root/branches/dev

Name Size Rev Age Last Change
../
AISC 7749 10 months westram: - comments (C->C++ style)
AISC_COM 8369 3 months westram: - use GBK_terminate instead of deref-NULL-SIGSEGV
AISC_MKPTPS 8368 3 months westram: leak; free/delete mismatch
ALIV3 7751 10 months westram: * updated many old-style typedefs (typedef struct/enum)
ARB_GDE 7920 9 months westram: merge from trunk [7915] [7916] [7919] * fixed ARBDB/CORE-library output …
ARBDB 8006 8 months westram: * added unit-tests for gene-ptserver - as produced by [7992] - …
AWT 7968 8 months westram: * fix NDEBUG tests - moved MemDump from AWT_db_browser.cxx to …
AWTC 7920 9 months westram: merge from trunk [7915] [7916] [7919] * fixed ARBDB/CORE-library output …
AWTI 7920 9 months westram: merge from trunk [7915] [7916] [7919] * fixed ARBDB/CORE-library output …
bin 7988 8 months westram: merge from trunk [7971] [7983] - collect_gene_info.pl
BINDEP 7903 9 months westram: merge from trunk [7895] [7896] [7897] [7898] [7899] * added arb_rnacma …
BUGEX 7044 19 months westram: * fixed include wrappers (merges [7006] [7007]) - use gcc-style …
CONSENSUS_TREE 7751 10 months westram: * updated many old-style typedefs (typedef struct/enum)
CONVERTALN 7773 10 months westram: * remove indirection via links in directory MAKEBIN - instead use aisc …
CORE 8219 6 months westram: * rewrote unit test code - uses expectations (inspired by hamcrest) …
DBSERVER 7749 10 months westram: - comments (C->C++ style)
DIST 8368 3 months westram: leak; free/delete mismatch
doc 6141 3 years westram: * spellchecked all (phew)
EDIT4 7955 8 months westram: * use GB_path_in_arbprop instead of hardcoded paths * fixed crash when …
EISPACK 7734 10 months westram: - no longer ignore 'Makefile.bak' - instead ignore '*.bak'
etc 6141 3 years westram: * spellchecked all (phew)
GDE 7889 9 months westram: merge from trunk [7737] [7739] [7759] [7885] [7886] [7887] [7888] * misc …
GDEHELP 7735 10 months westram: - no longer ignore 'ChangeLog' in subdirs
GENOM 7953 8 months westram: * changed handling of property files - GB_open mode 'D' uses …
GENOM_IMPORT 7859 9 months westram: - depends for [7858]
GL 7859 9 months westram: - depends for [7858]
HEADERLIBS 7903 9 months westram: merge from trunk [7895] [7896] [7897] [7898] [7899] * added arb_rnacma …
HELP_SOURCE 7989 8 months westram: merge from trunk [7933] [7935] [7936] [7937] [7980] [7986] [7987] * …
ISLAND_HOPPING 7749 10 months westram: - comments (C->C++ style)
lib 8006 8 months westram: * added unit-tests for gene-ptserver - as produced by [7992] - …
MERGE 7958 8 months westram: * removed unused default parameter from GBT_open - passed value was …
MULTI_PROBE 7989 8 months westram: merge from trunk [7933] [7935] [7936] [7937] [7980] [7986] [7987] * …
NALIGNER 7751 10 months westram: * updated many old-style typedefs (typedef struct/enum)
NAMES 7875 9 months westram: - expect gcc 4.3 or higher
NAMES_COM 7989 8 months westram: merge from trunk [7933] [7935] [7936] [7937] [7980] [7986] [7987] * …
NTREE 7958 8 months westram: * removed unused default parameter from GBT_open - passed value was …
PARSIMONY 7958 8 months westram: * removed unused default parameter from GBT_open - passed value was …
PERL2ARB 7903 9 months westram: merge from trunk [7895] [7896] [7897] [7898] [7899] * added arb_rnacma …
PERL_SCRIPTS 7988 8 months westram: merge from trunk [7971] [7983] - collect_gene_info.pl
PERLTOOLS 7781 10 months westram: * separate arb_proto_2_xsub from TOOLS - goal is to separate 'make …
PGT 7953 8 months westram: * changed handling of property files - GB_open mode 'D' uses …
PHYLO 7953 8 months westram: * changed handling of property files - GB_open mode 'D' uses …
PRIMER_DESIGN 7920 9 months westram: merge from trunk [7915] [7916] [7919] * fixed ARBDB/CORE-library output …
PROBE 8019 8 months westram: * probe_input_data - removed member 'match' (only used by dead-code …
PROBE_COM 7989 8 months westram: merge from trunk [7933] [7935] [7936] [7937] [7980] [7986] [7987] * …
PROBE_DESIGN 7989 8 months westram: merge from trunk [7933] [7935] [7936] [7937] [7980] [7986] [7987] * …
PROBE_SET 7751 10 months westram: * updated many old-style typedefs (typedef struct/enum)
ptpan 7989 8 months westram: merge from trunk [7933] [7935] [7936] [7937] [7980] [7986] [7987] * …
READSEQ 7734 10 months westram: - no longer ignore 'Makefile.bak' - instead ignore '*.bak'
RNA3D 7952 8 months westram: * DRYed - pd_edit_arb_tcp+edit_arb_tcp -> awt_edit_arbtcpdat_cb - …
RNACMA 7923 9 months westram: * fix compilation with coverage for RNACMA * link RNACMA.a only if …
SECEDIT 7955 8 months westram: * use GB_path_in_arbprop instead of hardcoded paths * fixed crash when …
SEQ_QUALITY 7920 9 months westram: merge from trunk [7915] [7916] [7919] * fixed ARBDB/CORE-library output …
SERVERCNTRL 8006 8 months westram: * added unit-tests for gene-ptserver - as produced by [7992] - …
SH 7735 10 months westram: - no longer ignore 'ChangeLog' in subdirs
SL 8219 6 months westram: * rewrote unit test code - uses expectations (inspired by hamcrest) …
SOURCE_TOOLS 8003 8 months westram: - depends
STAT 7959 8 months westram: * error handling fixes - GBT_open - use all errors from …
TEMPLATES 7969 8 months westram: * added unit-test for insert/delete-column and check/format-alignment (in …
TOOLS 8174 7 months westram: - localize logfiles using ARB_PID
TREEGEN 7751 10 months westram: * updated many old-style typedefs (typedef struct/enum)
UNIT_TESTER 8219 6 months westram: * rewrote unit test code - uses expectations (inspired by hamcrest) …
util 8009 8 months westram: - fix 'savetest'
WETC 7953 8 months westram: * changed handling of property files - GB_open mode 'D' uses …
WINDOW 7959 8 months westram: * error handling fixes - GBT_open - use all errors from …
XML 7735 10 months westram: - no longer ignore 'ChangeLog' in subdirs
XML_IMPORT 7749 10 months westram: - comments (C->C++ style)
!BRANCH_STATE 10.2 KB 8042 7 months westram: - updated
arb_CHANGES.txt 10.4 KB 6774 21 months westram: - merged changelog from stable (all changes are already in trunk)
arb_DEBUG.txt 1.2 KB 578 10 years westram: *** empty log message ***
arb_install.sh 14.3 KB 6350 2 years westram: - accept arb.tgz as file (not only as link). Needed if you install ARB …
arb_INSTALL.txt 3.7 KB 7131 15 months westram: - removed leftover doc-refs to xview
arb_LICENSE.txt 12.8 KB 7903 9 months westram: merge from trunk [7895] [7896] [7897] [7898] [7899] * added arb_rnacma …
arb_OS_X.txt 5.5 KB 6214 3 years westram: - updated OS_X info (thx to Matt)
arb_OS_X_MacPorts.txt 370 bytes 6288 2 years westram: * include ALL arb_*.txt into release tarball * renamed arb_README_gcc.txt …
arb_README.txt 6.2 KB 6211 3 years westram: * merged [6210] from stable
arb_UBUNTU.txt 1.2 KB 7654 11 months westram: * merge misc from trunk [7489] [7491] [7492] [7504] [7628] [7630] [7633] …
arbsrc_README.txt 210 bytes 6288 2 years westram: * include ALL arb_*.txt into release tarball * renamed arb_README_gcc.txt …
arbsrc_README_gcc.txt 2.1 KB 7350 14 months westram: * merges [7331] [7332] [7333] [7334] [7335] [7336] [7337] [7338] [7339] …
config.makefile.template 1.6 KB 7350 14 months westram: * merges [7331] [7332] [7333] [7334] [7335] [7336] [7337] [7338] [7339] …
demo.arb 78.9 KB 7509 13 months westram: - updated POS_VAR_BY_PARSIMONY - calculated upper bootstrap limits - …
Doxyfile 62.2 KB 8218 6 months westram: - increase graph depth to 3 - exclude HEADERLIBS
Makefile 56.2 KB 7998 8 months westram: - added a custom test for ptserver-build (does nothing by default)
README 0.7 KB 5390 4 years westram: - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    LIBLINK
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
    *.bak
    arb_time.log
    latest.patch
    patches.arb
    makeloc.here
    interdiff.patch
    white.patch
    latest_iwhite.patch
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