;Oceanotoga" |
|---|
| 1387 | tax_ltp_name "Oceanotoga teriensis" |
|---|
| 1388 | tax_rdp "Bacteria;\"Thermotogae\";Thermotogae;Petrotogales;Petrotogaceae;Oceanotoga;" |
|---|
| 1389 | tax_rdp_name "Oceanotoga teriensis" |
|---|
| 1390 | align_bp_score_slv %i 105 |
|---|
| 1391 | align_cutoff_head_slv %i 0 |
|---|
| 1392 | align_cutoff_tail_slv %i 0 |
|---|
| 1393 | align_ident_slv %f 69.761269 |
|---|
| 1394 | align_quality_slv %i 82 |
|---|
| 1395 | aligned_slv "2018-03-21 13:53:08" |
|---|
| 1396 | ambig_slv %f 0.41 |
|---|
| 1397 | ann_src_slv "EMBL; RDP; RNAmmer;" |
|---|
| 1398 | author "Jayasinghearachchi H.S.; Lal B.; ; " |
|---|
| 1399 | country "India" |
|---|
| 1400 | date "2008-04-08; 2012-11-14;" |
|---|
| 1401 | description "Oceanotoga teriensis strain OCT74 16S ribosomal RNA gene, partial sequence." |
|---|
| 1402 | embl_class "Standard" |
|---|
| 1403 | embl_division "Prokaryotes" |
|---|
| 1404 | homop_slv %f 0.27 |
|---|
| 1405 | homop_events_slv %i 4 |
|---|
| 1406 | isolation_source "oil production wells" |
|---|
| 1407 | journal "Int. J. Syst. Evol. Microbiol. 61:554-560 (2011)" |
|---|
| 1408 | nuc_gene_slv %i 1469 |
|---|
| 1409 | nuc_region "1..1469" |
|---|
| 1410 | nuc_rp "1-1469" |
|---|
| 1411 | pintail_slv %i 100 |
|---|
| 1412 | publication_doi "10.1099/ijs.0.018036-0" |
|---|
| 1413 | pubmed_id "20382783" |
|---|
| 1414 | seq_quality_slv %i 88 |
|---|
| 1415 | strain "OCT74 l[T] r[T] s[T]" |
|---|
| 1416 | submit_author "Jayasinghearachchi H.S.; Lal B.; Sarma P.M.; ; " |
|---|
| 1417 | submit_date "12-MAR-2008 Microbial Biotechnology, The Energy and Resource Institute, Habitat Place, Lordhi Road, Nwe Delhi 110003, India" |
|---|
| 1418 | tax_xref_embl "515440" |
|---|
| 1419 | title "Oceanotoga teriensis gen. nov., sp. nov., a thermophilic bacterium isolated from offshore oil-producing wells" |
|---|
| 1420 | vector_slv %f 0 |
|---|
| 1421 | ARB_color %i 10 |
|---|
| 1422 | fullname_ltp "Oceanotoga teriensis" |
|---|
| 1423 | hi_tax_ltp "Petrotogaceae" |
|---|
| 1424 | phyl_ltp "Bacteria/Thermotogae/Petrotogales" |
|---|
| 1425 | type_ltp "type sp." |
|---|
| 1426 | rel_ltp "s106" |
|---|
| 1427 | url_lpsn_ltp "http://www.bacterio.net/oceanotoga.html" |
|---|
| 1428 | align_family_slv "KP261822.1:0.58 KX602193.1:0.54 FJ425909.1:0.53 AJ011506.1:0.53 AB201043.1:0.53 AJ420330.1:0.53 DQ413148.1:0.53 DQ372937.1:0.51 AB778260.1:0.51 DQ256087.1:0.51 FJ425902.1:0.5 FJ528304.1:0.5 AY273185.1:0.5 AF105422.1:0.5 L09178.1:0.48 KX870191.1:0.47 " |
|---|
| 1429 | align_filter_slv "" |
|---|
| 1430 | align_log_slv "shifting bases to fit in 1 bases at pos 9884 to 9884;shifting bases to fit in 1 bases at pos 15640 to 15640;total inserted bases=8;longest insertion=2;total inserted bases before shifting=1;scoring: raw=-3054.69, weight=-3705.38, query-len=1469, aligned-bases=1469, score=0.824394; " |
|---|
| 1431 | align_startpos_slv %i 1012 |
|---|
| 1432 | align_stoppos_slv %i 43231 |
|---|
| 1433 | nuc %i 1469 |
|---|
| 1434 | turn_slv "none" |
|---|
| 1435 | riskgroup_ltp "1" |
|---|
| 1436 | ARB_treetax "Bacteria/Thermotogae/Petrotogales" |
|---|
| 1437 | %) /*species*/ |
|---|
| 1438 | |
|---|
| 1439 | species %% (% |
|---|
| 1440 | ali_16s %% (% |
|---|
| 1441 | data :7000 "CUGCCGGAGGCC-ACCGCUAUCGGGGCCGCUAAGCCAUGCAAGUCGAGGGCG--CC--------C-GGCAAU---GGGGGCGCCCGGCGGACGGCUCAGUAACACGUGGGUACCUACCCUCGGGACGGGGAUAACCCCGGGAAAGUGGGGCUAAUCCCCGAUA--GCCGGAAGGUGAAAGGCCCGGGCCCAUGCCGGGUCCGCCCGAGGAUGGGCCUGCGGCCGAUUAGGUAGUUGGCGGGGUAACGGCCCGCCAAGCCGAUAAUCGGUACGGGCGGUGAGAGCCGGAGCCCGGAGACGGGGACUGAGACAAGGCCCCGGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAUGCGGGCAACCGCGACGGGGGGACCCCGAGUG-CCGUCGGGGC--AAAGCCCCG--G-CGGCUGUACCGGGGU---------------GUAAAAA-----------------GCCCCGGGAGAAAGCGGCGGC-AAGCCGCUGCCAGCCGCCGCGGUAAUAGCGGCGCCGCAAGUGGUGGCCGCUUUUAUUGGGCCUAAAGGGGCCGUAGCCGGUCCCGUGGGUCCCCGCCGAAAGCCCGCGGCUUAACC-GCGGGAUCGGGGGGAAACUGCGGGACUUGGGACCGGGAGAGGCCGGAGGUACCCCCGGGGUAGGGGUGAAAUCCUGUCAUCCCGGGGGGACCGCCGU-GGCGAAGGCGUCCGGCUGGAAC-GGUCCGACGGUGAGGGCCGAAAGCCGGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCCGGCUGUAAACGAUGCGGACUAGGUGUUGGGGCGCACGACGCCCCAGUGCCGUAGGGAAGCCGUUAAGUCCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUUAAAGGAAUUGGCGGGGGAGCACACAACCGGUGGAGCCUGCGGUUUAAUUGGAUUCAACGCCGGAAACCUUACCGGGGG---CGACGCAGUGAAGGCAGGUGACGACCUGCCG----GACG----AGCUG-AG-AGGAGGUGCAUGGCCGCCGUCAGCUCGUGCCGUGAGGUGUCCUGUUAAGUCAGGUAACGAGCGAGACCCCCGCCCGCAGUUGCCAGCGGGUAACGCCGGGCACUCUGCGGGGAUCGCCGCCG-UAAGGCGGAUGAAAGUGGGGGCGACGGCAGGUCCGUAUGCCCCGAAACCCCCGGGCUACACGCGGGCUACAAUGGCGGGGACAAUGGGAUCCGACCCCGAAAGGGGGAGGA-AUCCCCUAAACCCCGUCGUAGUUCGGAUUGCGGGCUGCAACUCGCCCGCAUGAAGGUGGAAUCGGUAGUAACCGUGCCUCAGAAUGGCACGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGUCACGCCACCCGAGCC--CCCCGGGGCAAGCCCCC-GGUC--C-GCAA-G-GGCUGGGGGCGAGCCCCCGGGGGGUGAGGGGGGCGAAGUCGUA" |
|---|
| 1442 | %) /*ali_16s*/ |
|---|
| 1443 | |
|---|
| 1444 | name :7600 "MtpKand2" |
|---|
| 1445 | full_name "Methanopyrus kandleri AV19" |
|---|
| 1446 | acc "AE009439" |
|---|
| 1447 | tax_slv "Archaea;Euryarchaeota;Methanopyri;Methanopyrales;Methanopyraceae;Methanopyrus;" |
|---|
| 1448 | start %i 516778 |
|---|
| 1449 | stop %i 518289 |
|---|
| 1450 | version %i 1 |
|---|
| 1451 | tax_embl "Archaea;Euryarchaeota;Methanopyri;Methanopyrales;Methanopyraceae;Methanopyrus;" |
|---|
| 1452 | tax_embl_name "Methanopyrus kandleri AV19" |
|---|
| 1453 | tax_greengenes "k__Archaea;p__Euryarchaeota;c__Methanopyri;o__Methanopyrales;f__Methanopyraceae;g__Methanopyrus;s__kandleri;" |
|---|
| 1454 | tax_greengenes_name "Methanopyrus kandleri AV19" |
|---|
| 1455 | tax_ltp "Archaea;Euryarchaeota;Methanopyri;Methanopyrales;Methanopyraceae;Methanopyrus" |
|---|
| 1456 | tax_ltp_name "Methanopyrus kandleri" |
|---|
| 1457 | tax_rdp "Archaea;\"Euryarchaeota\";Methanopyri;Methanopyrales;Methanopyraceae;Methanopyrus;" |
|---|
| 1458 | tax_rdp_name "Methanopyrus kandleri" |
|---|
| 1459 | align_bp_score_slv %i 124 |
|---|
| 1460 | align_cutoff_head_slv %i 0 |
|---|
| 1461 | align_cutoff_tail_slv %i 0 |
|---|
| 1462 | align_ident_slv %f 79.776756 |
|---|
| 1463 | align_quality_slv %i 91 |
|---|
| 1464 | aligned_slv "2018-03-21 13:49:53" |
|---|
| 1465 | ambig_slv %f 0 |
|---|
| 1466 | ann_src_slv "EMBL; RNAmmer;" |
|---|
| 1467 | author "Slesarev A.I.; Mezhevaya K.V.; Makarova K.S.; Polushin N.N.; Shcherbinina O.V.; Shakhova V.V.; Belova G.I.; Aravind L.; Natale D.A.; Rogozin I.B.; Tatusov R.L.; Wolf Y.I.; Stetter K.O.; Malykh A.G.; Koonin E.V.; Kozyavkin S.A.; ; " |
|---|
| 1468 | date "2002-07-18; 2014-05-15;" |
|---|
| 1469 | description "Methanopyrus kandleri AV19, complete genome." |
|---|
| 1470 | embl_class "Standard" |
|---|
| 1471 | embl_division "Prokaryotes" |
|---|
| 1472 | habitat_slv "hydrothermal vent" |
|---|
| 1473 | homop_slv %f 1.6 |
|---|
| 1474 | homop_events_slv %i 19 |
|---|
| 1475 | insdc %i 294 |
|---|
| 1476 | journal "Proc. Natl. Acad. Sci. U.S.A. 99:4644-4649 (2002)" |
|---|
| 1477 | nuc_gene_slv %i 1512 |
|---|
| 1478 | nuc_region "516778..518289" |
|---|
| 1479 | nuc_rp "1-1694969" |
|---|
| 1480 | pintail_slv %i 100 |
|---|
| 1481 | publication_doi "10.1073/pnas.032671499" |
|---|
| 1482 | pubmed_id "11930014" |
|---|
| 1483 | seq_quality_slv %i 73 |
|---|
| 1484 | strain "AV19 e[G] l[T] r[T] s[T]" |
|---|
| 1485 | submit_author "Slesarev A.I.; Mezhevaya K.V.; Makarova K.S.; Polushin N.N.; Shcherbinina O.V.; Shakhova V.V.; Belova G.I.; Aravind L.; Natale D.A.; Rogozin I.B.; Tatusov R.L.; Wolf Y.I.; Stetter K.O.; Malykh A.G.; Koonin E.V.; Kozyavkin S.A.; ; " |
|---|
| 1486 | submit_date "04-FEB-2002 Fidelity Systems, Inc., Gaithersburg, MD 20879, USA" |
|---|
| 1487 | tax_xref_embl "190192" |
|---|
| 1488 | title "The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens" |
|---|
| 1489 | vector_slv %f 0 |
|---|
| 1490 | ARB_color %i 10 |
|---|
| 1491 | fullname_ltp "Methanopyrus kandleri" |
|---|
| 1492 | hi_tax_ltp "Methanopyraceae" |
|---|
| 1493 | phyl_ltp "Archaea/Euryarchaeota" |
|---|
| 1494 | type_ltp "type sp." |
|---|
| 1495 | rel_ltp "s100" |
|---|
| 1496 | riskgroup_ltp "1" |
|---|
| 1497 | url_lpsn_ltp "http://www.bacterio.net/methanopyrus.html" |
|---|
| 1498 | NJ_support_pk4_ltp "NJ_support" |
|---|
| 1499 | align_family_slv "DQ060321.1:0.66 L07510.1:0.64 D43628.230:0.61 AB372515.1:0.61 FN594944.1:0.61 AB206954.1:0.61 AB519798.1:0.6 EU887283.1:0.6 AF095272.1:0.6 GQ282624.1:0.6 KC782839.1:0.59 AF262035.1:0.59 AY186542.1:0.59 AB371073.1:0.59 AM039978.1:0.58 AM269467.1:0.58 " |
|---|
| 1500 | align_filter_slv "" |
|---|
| 1501 | align_log_slv "shifting bases to fit in 1 bases at pos 42600 to 42600;total inserted bases=7;longest insertion=2;total inserted bases before shifting=1;scoring: raw=-3375.44, weight=-3681.5, query-len=1512, aligned-bases=1512, score=0.916865; " |
|---|
| 1502 | align_startpos_slv %i 1004 |
|---|
| 1503 | align_stoppos_slv %i 43278 |
|---|
| 1504 | nuc %i 1512 |
|---|
| 1505 | turn_slv "none" |
|---|
| 1506 | ARB_treetax "Archaea/Euryarchaeota" |
|---|
| 1507 | %) /*species*/ |
|---|
| 1508 | |
|---|
| 1509 | %) /*species_data*/ |
|---|
| 1510 | |
|---|
| 1511 | presets %% (% |
|---|
| 1512 | alignment %% (% |
|---|
| 1513 | alignment_name "ali_16s" |
|---|
| 1514 | alignment_len %i 1482 |
|---|
| 1515 | aligned %i 1 |
|---|
| 1516 | alignment_write_security %i 0 |
|---|
| 1517 | alignment_type "rna" |
|---|
| 1518 | alignment_rem "" |
|---|
| 1519 | auto_format %i 1 |
|---|
| 1520 | %) /*alignment*/ |
|---|
| 1521 | |
|---|
| 1522 | use "ali_16s" |
|---|
| 1523 | key_data %% (% |
|---|
| 1524 | key %% (% |
|---|
| 1525 | key_name "name" |
|---|
| 1526 | key_type %i 12 |
|---|
| 1527 | %) /*key*/ |
|---|
| 1528 | |
|---|
| 1529 | key %% (% |
|---|
| 1530 | key_name "acc" |
|---|
| 1531 | key_type %i 12 |
|---|
| 1532 | %) /*key*/ |
|---|
| 1533 | |
|---|
| 1534 | key %% (% |
|---|
| 1535 | key_name "full_name" |
|---|
| 1536 | key_type %i 12 |
|---|
| 1537 | %) /*key*/ |
|---|
| 1538 | |
|---|
| 1539 | key %% (% |
|---|
| 1540 | key_name "tmp" |
|---|
| 1541 | key_type %i 12 |
|---|
| 1542 | %) /*key*/ |
|---|
| 1543 | |
|---|
| 1544 | key %% (% |
|---|
| 1545 | key_name "ARB_color" |
|---|
| 1546 | key_type %i 3 |
|---|
| 1547 | %) /*key*/ |
|---|
| 1548 | |
|---|
| 1549 | key %% (% |
|---|
| 1550 | key_name "ARB_treetax" |
|---|
| 1551 | key_type %i 12 |
|---|
| 1552 | %) /*key*/ |
|---|
| 1553 | |
|---|
| 1554 | key %% (% |
|---|
| 1555 | key_name "NJ_support_pk4_ltp" |
|---|
| 1556 | key_type %i 12 |
|---|
| 1557 | %) /*key*/ |
|---|
| 1558 | |
|---|
| 1559 | key %% (% |
|---|
| 1560 | key_name "ali_16s" |
|---|
| 1561 | key_type %i 15 |
|---|
| 1562 | %) /*key*/ |
|---|
| 1563 | |
|---|
| 1564 | key %% (% |
|---|
| 1565 | key_name "ali_16s/data" |
|---|
| 1566 | key_type %i 12 |
|---|
| 1567 | %) /*key*/ |
|---|
| 1568 | |
|---|
| 1569 | key %% (% |
|---|
| 1570 | key_name "align_bp_score_slv" |
|---|
| 1571 | key_type %i 3 |
|---|
| 1572 | %) /*key*/ |
|---|
| 1573 | |
|---|
| 1574 | key %% (% |
|---|
| 1575 | key_name "align_cutoff_head_slv" |
|---|
| 1576 | key_type %i 3 |
|---|
| 1577 | %) /*key*/ |
|---|
| 1578 | |
|---|
| 1579 | key %% (% |
|---|
| 1580 | key_name "align_cutoff_tail_slv" |
|---|
| 1581 | key_type %i 3 |
|---|
| 1582 | %) /*key*/ |
|---|
| 1583 | |
|---|
| 1584 | key %% (% |
|---|
| 1585 | key_name "align_family_slv" |
|---|
| 1586 | key_type %i 12 |
|---|
| 1587 | %) /*key*/ |
|---|
| 1588 | |
|---|
| 1589 | key %% (% |
|---|
| 1590 | key_name "align_filter_slv" |
|---|
| 1591 | key_type %i 12 |
|---|
| 1592 | %) /*key*/ |
|---|
| 1593 | |
|---|
| 1594 | key %% (% |
|---|
| 1595 | key_name "align_ident_slv" |
|---|
| 1596 | key_type %i 4 |
|---|
| 1597 | %) /*key*/ |
|---|
| 1598 | |
|---|
| 1599 | key %% (% |
|---|
| 1600 | key_name "align_log_slv" |
|---|
| 1601 | key_type %i 12 |
|---|
| 1602 | %) /*key*/ |
|---|
| 1603 | |
|---|
| 1604 | key %% (% |
|---|
| 1605 | key_name "align_quality_slv" |
|---|
| 1606 | key_type %i 3 |
|---|
| 1607 | %) /*key*/ |
|---|
| 1608 | |
|---|
| 1609 | key %% (% |
|---|
| 1610 | key_name "align_startpos_slv" |
|---|
| 1611 | key_type %i 3 |
|---|
| 1612 | %) /*key*/ |
|---|
| 1613 | |
|---|
| 1614 | key %% (% |
|---|
| 1615 | key_name "align_stoppos_slv" |
|---|
| 1616 | key_type %i 3 |
|---|
| 1617 | %) /*key*/ |
|---|
| 1618 | |
|---|
| 1619 | key %% (% |
|---|
| 1620 | key_name "aligned_slv" |
|---|
| 1621 | key_type %i 12 |
|---|
| 1622 | %) /*key*/ |
|---|
| 1623 | |
|---|
| 1624 | key %% (% |
|---|
| 1625 | key_name "ambig_slv" |
|---|
| 1626 | key_type %i 4 |
|---|
| 1627 | %) /*key*/ |
|---|
| 1628 | |
|---|
| 1629 | key %% (% |
|---|
| 1630 | key_name "ann_src_slv" |
|---|
| 1631 | key_type %i 12 |
|---|
| 1632 | %) /*key*/ |
|---|
| 1633 | |
|---|
| 1634 | key %% (% |
|---|
| 1635 | key_name "author" |
|---|
| 1636 | key_type %i 12 |
|---|
| 1637 | %) /*key*/ |
|---|
| 1638 | |
|---|
| 1639 | key %% (% |
|---|
| 1640 | key_name "collected_by" |
|---|
| 1641 | key_type %i 12 |
|---|
| 1642 | %) /*key*/ |
|---|
| 1643 | |
|---|
| 1644 | key %% (% |
|---|
| 1645 | key_name "collection_date" |
|---|
| 1646 | key_type %i 12 |
|---|
| 1647 | %) /*key*/ |
|---|
| 1648 | |
|---|
| 1649 | key %% (% |
|---|
| 1650 | key_name "country" |
|---|
| 1651 | key_type %i 12 |
|---|
| 1652 | %) /*key*/ |
|---|
| 1653 | |
|---|
| 1654 | key %% (% |
|---|
| 1655 | key_name "culture_collection" |
|---|
| 1656 | key_type %i 12 |
|---|
| 1657 | %) /*key*/ |
|---|
| 1658 | |
|---|
| 1659 | key %% (% |
|---|
| 1660 | key_name "date" |
|---|
| 1661 | key_type %i 12 |
|---|
| 1662 | %) /*key*/ |
|---|
| 1663 | |
|---|
| 1664 | key %% (% |
|---|
| 1665 | key_name "description" |
|---|
| 1666 | key_type %i 12 |
|---|
| 1667 | %) /*key*/ |
|---|
| 1668 | |
|---|
| 1669 | key %% (% |
|---|
| 1670 | key_name "embl_class" |
|---|
| 1671 | key_type %i 12 |
|---|
| 1672 | %) /*key*/ |
|---|
| 1673 | |
|---|
| 1674 | key %% (% |
|---|
| 1675 | key_name "embl_division" |
|---|
| 1676 | key_type %i 12 |
|---|
| 1677 | %) /*key*/ |
|---|
| 1678 | |
|---|
| 1679 | key %% (% |
|---|
| 1680 | key_name "fullname_ltp" |
|---|
| 1681 | key_type %i 12 |
|---|
| 1682 | %) /*key*/ |
|---|
| 1683 | |
|---|
| 1684 | key %% (% |
|---|
| 1685 | key_name "gene" |
|---|
| 1686 | key_type %i 12 |
|---|
| 1687 | %) /*key*/ |
|---|
| 1688 | |
|---|
| 1689 | key %% (% |
|---|
| 1690 | key_name "habitat_slv" |
|---|
| 1691 | key_type %i 12 |
|---|
| 1692 | %) /*key*/ |
|---|
| 1693 | |
|---|
| 1694 | key %% (% |
|---|
| 1695 | key_name "hi_tax_ltp" |
|---|
| 1696 | key_type %i 12 |
|---|
| 1697 | %) /*key*/ |
|---|
| 1698 | |
|---|
| 1699 | key %% (% |
|---|
| 1700 | key_name "homop_events_slv" |
|---|
| 1701 | key_type %i 3 |
|---|
| 1702 | %) /*key*/ |
|---|
| 1703 | |
|---|
| 1704 | key %% (% |
|---|
| 1705 | key_name "homop_slv" |
|---|
| 1706 | key_type %i 4 |
|---|
| 1707 | %) /*key*/ |
|---|
| 1708 | |
|---|
| 1709 | key %% (% |
|---|
| 1710 | key_name "host" |
|---|
| 1711 | key_type %i 12 |
|---|
| 1712 | %) /*key*/ |
|---|
| 1713 | |
|---|
| 1714 | key %% (% |
|---|
| 1715 | key_name "identified_by" |
|---|
| 1716 | key_type %i 12 |
|---|
| 1717 | %) /*key*/ |
|---|
| 1718 | |
|---|
| 1719 | key %% (% |
|---|
| 1720 | key_name "insdc" |
|---|
| 1721 | key_type %i 3 |
|---|
| 1722 | %) /*key*/ |
|---|
| 1723 | |
|---|
| 1724 | key %% (% |
|---|
| 1725 | key_name "isolate" |
|---|
| 1726 | key_type %i 12 |
|---|
| 1727 | %) /*key*/ |
|---|
| 1728 | |
|---|
| 1729 | key %% (% |
|---|
| 1730 | key_name "isolation_source" |
|---|
| 1731 | key_type %i 12 |
|---|
| 1732 | %) /*key*/ |
|---|
| 1733 | |
|---|
| 1734 | key %% (% |
|---|
| 1735 | key_name "journal" |
|---|
| 1736 | key_type %i 12 |
|---|
| 1737 | %) /*key*/ |
|---|
| 1738 | |
|---|
| 1739 | key %% (% |
|---|
| 1740 | key_name "lat_lon" |
|---|
| 1741 | key_type %i 12 |
|---|
| 1742 | %) /*key*/ |
|---|
| 1743 | |
|---|
| 1744 | key %% (% |
|---|
| 1745 | key_name "nuc" |
|---|
| 1746 | key_type %i 3 |
|---|
| 1747 | %) /*key*/ |
|---|
| 1748 | |
|---|
| 1749 | key %% (% |
|---|
| 1750 | key_name "nuc_gene_slv" |
|---|
| 1751 | key_type %i 3 |
|---|
| 1752 | %) /*key*/ |
|---|
| 1753 | |
|---|
| 1754 | key %% (% |
|---|
| 1755 | key_name "nuc_region" |
|---|
| 1756 | key_type %i 12 |
|---|
| 1757 | %) /*key*/ |
|---|
| 1758 | |
|---|
| 1759 | key %% (% |
|---|
| 1760 | key_name "nuc_rp" |
|---|
| 1761 | key_type %i 12 |
|---|
| 1762 | %) /*key*/ |
|---|
| 1763 | |
|---|
| 1764 | key %% (% |
|---|
| 1765 | key_name "pcr_primers" |
|---|
| 1766 | key_type %i 12 |
|---|
| 1767 | %) /*key*/ |
|---|
| 1768 | |
|---|
| 1769 | key %% (% |
|---|
| 1770 | key_name "phyl_ltp" |
|---|
| 1771 | key_type %i 12 |
|---|
| 1772 | %) /*key*/ |
|---|
| 1773 | |
|---|
| 1774 | key %% (% |
|---|
| 1775 | key_name "pintail_slv" |
|---|
| 1776 | key_type %i 3 |
|---|
| 1777 | %) /*key*/ |
|---|
| 1778 | |
|---|
| 1779 | key %% (% |
|---|
| 1780 | key_name "publication_doi" |
|---|
| 1781 | key_type %i 12 |
|---|
| 1782 | %) /*key*/ |
|---|
| 1783 | |
|---|
| 1784 | key %% (% |
|---|
| 1785 | key_name "pubmed_id" |
|---|
| 1786 | key_type %i 12 |
|---|
| 1787 | %) /*key*/ |
|---|
| 1788 | |
|---|
| 1789 | key %% (% |
|---|
| 1790 | key_name "rel_ltp" |
|---|
| 1791 | key_type %i 12 |
|---|
| 1792 | %) /*key*/ |
|---|
| 1793 | |
|---|
| 1794 | key %% (% |
|---|
| 1795 | key_name "riskgroup_ltp" |
|---|
| 1796 | key_type %i 12 |
|---|
| 1797 | %) /*key*/ |
|---|
| 1798 | |
|---|
| 1799 | key %% (% |
|---|
| 1800 | key_name "seq_quality_slv" |
|---|
| 1801 | key_type %i 3 |
|---|
| 1802 | %) /*key*/ |
|---|
| 1803 | |
|---|
| 1804 | key %% (% |
|---|
| 1805 | key_name "start" |
|---|
| 1806 | key_type %i 3 |
|---|
| 1807 | %) /*key*/ |
|---|
| 1808 | |
|---|
| 1809 | key %% (% |
|---|
| 1810 | key_name "stop" |
|---|
| 1811 | key_type %i 3 |
|---|
| 1812 | %) /*key*/ |
|---|
| 1813 | |
|---|
| 1814 | key %% (% |
|---|
| 1815 | key_name "strain" |
|---|
| 1816 | key_type %i 12 |
|---|
| 1817 | %) /*key*/ |
|---|
| 1818 | |
|---|
| 1819 | key %% (% |
|---|
| 1820 | key_name "sub_species" |
|---|
| 1821 | key_type %i 12 |
|---|
| 1822 | %) /*key*/ |
|---|
| 1823 | |
|---|
| 1824 | key %% (% |
|---|
| 1825 | key_name "submit_author" |
|---|
| 1826 | key_type %i 12 |
|---|
| 1827 | %) /*key*/ |
|---|
| 1828 | |
|---|
| 1829 | key %% (% |
|---|
| 1830 | key_name "submit_date" |
|---|
| 1831 | key_type %i 12 |
|---|
| 1832 | %) /*key*/ |
|---|
| 1833 | |
|---|
| 1834 | key %% (% |
|---|
| 1835 | key_name "tax_embl" |
|---|
| 1836 | key_type %i 12 |
|---|
| 1837 | %) /*key*/ |
|---|
| 1838 | |
|---|
| 1839 | key %% (% |
|---|
| 1840 | key_name "tax_embl_name" |
|---|
| 1841 | key_type %i 12 |
|---|
| 1842 | %) /*key*/ |
|---|
| 1843 | |
|---|
| 1844 | key %% (% |
|---|
| 1845 | key_name "tax_greengenes" |
|---|
| 1846 | key_type %i 12 |
|---|
| 1847 | %) /*key*/ |
|---|
| 1848 | |
|---|
| 1849 | key %% (% |
|---|
| 1850 | key_name "tax_greengenes_name" |
|---|
| 1851 | key_type %i 12 |
|---|
| 1852 | %) /*key*/ |
|---|
| 1853 | |
|---|
| 1854 | key %% (% |
|---|
| 1855 | key_name "tax_ltp" |
|---|
| 1856 | key_type %i 12 |
|---|
| 1857 | %) /*key*/ |
|---|
| 1858 | |
|---|
| 1859 | key %% (% |
|---|
| 1860 | key_name "tax_ltp_name" |
|---|
| 1861 | key_type %i 12 |
|---|
| 1862 | %) /*key*/ |
|---|
| 1863 | |
|---|
| 1864 | key %% (% |
|---|
| 1865 | key_name "tax_rdp" |
|---|
| 1866 | key_type %i 12 |
|---|
| 1867 | %) /*key*/ |
|---|
| 1868 | |
|---|
| 1869 | key %% (% |
|---|
| 1870 | key_name "tax_rdp_name" |
|---|
| 1871 | key_type %i 12 |
|---|
| 1872 | %) /*key*/ |
|---|
| 1873 | |
|---|
| 1874 | key %% (% |
|---|
| 1875 | key_name "tax_slv" |
|---|
| 1876 | key_type %i 12 |
|---|
| 1877 | %) /*key*/ |
|---|
| 1878 | |
|---|
| 1879 | key %% (% |
|---|
| 1880 | key_name "tax_xref_embl" |
|---|
| 1881 | key_type %i 12 |
|---|
| 1882 | %) /*key*/ |
|---|
| 1883 | |
|---|
| 1884 | key %% (% |
|---|
| 1885 | key_name "title" |
|---|
| 1886 | key_type %i 12 |
|---|
| 1887 | %) /*key*/ |
|---|
| 1888 | |
|---|
| 1889 | key %% (% |
|---|
| 1890 | key_name "turn_slv" |
|---|
| 1891 | key_type %i 12 |
|---|
| 1892 | %) /*key*/ |
|---|
| 1893 | |
|---|
| 1894 | key %% (% |
|---|
| 1895 | key_name "type_ltp" |
|---|
| 1896 | key_type %i 12 |
|---|
| 1897 | %) /*key*/ |
|---|
| 1898 | |
|---|
| 1899 | key %% (% |
|---|
| 1900 | key_name "url_lpsn_ltp" |
|---|
| 1901 | key_type %i 12 |
|---|
| 1902 | %) /*key*/ |
|---|
| 1903 | |
|---|
| 1904 | key %% (% |
|---|
| 1905 | key_name "vector_slv" |
|---|
| 1906 | key_type %i 4 |
|---|
| 1907 | %) /*key*/ |
|---|
| 1908 | |
|---|
| 1909 | key %% (% |
|---|
| 1910 | key_name "version" |
|---|
| 1911 | key_type %i 3 |
|---|
| 1912 | %) /*key*/ |
|---|
| 1913 | |
|---|
| 1914 | %) /*key_data*/ |
|---|
| 1915 | |
|---|
| 1916 | %) /*presets*/ |
|---|
| 1917 | |
|---|
| 1918 | description "- excerpt of LTP132_SSU\n- used for testing field data\n- gaps removed from sequence data\n" |
|---|
| 1919 | extended_data :7000 %% (% |
|---|
| 1920 | extended %% (% |
|---|
| 1921 | name :7000 "ECOLI" |
|---|
| 1922 | errors %i 0 |
|---|
| 1923 | acc "J01695" |
|---|
| 1924 | full_name "Escherichia coli" |
|---|
| 1925 | ali_16s %% (% |
|---|
| 1926 | data "AUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGG-CCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUA" |
|---|
| 1927 | %) /*ali_16s*/ |
|---|
| 1928 | |
|---|
| 1929 | aligned "12dec94" |
|---|
| 1930 | showsec %i 0 |
|---|
| 1931 | %) /*extended*/ |
|---|
| 1932 | |
|---|
| 1933 | extended %% (% |
|---|
| 1934 | name :7000 "HELIX" |
|---|
| 1935 | ali_16s %% (% |
|---|
| 1936 | data "<[]>>>].[<<<.<<<<<[.[<<<<<<[[....[<<.<<[..[<<..<<<<<..<<<<<<<<<<....>>>>>>>.>>>>>.>>>>>]......[<[......[<<<<<<<.<<...<<<<<<[.[<<<<<<..<<[[<<....>>]]>>...>>>>>>].....<<<....>>>....[<<<<<..<<....>>>>>>>].]>>>>>>..>>>>>>>>>][<<<<<<<<<..<<<<<<<[.......]>>>>>>>>>>>..>>>>>]..[<<<<<<[....]>>>...>>>]]>].[<<<<<[........]>>>>>].[<<[....]>>]...]>>>>].].....[.<<<...<<<<[....]>>>>.>>>].]>.>>>>>]..[<<<<..<<<<<<[....]>>>>>>>.>>>].[<<.<.<<<<<<<<<.<<<<<<<<<.......>>>>>>>>>>>..>.>>>>>>>>..>]...[<<<[[<[...[<<<<[[...[[.]>]]].....]]>>>>]]>>>].]>>>>>>>>].......[<<<<[[[....[<<<<.<<<<<[[<<<<<<.<<<<<<<<<<<.....<<<<<<.....>>>>>>...>>>>>>>>..>>>>>>>>>]...[<<<<<<<<.<<<<<<<[[<.<<<<<<<<<...<<[......]>>......>>>>>>>>>.>]....[..<[....]>]]>>>>>>>>>>>.>>>>]..]>>>>>.>>>>]...[<<<<<<...<...<<<[.........]>>>...>>>>>>>]..........[<<<<<[.[<<<<<<<<<<<.....>>>>>>>>>>>]...[[..]]]]....]>>>>>].]>>>>].[<<[..[<<[....]>>]...]>>]..]>>]..[<<<<.<<<<<<[....[<<<<[.[<<<<<<<<<[....[<<[........]>>]........[<<<<<[......[<<<<<[..[<<<<<[....]>>>>>].[<<<....>>>]]>>>>.>].[<<.<<<..<<<<<<<.<<<<[[<<<<[[<[....]>]..[<<[......]>>]..]>>>>].....[<<<[[<<<<<<.<<<[..<<<<...>.>>>]>>>..>>>>>>].....[<<<<.....>>>>].......]>>>].]>>>>.>.>>>...>>>>>>>>]...]>>>>>]...]>.>>>>>>>>]....[<<<<<<.....<<[.[<<<<<<<[....]>>>>>>>]...]>>.....>>>>>>]......[<<<<<<<<<<<........>>>>>>>>>>>].....]>>>>]....[<<<<<<[.......]>>>>>>]...........]>>>>>>>>>.>]....[<.<<<<.<<<<<<<<<<<<<<<<<<<<<<....<<<<<<.<<<<..<<....>>.>>>>>>>>>>...>>>>>>>>>>>>>>>>>>>>>>..>>>>.." |
|---|
| 1937 | _STRUCT "MAX_INDEX=860631\nROOT_ANGLE=1.32184\nLOOP={\n\tRADIUS=0:0\n\tSEGMENT={\n\t\tSEQ=268:0\n\t}\n\tSTRAND={\n\t\tSEQ=0:1\n\t\tDELTA=3.85806\n\t\tDELTA_IN=0.716469\n\t\tLENGTH=21.9537:0\n\t\tLOOP={\n\t\t\tRADIUS=0:0\n\t\t\tSEGMENT={\n\t\t\t\tSEQ=1:2\n\t\t\t}\n\t\t\tSTRAND={\n\t\t\t\tSEQ=2:3\n\t\t\t\tDELTA=3.11962\n\t\t\t\tDELTA_IN=6.26121\n\t\t\t\tLENGTH=0:0\n\t\t\t\tLOOP={\n\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=3:4\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=4:5\n\t\t\t\t\t\tDELTA=1.87164\n\t\t\t\t\t\tDELTA_IN=5.01323\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=5:6\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=6:7\n\t\t\t\t\t\t\t\tDELTA=1.37457\n\t\t\t\t\t\t\t\tDELTA_IN=4.51616\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=7:8\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=8:9\n\t\t\t\t\t\t\t\t\t\tDELTA=5.84016\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=2.69857\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=9:10\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=10:11\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=11:12\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=12:13\n\t\t\t\t\t\t\t\t\t\tDELTA=1.47018\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=4.61177\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=13:14\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=14:15\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA=1.00975\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=4.15134\n\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=15:16\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=16:17\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=5.61351\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=2.47192\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=17:18\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=18:19\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=19:20\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=20:21\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=1.03018\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=4.17177\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=21:22\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=22:23\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=23:24\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=24:25\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=1.98164\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=5.12324\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=25:26\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=26:27\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=27:28\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=28:29\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=2.74563\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=5.88722\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=29:30\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=30:31\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=31:32\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=32:33\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=33:33\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=34:35\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA=2.27847\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=5.42006\n\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=35:36\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=36:37\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=37:38\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=38:39\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA=2.78543\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=5.92702\n\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=39:40\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=40:41\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=41:41\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=41:42\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=42:43\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=43:44\n\t\t\t\t\t\t\t\t\t\tDELTA=2.85945\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=6.00104\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=44:45\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=45:46\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=46:47\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=47:48\n\t\t\t\t\t\t\t\t\t\tDELTA=3.36462\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=0.223031\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=48:49\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=49:50\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=50:51\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=51:52\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=52:53\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=53:54\n\t\t\t\t\t\t\t\tDELTA=3.12355\n\t\t\t\t\t\t\t\tDELTA_IN=6.26515\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=54:55\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=55:56\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=56:57\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=57:58\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=58:59\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=59:60\n\t\t\t\t\t\tDELTA=2.96152\n\t\t\t\t\t\tDELTA_IN=6.10311\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=60:61\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=61:62\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=62:63\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=63:64\n\t\t\t\t\t\tDELTA=3.56632\n\t\t\t\t\t\tDELTA_IN=0.424731\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=64:65\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=65:66\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=66:67\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=67:68\n\t\t\t\t\t\tDELTA=4.64894\n\t\t\t\t\t\tDELTA_IN=1.50735\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=68:69\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=69:70\n\t\t\t\t\t\t\t\tDELTA=5.5282\n\t\t\t\t\t\t\t\tDELTA_IN=2.38661\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=70:71\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=71:72\n\t\t\t\t\t\t\t\t\t\tDELTA=4.59215\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=1.45056\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=72:73\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=73:74\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=74:75\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=75:76\n\t\t\t\t\t\t\t\t\t\tDELTA=5.05178\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=1.91019\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=76:77\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=77:78\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=78:79\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=79:80\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=80:80\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=81:82\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=82:83\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tSEQ=83:84\n\t\t\t}\n\t\t\tSEGMENT={\n\t\t\t\tSEQ=84:85\n\t\t\t}\n\t\t\tSTRAND={\n\t\t\t\tSEQ=85:86\n\t\t\t\tDELTA=5.17909\n\t\t\t\tDELTA_IN=2.0375\n\t\t\t\tLENGTH=6.9046:0\n\t\t\t\tLOOP={\n\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=86:87\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=87:88\n\t\t\t\t\t\tDELTA=4.21001\n\t\t\t\t\t\tDELTA_IN=1.06842\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=88:89\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=89:90\n\t\t\t\t\t\t\t\tDELTA=3.00567\n\t\t\t\t\t\t\t\tDELTA_IN=6.14726\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=90:91\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=91:92\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=92:93\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=93:94\n\t\t\t\t\t\t\t\tDELTA=3.07532\n\t\t\t\t\t\t\t\tDELTA_IN=6.21692\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=94:95\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=95:96\n\t\t\t\t\t\t\t\t\t\tDELTA=2.71537\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=5.85696\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=96:97\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=97:98\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=98:99\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=99:100\n\t\t\t\t\t\t\t\t\t\tDELTA=3.86621\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=0.724619\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=100:101\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=101:102\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=102:103\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=103:104\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=104:105\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=105:106\n\t\t\t\t\t\t\t\tDELTA=3.50113\n\t\t\t\t\t\t\t\tDELTA_IN=0.359541\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=106:107\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=107:108\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=108:108\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=108:109\n\t\t\t\t\t\t\t\tDELTA=4.21116\n\t\t\t\t\t\t\t\tDELTA_IN=1.06957\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=109:110\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=110:111\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=111:111\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=112:113\n\t\t\t\t\t\t\t\tDELTA=4.67032\n\t\t\t\t\t\t\t\tDELTA_IN=1.52873\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=113:114\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=114:115\n\t\t\t\t\t\t\t\t\t\tDELTA=4.0846\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=0.943011\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=115:116\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=116:117\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=117:118\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=118:119\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=119:120\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=120:121\n\t\t\t\t\t\t\t\tDELTA=5.97211\n\t\t\t\t\t\t\t\tDELTA_IN=2.83052\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=121:122\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=122:123\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=123:124\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=124:125\n\t\t\t\t\t\t\t\tDELTA=6.08765\n\t\t\t\t\t\t\t\tDELTA_IN=2.94606\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=125:126\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=126:127\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=127:128\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=128:129\n\t\t\t\t\t\t\t\tDELTA=5.50923\n\t\t\t\t\t\t\t\tDELTA_IN=2.36763\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=129:130\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=130:131\n\t\t\t\t\t\t\t\t\t\tDELTA=4.04711\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=0.905518\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=131:132\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=132:133\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=133:134\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=134:135\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=135:136\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=136:137\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=137:138\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=138:139\n\t\t\t\t\t\tDELTA=5.22662\n\t\t\t\t\t\tDELTA_IN=2.08503\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=139:140\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=140:141\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=141:142\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=142:143\n\t\t\t\t\t\tDELTA=0.321373\n\t\t\t\t\t\tDELTA_IN=3.46297\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=143:144\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=144:145\n\t\t\t\t\t\t\t\tDELTA=5.11046\n\t\t\t\t\t\t\t\tDELTA_IN=1.96887\n\t\t\t\t\t\t\t\tLENGTH=5.02281:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=145:146\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=146:147\n\t\t\t\t\t\t\t\t\t\tDELTA=0.922877\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=4.06447\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=147:148\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=148:149\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=149:150\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=150:151\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=151:152\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=152:153\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=153:154\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tSEQ=154:155\n\t\t\t}\n\t\t\tSEGMENT={\n\t\t\t\tSEQ=155:156\n\t\t\t}\n\t\t\tSTRAND={\n\t\t\t\tSEQ=156:157\n\t\t\t\tDELTA=0.289892\n\t\t\t\tDELTA_IN=3.43148\n\t\t\t\tLENGTH=0:0\n\t\t\t\tLOOP={\n\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=157:158\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=158:159\n\t\t\t\t\t\tDELTA=0.183011\n\t\t\t\t\t\tDELTA_IN=3.3246\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=159:160\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=160:161\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=161:162\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tSEQ=162:163\n\t\t\t}\n\t\t\tSEGMENT={\n\t\t\t\tSEQ=163:164\n\t\t\t}\n\t\t}\n\t\tSEQ=164:165\n\t}\n\tSEGMENT={\n\t\tSEQ=165:166\n\t}\n\tSTRAND={\n\t\tSEQ=166:167\n\t\tDELTA=5.84897\n\t\tDELTA_IN=2.70738\n\t\tLENGTH=33.8175:0\n\t\tLOOP={\n\t\t\tRADIUS=0:0\n\t\t\tSEGMENT={\n\t\t\t\tSEQ=167:168\n\t\t\t}\n\t\t\tSTRAND={\n\t\t\t\tSEQ=168:169\n\t\t\t\tDELTA=4.75282\n\t\t\t\tDELTA_IN=1.61123\n\t\t\t\tLENGTH=0:0\n\t\t\t\tLOOP={\n\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=169:170\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=170:171\n\t\t\t\t\t\tDELTA=2.95937\n\t\t\t\t\t\tDELTA_IN=6.10097\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=171:172\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=172:173\n\t\t\t\t\t\t\t\tDELTA=1.17361\n\t\t\t\t\t\t\t\tDELTA_IN=4.3152\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=173:174\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=174:175\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=175:176\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=176:177\n\t\t\t\t\t\t\t\tDELTA=4.64996\n\t\t\t\t\t\t\t\tDELTA_IN=1.50837\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=177:178\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=178:179\n\t\t\t\t\t\t\t\t\t\tDELTA=4.4254\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=1.28381\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=179:180\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=180:181\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA=3.39621\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=0.254614\n\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=181:182\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=182:183\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=183:184\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=184:185\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA=5.29905\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=2.15746\n\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=185:186\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=186:187\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=187:188\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=188:189\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=189:190\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\tSEQ=190:191\n\t\t\t\t\t\t\t\t\t\tDELTA=5.29306\n\t\t\t\t\t\t\t\t\t\tDELTA_IN=2.15147\n\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=191:191\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=192:193\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA=3.66954\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=0.52795\n\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=193:193\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=193:194\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=2.26633\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=5.40792\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=194:195\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=195:196\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=196:197\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=197:198\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=4.33953\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=1.19794\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=198:199\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=199:200\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=200:201\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=201:202\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=202:203\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=203:204\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA=5.7802\n\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=2.63861\n\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=3.32394:0\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=204:205\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=205:206\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=4.18896\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=1.04736\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=206:206\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=207:208\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=4.21721\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=1.07561\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=208:209\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=209:210\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=3.06783\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=6.20943\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=210:211\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=211:212\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=212:213\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=213:214\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=6.01184\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=2.87025\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=214:215\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=215:216\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=216:217\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=217:218\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=218:219\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=219:220\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=4.97519\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=1.83359\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=220:221\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=221:222\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=222:223\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=223:224\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=224:225\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=225:226\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA=5.98323\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tDELTA_IN=2.84164\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=226:227\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=227:228\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\t\t\tSEQ=228:229\n\t\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=229:230\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\t\t\tSEQ=230:231\n\t\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\t\tSEQ=231:232\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=232:233\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=233:234\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=234:235\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=235:236\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=236:237\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=237:238\n\t\t\t\t\t\tDELTA=4.99139\n\t\t\t\t\t\tDELTA_IN=1.8498\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=238:239\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=239:240\n\t\t\t\t\t\t\t\tDELTA=3.80534\n\t\t\t\t\t\t\t\tDELTA_IN=0.663751\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=240:241\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=241:242\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=242:243\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSTRAND={\n\t\t\t\t\t\t\t\tSEQ=243:244\n\t\t\t\t\t\t\t\tDELTA=5.34933\n\t\t\t\t\t\t\t\tDELTA_IN=2.20774\n\t\t\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\t\t\tSEQ=244:245\n\t\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\t\tSEQ=245:246\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=246:247\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=247:248\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=248:249\n\t\t\t\t\t}\n\t\t\t\t\tSTRAND={\n\t\t\t\t\t\tSEQ=249:250\n\t\t\t\t\t\tDELTA=6.20908\n\t\t\t\t\t\tDELTA_IN=3.06749\n\t\t\t\t\t\tLENGTH=0:0\n\t\t\t\t\t\tLOOP={\n\t\t\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\t\t\tSEQ=250:251\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t\tSEQ=251:252\n\t\t\t\t\t}\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=252:253\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tSEQ=253:254\n\t\t\t}\n\t\t\tSEGMENT={\n\t\t\t\tSEQ=254:255\n\t\t\t}\n\t\t\tSTRAND={\n\t\t\t\tSEQ=255:256\n\t\t\t\tDELTA=0.160304\n\t\t\t\tDELTA_IN=3.3019\n\t\t\t\tLENGTH=0:0\n\t\t\t\tLOOP={\n\t\t\t\t\tRADIUS=0:0\n\t\t\t\t\tSEGMENT={\n\t\t\t\t\t\tSEQ=256:257\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tSEQ=257:258\n\t\t\t}\n\t\t\tSEGMENT={\n\t\t\t\tSEQ=258:259\n\t\t\t}\n\t\t}\n\t\tSEQ=259:260\n\t}\n\tSEGMENT={\n\t\tSEQ=260:261\n\t}\n\tSTRAND={\n\t\tSEQ=261:262\n\t\tDELTA=0.309839\n\t\tDELTA_IN=3.45143\n\t\tLENGTH=30.2739:0\n\t\tLOOP={\n\t\t\tRADIUS=0:0\n\t\t\tSEGMENT={\n\t\t\t\tSEQ=262:263\n\t\t\t}\n\t\t}\n\t\tSEQ=263:264\n\t}\n\tSEGMENT={\n\t\tSEQ=264:265\n\t}\n\tSTRAND={\n\t\tSEQ=265:266\n\t\tDELTA=0.682731\n\t\tDELTA_IN=3.82432\n\t\tLENGTH=0:0\n\t\tLOOP={\n\t\t\tRADIUS=0:0\n\t\t\tSEGMENT={\n\t\t\t\tSEQ=266:267\n\t\t\t}\n\t\t}\n\t\tSEQ=267:268\n\t}\n}\n" |
|---|
| 1938 | _REF "........x...........x............x........x...................................................x..x.....x.....................x.....................................................x......................x..................x..........................x.....................x...........x..........x...x..............x......xx.......x......x............x................x..........x........x.x.................x............x............................................................x.x..........x.........x.....x.......x.....x....xx.........x......x...........x...........x..................................................................x.................x.......................x....................................x...................x..............x..........................x..............x.........x.......x...........................................x......xx.....xx...x.x.......x......x.....x...x.x................x......x..............x...........x...x.......x............x........x..........x.......x...........x........x.....................x.....x......x..x.x.........x.....x..........x....x.........................x.................x.....................x.....x.........................x.........x...............x..............xx............x...........x....................x....................................x.....x...x..............x..................x............x...x.................................................................................................." |
|---|
| 1939 | %) /*ali_16s*/ |
|---|
| 1940 | |
|---|
| 1941 | showsec %i 0 |
|---|
| 1942 | %) /*extended*/ |
|---|
| 1943 | |
|---|
| 1944 | extended %% (% |
|---|
| 1945 | name :7000 "HELIX_NR" |
|---|
| 1946 | ali_16s %% (% |
|---|
| 1947 | data "..1.....3...........4.......1....5........6...................................................7........8.....................9..........929.....09.9...............................1......................8..................1..........................1.....................1...........1..........7...14.............1.......15......1......5......1.....16...............1..........4..........1.................1.............1.............................................................19...1.....2.....49..59.19.5......421....19....3........3.......2.....12....2...........2..................................................................2.................24......................24.......................2........2..2...................21.............2..........................2........................2.......2...............................2...1.2.....2.......20.....3.....10......1......30....2.....3................3......3..............3...........3...........35...........3........3..........3.......3...........36.......3.....................40....4......41...4.........42....4..........4....44..........4.............4.................45....................4.....39........................3.........3.........33....4...............26...........24..........46...................4....................................3.........48.............48.................31...............4.................................................................................................." |
|---|
| 1948 | %) /*ali_16s*/ |
|---|
| 1949 | |
|---|
| 1950 | showsec %i 0 |
|---|
| 1951 | %) /*extended*/ |
|---|
| 1952 | |
|---|
| 1953 | extended %$ (% |
|---|
| 1954 | name :7000 "CONSENSUS" |
|---|
| 1955 | ali_16s %% (% |
|---|
| 1956 | data "AUGGCUCAGAUUGAACGCUGGCGGUAUGCCUAACACAUGCAAGUCGAACGGCAGCAGGAAGUACCUCGCGACUUUGCCGACGAGCGGCGGACGGGUGAGUAAUGCAUAGGAAACUGCCCCAUAGAGGGGGAUAACGACGGGAAACGCACGCUAAUACCGCAUAACACCUACGGACCAAAGCGGGGGACCUUCGGGCCUCACACCAUCAGAUGAGCCCAGAUGGGAUUAGCUAGUAGGUAGGGUAAUGGCCCACCAAGGCGACGAUCCAUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUCCAGCAAUACCGCGUGUGUGAAGAAGGCCUGAGGGUUGUAAAGCACUUUCAACGAGAAGGAAGACCUAGCGGCGAAUACCACCAAGAACUGACAUUACCCACACAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUGAGUUAAGUCAGAUGUGAAAGCCCCGAGCUUAACCUGGGAACUGCAUUUGAAACUGGCAAACUAGAGUCGAGUAGAGGAGAGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGAAGGAACACCAGUGGCGAAGGCGGCCCCCUGGACAAAAACUGACGCUCAGGUACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCAACUAACAGGUGGGGCCCUAAAGAACUGACUGCCGGAGCUAACGCAUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACCCUUGACAUCCACAGAAUCUGCUAGAGAUAGCGGAGUGCCUUCGGGAACCCUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUAGUUGCCAACACGUCAGGCUGGGAACUCAAAGGAGACUGCCGGUGAUAAACCGGAGGAAGGUGGGGACGACGUCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGCAGAUACAAAGAGAAGCAAACUCGCGAGAGCAAGCAAACCCCAAAAAGCAGGUCCUAGUCCGGAUCGCAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGCAGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUA" |
|---|
| 1957 | _TYPE "CON: [species: marked] [number: 2] [count gaps: on] [threshold for gaps: 100] [simplify: off] [threshold for group: 30] [upper: 0] [lower: 0]" |
|---|
| 1958 | _SPECIES "SrrAquat MhyPalud " |
|---|
| 1959 | %) /*ali_16s*/ |
|---|
| 1960 | |
|---|
| 1961 | showsec %i 0 |
|---|
| 1962 | %) /*extended*/ |
|---|
| 1963 | |
|---|
| 1964 | %) /*extended_data*/ |
|---|
| 1965 | |
|---|
| 1966 | tree_data :7000 %% (% |
|---|
| 1967 | tree_LTPs132_SSU %% (% |
|---|
| 1968 | tree "N0.0099308,0.0099308;N0.112359,0.100396;N0.0379893,0.0480358;N0.0983123,0.0713396;N0.060164,0.175079;N0.00351545,0.193431;N0.0716409,0.0364879;N0.122872,0.0114286;LErwOleae\ALPurGergo\AN0.0232085,0.00712251;LYerKrist\ALSrrAquat\ALGlmApico\ALVibJapon\ALMhyPalud\AN0.11406,0.173659;N0.139683,0.292305;LBurCalid\ALStxAceti\ALXanCucur\AN0.191438,0.285707;LAgrSp148\ALPslBats2\AN0.0173909,0.0285647;N0.0109464,0.35726;N0.0101302,0.0154242;N0.0497341,0.0826764;N0.440396,0.250368;LMtpKand2\ALOcgTerie\AN0.18521,0.105086;LPesPropi\ALDstHafn2\AN0.0920159,0.267022;N0.213613,0.0363128;LClaMich8\ALAcsCell2\ALHrpAura2\ALCytHutc2\AN0.265779,0.221296;LTreIsopt\ALIlyPoly2\A" |
|---|
| 1969 | nnodes %i 21 |
|---|
| 1970 | remark "All-Species Living Tree. 16S rRNA. April 2018\n\ntree_LTPs132_SSU:\nNew sequences in this tree were added to the previous\nrelease (LTPs128) using ARB parsimony.\n\nLTP 30% maximum frequency filter was used.\n\nGroups are displayed accordingly to monophyletism and\nvalid taxonomic affiliations when possible. The\nphylogeny of each species is capitulated in the\nfield \"phyl_ltp\"." |
|---|
| 1971 | security %i 0 |
|---|
| 1972 | ruler %% (% |
|---|
| 1973 | size %f 0.01 |
|---|
| 1974 | LIST %% (% |
|---|
| 1975 | ruler_y %f 0 |
|---|
| 1976 | ruler_x %f 0 |
|---|
| 1977 | text_x %f 0 |
|---|
| 1978 | text_y %f -3.252698e-03 |
|---|
| 1979 | %) /*LIST*/ |
|---|
| 1980 | |
|---|
| 1981 | ruler_width %i 0 |
|---|
| 1982 | IRS %% (% |
|---|
| 1983 | ruler_y %f 0 |
|---|
| 1984 | ruler_x %f 0 |
|---|
| 1985 | text_x %f 0 |
|---|
| 1986 | text_y %f 0 |
|---|
| 1987 | %) /*IRS*/ |
|---|
| 1988 | |
|---|
| 1989 | %) /*ruler*/ |
|---|
| 1990 | |
|---|
| 1991 | node %% (% |
|---|
| 1992 | group_name "Firmicutes, Tenericutes, Negativicutes and Cyanobacteria" |
|---|
| 1993 | id %i 17 |
|---|
| 1994 | %) /*node*/ |
|---|
| 1995 | |
|---|
| 1996 | node %% (% |
|---|
| 1997 | group_name "Alpha, Beta and Gammaproteobacteria" |
|---|
| 1998 | id %i 1 |
|---|
| 1999 | %) /*node*/ |
|---|
| 2000 | |
|---|
| 2001 | order %i 3 |
|---|
| 2002 | node %% (% |
|---|
| 2003 | id %i 5 |
|---|
| 2004 | group_name "Enterobacterales, Pasteurellales and Orbales" |
|---|
| 2005 | %) /*node*/ |
|---|
| 2006 | |
|---|
| 2007 | node %% (% |
|---|
| 2008 | id %i 10 |
|---|
| 2009 | group_name "Betaproteobacteria" |
|---|
| 2010 | %) /*node*/ |
|---|
| 2011 | |
|---|
| 2012 | node %% (% |
|---|
| 2013 | id %i 2 |
|---|
| 2014 | group_name "Gammaproteobacteria and Betaproteobacteria" |
|---|
| 2015 | %) /*node*/ |
|---|
| 2016 | |
|---|
| 2017 | node %% (% |
|---|
| 2018 | id %i 11 |
|---|
| 2019 | group_name "Alphaproteobacteria" |
|---|
| 2020 | %) /*node*/ |
|---|
| 2021 | |
|---|
| 2022 | node %% (% |
|---|
| 2023 | id %i 19 |
|---|
| 2024 | group_name "Actinobacteria" |
|---|
| 2025 | %) /*node*/ |
|---|
| 2026 | |
|---|
| 2027 | node %% (% |
|---|
| 2028 | id %i 16 |
|---|
| 2029 | group_name "Bacteria" |
|---|
| 2030 | keeled %i 1 |
|---|
| 2031 | %) /*node*/ |
|---|
| 2032 | |
|---|
| 2033 | node %% (% |
|---|
| 2034 | id %i 8 |
|---|
| 2035 | group_name "Yersiniaceae, Hafniaceae and Budviciaceae" |
|---|
| 2036 | %) /*node*/ |
|---|
| 2037 | |
|---|
| 2038 | %) /*tree_LTPs132_SSU*/ |
|---|
| 2039 | |
|---|
| 2040 | %) /*tree_data*/ |
|---|
| 2041 | |
|---|
| 2042 | focus %% (% |
|---|
| 2043 | tree_name "tree_LTPs132_SSU" |
|---|
| 2044 | configuration "bergey" |
|---|
| 2045 | %) /*focus*/ |
|---|
| 2046 | |
|---|
| 2047 | nt %% (% |
|---|
| 2048 | gene_content "" |
|---|
| 2049 | target_string "" |
|---|
| 2050 | primer_target_string "" |
|---|
| 2051 | %) /*nt*/ |
|---|
| 2052 | |
|---|
| 2053 | sai_visualize %% (% |
|---|
| 2054 | %) /*sai_visualize*/ |
|---|
| 2055 | |
|---|
| 2056 | probe_collection %% (% |
|---|
| 2057 | match_weights %% (% |
|---|
| 2058 | %) /*match_weights*/ |
|---|
| 2059 | |
|---|
| 2060 | %) /*probe_collection*/ |
|---|
| 2061 | |
|---|
| 2062 | track %% (% |
|---|
| 2063 | %) /*track*/ |
|---|
| 2064 | |
|---|
| 2065 | |
|---|
| 2066 | submission %% (% |
|---|
| 2067 | %) /*submission*/ |
|---|
| 2068 | |
|---|
| 2069 | genom_db %i 0 |
|---|
| 2070 | configuration_data %% (% |
|---|
| 2071 | win0 %% (% |
|---|
| 2072 | %) /*win0*/ |
|---|
| 2073 | |
|---|
| 2074 | configuration %% (% |
|---|
| 2075 | name "default_configuration" |
|---|
| 2076 | top_area "\ASECOLI\ASHELIX\ASHELIX_NR" |
|---|
| 2077 | middle_area "\AGSAI-Maingroup\AFSAI:SAI's\ASCONSENSUS\AE\AE\AFMore Sequences\AE\AGAlpha, Beta and Gammaproteobacteria\AGGammaproteobacteria and Betaproteobacteria\AGEnterobacterales, Pasteurellales and Orbales\AGYersiniaceae, Hafniaceae and Budviciaceae\ALSrrAquat\AE\AE\ALMhyPalud\AE\AE" |
|---|
| 2078 | comment "This configuration will be OVERWRITTEN each time\nARB_EDIT4 is started w/o specifying a config!\n---\nMon Mar 18 11:21:17 2019: created for ARB_EDIT4 (tree=tree_LTPs132_SSU)\n" |
|---|
| 2079 | %) /*configuration*/ |
|---|
| 2080 | |
|---|
| 2081 | %) /*configuration_data*/ |
|---|
| 2082 | |
|---|
| 2083 | checks %% (% |
|---|
| 2084 | check "fix gene_data" |
|---|
| 2085 | check "fix_dict_compress" |
|---|
| 2086 | check "del_mark_move_REF" |
|---|
| 2087 | check "duplicated_item_colors" |
|---|
| 2088 | %) /*checks*/ |
|---|
| 2089 | |
|---|
