|
Last change
on this file was
17510,
checked in by westram, 6 years ago
|
|
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
1.3 KB
|
| Line | |
|---|
| 1 | // =============================================================== // |
|---|
| 2 | // // |
|---|
| 3 | // File : Translate.hxx // |
|---|
| 4 | // Purpose : Interface for Nucleotide->AA translation // |
|---|
| 5 | // // |
|---|
| 6 | // Coded by Ralf Westram (coder@reallysoft.de) in June 2006 // |
|---|
| 7 | // Institute of Microbiology (Technical University Munich) // |
|---|
| 8 | // http://www.arb-home.de/ // |
|---|
| 9 | // // |
|---|
| 10 | // =============================================================== // |
|---|
| 11 | |
|---|
| 12 | #ifndef TRANSLATE_HXX |
|---|
| 13 | #define TRANSLATE_HXX |
|---|
| 14 | |
|---|
| 15 | #ifndef ARBDB_BASE_H |
|---|
| 16 | #include <arbdb_base.h> |
|---|
| 17 | #endif |
|---|
| 18 | |
|---|
| 19 | // handle translation info stored in species fields: |
|---|
| 20 | GB_ERROR translate_getInfo(GBDATA *gb_species, int& arb_transl_table, int &codon_start); |
|---|
| 21 | GB_ERROR translate_saveInfo(GBDATA *gb_species, int arb_transl_table, int codon_start); |
|---|
| 22 | GB_ERROR translate_removeInfo(GBDATA *gb_species); |
|---|
| 23 | |
|---|
| 24 | // translate: |
|---|
| 25 | int translate_nuc2aa(int arb_code_nr, char *data, size_t size, size_t pos, bool translate_all, bool create_start_codon, bool append_stop_codon, int *translatedSize); |
|---|
| 26 | |
|---|
| 27 | #else |
|---|
| 28 | #error Translate.hxx included twice |
|---|
| 29 | #endif // TRANSLATE_HXX |
|---|
Note: See
TracBrowser
for help on using the repository browser.
