| 1 | /*ARBDB ASCII*/ |
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| 2 | genom_db %i 0 |
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| 3 | presets %% (% |
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| 4 | alignment :6000 %% (% |
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| 5 | alignment_name :7600 "ali_mini" |
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| 6 | alignment_len :7000 %i 187 |
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| 7 | aligned :7000 %i 1 |
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| 8 | alignment_write_security :7600 %i 0 |
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| 9 | alignment_type :7000 "rna" |
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| 10 | auto_format %i 0 |
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| 11 | alignment_rem "<NONE>" |
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| 12 | %) /*alignment*/ |
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| 13 | |
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| 14 | key_data %% (% |
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| 15 | key %% (% |
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| 16 | key_name "name" |
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| 17 | key_type %i 12 |
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| 18 | key_hidden %i 0 |
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| 19 | %) /*key*/ |
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| 20 | |
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| 21 | key %% (% |
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| 22 | key_name "acc" |
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| 23 | key_type %i 12 |
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| 24 | key_hidden %i 0 |
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| 25 | %) /*key*/ |
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| 26 | |
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| 27 | key %% (% |
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| 28 | key_name "ali_mini" |
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| 29 | key_type %i 15 |
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| 30 | key_hidden %i 0 |
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| 31 | %) /*key*/ |
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| 32 | |
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| 33 | key %% (% |
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| 34 | key_name "ali_mini/data" |
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| 35 | key_type %i 12 |
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| 36 | key_hidden %i 0 |
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| 37 | %) /*key*/ |
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| 38 | |
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| 39 | %) /*key_data*/ |
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| 40 | |
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| 41 | use "ali_mini" |
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| 42 | %) /*presets*/ |
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| 43 | |
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| 44 | species_data %% (% |
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| 45 | species %% (% |
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| 46 | name :7600 "BcSSSS00" |
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| 47 | ali_mini %% (% |
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| 48 | data :7000 "UUUAUCGGAGAGUUUGAUCAAGUCGAGCGG--ACAGA----U--GGGAGCUUGCUCCC-------UGAU--GUUAGCGGC-GGACGGACUCCGGGAAACCGGGGCUAAUACCGGAUGGU-GAUGAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCUCCUUUCU" |
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| 49 | %) /*ali_mini*/ |
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| 50 | |
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| 51 | acc "ARB_2CA9F764" |
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| 52 | %) /*species*/ |
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| 53 | |
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| 54 | species %% (% |
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| 55 | name :7600 "Bl0LLL00" |
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| 56 | ali_mini %% (% |
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| 57 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--ACCGA----C--GGGAGCUUGCUCCC-------UUAG--GUCAGCGGC-GGACGGACUCCGGGAAACCGGGGCUAAUACCGGAUGCU-GAUGAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUAUCGGAAGGUGCGGCUGGAUC..........." |
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| 58 | %) /*ali_mini*/ |
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| 59 | |
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| 60 | start %i 10 |
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| 61 | stop %i 20 |
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| 62 | acc "ARB_6B04C30A" |
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| 63 | %) /*species*/ |
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| 64 | |
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| 65 | species %% (% |
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| 66 | name :7600 "ClnCorin" |
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| 67 | ali_mini %% (% |
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| 68 | data :7000 ".........GAGUUUGAUCAAGUCGAG-------CGA----U--GAAGUUCCUUCGGGA------AUGG--AUUAGCGGC-GGACGGGCCUUUCGAAAGGAAGAUUAAUACCGCAUAAG-ACAGCGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGAGAACCUU--GCCUGGCUGGAUCAUC.." |
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| 69 | %) /*ali_mini*/ |
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| 70 | |
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| 71 | acc "ARB_CEB24FD3" |
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| 72 | %) /*species*/ |
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| 73 | |
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| 74 | species %% (% |
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| 75 | name :7600 "CltBotul" |
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| 76 | ali_mini %% (% |
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| 77 | data :7000 "................AUCAAGUCGAG-------CGA----U--GAAGCUUCUUCGGAA------GUGG--AUUAGCGGC-GGACGGGCCUUUCGAAAGGAAGAUUAAUACCUCAUAAG-ACAGCGAUUGGGGUGAAGUCGUAACAG---------------G--U------------------U.." |
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| 78 | %) /*ali_mini*/ |
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| 79 | |
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| 80 | acc "ARB_4FCDD74F" |
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| 81 | %) /*species*/ |
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| 82 | |
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| 83 | species %% (% |
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| 84 | name :7600 "CPPParap" |
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| 85 | ali_mini %% (% |
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| 86 | data :7000 "NNNNNNGA-GAGUUUGAUCAAGUCGAG-------CGA----U--GAAGUUCCUUCGGGA------ACGG--AUUAGCGGC-GGACGGGCCUUCCGAAAGGAAGAUUAAUACCGCAUAAGAUCAGCGAUUGGGGU-AAGUCGUAACAAGGUAGCCGUAGGAGAACCUGCGGNUGGAUCACCUCCUU.." |
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| 87 | %) /*ali_mini*/ |
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| 88 | |
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| 89 | acc "ARB_CF69AC5C" |
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| 90 | %) /*species*/ |
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| 91 | |
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| 92 | species %% (% |
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| 93 | name :7600 "ClfPerfr" |
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| 94 | ali_mini %% (% |
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| 95 | data :7000 "-AAAUUGA-GAGUUUGAUCAAGUCGAG-------CGA----U--GAAGUUUCCUUCGGGAA----ACGG--AUUAGCGGCGGGACGGGCCUUCAGAACCUGCGGCUGGAUCAUCAUAAUGCAGCGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGCGAAAGGAAGAUUAAUACCCCUCCUUUCU" |
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| 96 | %) /*ali_mini*/ |
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| 97 | |
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| 98 | acc "ARB_5BEE4C92" |
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| 99 | %) /*species*/ |
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| 100 | |
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| 101 | species %% (% |
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| 102 | name :7600 "DlcTolu2" |
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| 103 | ali_mini %% (% |
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| 104 | data :7000 "........AGAGUUUGAUCAAGUCGAACGA--G-AA-----AGGGAUUGCUUGCAAUCCU------GAG--UAGAGUGGC-GCACGGACUGCCCGAAAGGACAGCUAAUACCGGAUGAA-GAUAAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUUGAGGAAUCAGCGGCUGGAUCACCUCCUUNNN" |
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| 105 | %) /*ali_mini*/ |
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| 106 | |
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| 107 | acc "ARB_815E94DB" |
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| 108 | %) /*species*/ |
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| 109 | |
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| 110 | species %% (% |
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| 111 | name :7600 "PbcAcet2" |
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| 112 | ali_mini %% (% |
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| 113 | data :7000 "........AGAGUUUGAUCAAGUCGAACGU--G-AA-----A--GGGACUUCGGUCCU--------GAG--UAAAGUGGC-GCACGGACACUUCGAAAGGGGUGCUAAUACCGGAUAAG-GGUAACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUUNN" |
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| 114 | %) /*ali_mini*/ |
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| 115 | |
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| 116 | acc "ARB_CC2D184F" |
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| 117 | %) /*species*/ |
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| 118 | |
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| 119 | species %% (% |
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| 120 | name :7600 "PbrPropi" |
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| 121 | ali_mini %% (% |
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| 122 | data :7000 "........AGAGUUUGAUCAAGUCGAACGG--G-AUU----A--AGGGGCUUGCUCCU--------UAA--UCUAGUGGC-GCACGGACACUUCGAAAGAGGUGCUAAUACCUGAUAAG-GGUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUUNN" |
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| 123 | %) /*ali_mini*/ |
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| 124 | |
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| 125 | acc "ARB_2B59EE6C" |
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| 126 | %) /*species*/ |
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| 127 | |
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| 128 | species %% (% |
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| 129 | name :7600 "Stsssola" |
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| 130 | ali_mini %% (% |
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| 131 | data :7000 "AAACUGG-AGAGUUUGAUCAAGUCGAACGU--G-AA-----A-----GUCUUCGGGAU--------GAG--UAAAGUGGC-GCACGGACGGCUGGAAACGGUCGCUAAUACCGGAUAAC-AAUGAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUU.." |
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| 132 | %) /*ali_mini*/ |
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| 133 | |
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| 134 | acc "ARB_219182CE" |
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| 135 | %) /*species*/ |
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| 136 | |
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| 137 | species %% (% |
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| 138 | name :7600 "DsssDesu" |
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| 139 | ali_mini %% (% |
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| 140 | data :7000 "-AACUGG-AGAGUUUGAUCAAGUCGUACGA--G-AA-----AGGGG----CUUCGGCCCU------GAG--UAGAGUGGC-GCACGGACUCUGCGAAAGUGGAGCUAAUACCGGAUACA-G--------------A--------------------------------------------------G" |
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| 141 | %) /*ali_mini*/ |
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| 142 | |
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| 143 | acc "ARB_2F95EE99" |
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| 144 | %) /*species*/ |
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| 145 | |
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| 146 | species %% (% |
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| 147 | name :7600 "LgtLytic" |
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| 148 | ali_mini %% (% |
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| 149 | data :7000 "........AGAGUUUGAUCAAGUCGAACGGCAG-CACAGUCU--AGCUUGCUAGACGG--------GUG--GCGAGNGGC-GAACGGACUUGGGGAAACUCAAGCUAAUACCGCAUAAU-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUN..." |
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| 150 | %) /*ali_mini*/ |
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| 151 | |
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| 152 | acc "ARB_470564F9" |
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| 153 | %) /*species*/ |
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| 154 | |
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| 155 | species %% (% |
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| 156 | name :7600 "DcdNodos" |
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| 157 | ali_mini %% (% |
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| 158 | data :7000 "......AACUGAAGAGUUUGAUCAAGUCGAACGGGGUUAUGU----AGCUUGCUAUGUAA-----------CCUAGUGGC-GGACGGACGUAUGGAAACGUACGCUAAUACCGCAUAAG-GAUGACUGGGGUGAAGUCGUAACAA-GGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUU." |
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| 159 | %) /*ali_mini*/ |
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| 160 | |
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| 161 | acc "ARB_30B40050" |
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| 162 | %) /*species*/ |
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| 163 | |
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| 164 | species %% (% |
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| 165 | name :7600 "FrhhPhil" |
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| 166 | ali_mini %% (% |
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| 167 | data :7000 "UUG-----AAGAGUUGAUCAAGUCGAACGG--U-AA-----C--AGGUCUUCGGAUGC--------UGA--CGA-GUGGC-GGACGGCCAGUUGGAAACGACUGUUAAUACCGCAUAAU-CAUGACUGGGGUGAAGUCGUAACAAUGGUAGCCGUA-GGGAACCUGCGGCUGGAUCACCUCCUU..." |
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| 168 | %) /*ali_mini*/ |
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| 169 | |
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| 170 | acc "ARB_948948A3" |
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| 171 | %) /*species*/ |
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| 172 | |
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| 173 | species %% (% |
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| 174 | name :7600 "PsAAAA00" |
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| 175 | ali_mini %% (% |
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| 176 | data :7000 "N-----UACUGAAGAGUUUGAUCAAGUCGAGCGGAUG---AAGGG-AGCUUGCUCCUGGAUUC--------A---GCGGC-GGACGGACGUCCGGAAACGGGCGCUAAUACCGCAUACG-CAU------G--G------UAACAA-GG------------AA----C---C------------UG.." |
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| 177 | %) /*ali_mini*/ |
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| 178 | |
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| 179 | acc "ARB_AEBB7869" |
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| 180 | %) /*species*/ |
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| 181 | |
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| 182 | species %% (% |
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| 183 | name :7600 "PslFlave" |
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| 184 | ali_mini %% (% |
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| 185 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGGU...AGGGG-----AGCUUGCUCCCUGA--------UUC-----AGCGGC-GGACGGACGUUUCGAAAGGAACGCUAAUACCGCAUACG-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCU...." |
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| 186 | %) /*ali_mini*/ |
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| 187 | |
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| 188 | acc "ARB_1763CF6" |
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| 189 | %) /*species*/ |
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| 190 | |
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| 191 | species %% (% |
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| 192 | name :7600 "HllHalod" |
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| 193 | ali_mini %% (% |
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| 194 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--A-AACGAUGG--AAGCUUGCUUCCAG--------GCG--UCGAGCGGC-GGACGGACCUGGGGAAACUCAGGCUAAUACCGCAUACG-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUU..." |
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| 195 | %) /*ali_mini*/ |
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| 196 | |
|---|
| 197 | acc "ARB_2180C521" |
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| 198 | %) /*species*/ |
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| 199 | |
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| 200 | species %% (% |
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| 201 | name :7600 "VbrFurni" |
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| 202 | ali_mini %% (% |
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| 203 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--C-AGCGACA-ACAUUGAACCUUCGGGGGAUUUGUUGGGCGGCGAGCGGCGGACGGACCAUUGGAAACGAUGGCUAAUACCGCAUGAU-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCUUU.." |
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| 204 | %) /*ali_mini*/ |
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| 205 | |
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| 206 | start %i 20 |
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| 207 | stop %i 170 |
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| 208 | acc "ARB_4C6C9E8C" |
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| 209 | %) /*species*/ |
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| 210 | |
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| 211 | species %% (% |
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| 212 | name :7600 "VblVulni" |
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| 213 | ali_mini %% (% |
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| 214 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--C-AGC-----ACAGAGAAACUUG------UUUCUCGGGUGGCGAGCGGCGGACGGACCAUUGGAAACGAUGGCUAAUACCGCAUGAU-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCUUU.." |
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| 215 | %) /*ali_mini*/ |
|---|
| 216 | |
|---|
| 217 | acc "ARB_4E1D58F9" |
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| 218 | %) /*species*/ |
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| 219 | |
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| 220 | species %% (% |
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| 221 | name :7600 "VbhChole" |
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| 222 | ali_mini %% (% |
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| 223 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--C-AGC-----ACAGAGGAACUUG------UUCCUUGGGUGGCGAGCGGCGGACGGACCAUUGGAAACGAUGGCUAAUACCGCAUAAC-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCUUU.." |
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| 224 | %) /*ali_mini*/ |
|---|
| 225 | |
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| 226 | acc "ARB_FD102EA4" |
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| 227 | %) /*species*/ |
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| 228 | |
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| 229 | species %% (% |
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| 230 | name :7600 "AclPleur" |
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| 231 | ali_mini %% (% |
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| 232 | data :7000 "UG----AAUUGAAGAGUUUGAUCAAGUCGAACGGUAACGGGAAGGGAGCUUGCUUUCUUUGCCG-------ACGAGUGGC-GGACGGACUACGGGAAACUGUAGCUAAUACCGCGUAAU-CAUGACUGGGGUGAAGUCGUAGCAA-GGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA.." |
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| 233 | %) /*ali_mini*/ |
|---|
| 234 | |
|---|
| 235 | acc "ARB_9E1D1B16" |
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| 236 | %) /*species*/ |
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| 237 | |
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| 238 | species %% (% |
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| 239 | name :7600 "PtVVVulg" |
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| 240 | ali_mini %% (% |
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| 241 | data :7000 "U-----AAUUGAAGAGUUUGAUCAAGUCGAGCGGU...AGGAGAA-AGCUUGCUUUCUUGCUG--------ACGAGCGGC-GGACGGACUACUGGAAACGGUGGCUAAUACCGCAUGAC-CAUGACUGGGGUGAAGUCGUAACAA-GGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA.." |
|---|
| 242 | %) /*ali_mini*/ |
|---|
| 243 | |
|---|
| 244 | acc "ARB_ED8B86F" |
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| 245 | %) /*species*/ |
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| 246 | |
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| 247 | %) /*species_data*/ |
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| 248 | |
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| 249 | extended_data :7000 %% (% |
|---|
| 250 | extended %% (% |
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| 251 | name :7000 "ECOLI" |
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| 252 | acc "J01695" |
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| 253 | full_name "Escherichia coli" |
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| 254 | ali_mini %% (% |
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| 255 | data :7000 ".AAAUUGAAGAGUUUGAUCAUG----UCGAGCGGGCGGAACACAUGCAAAGCUUGCUUCUUUGCG------ACGAGUGGC-GGACGGGUGAGGGGAAACGGUAGCUAAUACCGCAUAAC-GAUGACUAAAGUUAAUACCUAUUGA-CGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAG.." |
|---|
| 256 | %) /*ali_mini*/ |
|---|
| 257 | |
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| 258 | %) /*extended*/ |
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| 259 | |
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| 260 | %) /*extended_data*/ |
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| 261 | |
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