| 1 | #include "muscle.h" |
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| 2 | #include <stdio.h> |
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| 3 | #include <time.h> |
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| 4 | |
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| 5 | // Functions that provide visible feedback to the user |
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| 6 | // that progress is being made. |
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| 7 | |
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| 8 | static unsigned g_uIter = 0; // Main MUSCLE iteration 1, 2.. |
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| 9 | static unsigned g_uLocalMaxIters = 0; // Max iters |
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| 10 | static FILE *g_fProgress = stderr; // Default to standard error |
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| 11 | static char g_strFileName[32]; // File name |
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| 12 | static time_t g_tLocalStart; // Start time |
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| 13 | static char g_strDesc[32]; // Description |
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| 14 | static bool g_bWipeDesc = false; |
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| 15 | static int g_nPrevDescLength; |
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| 16 | static unsigned g_uTotalSteps; |
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| 17 | |
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| 18 | const char *ElapsedTimeAsStr() |
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| 19 | { |
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| 20 | time_t Now = time(0); |
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| 21 | unsigned long ElapsedSecs = (unsigned long) (Now - g_tLocalStart); |
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| 22 | return SecsToStr(ElapsedSecs); |
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| 23 | } |
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| 24 | |
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| 25 | const char *MemToStr(double MB) |
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| 26 | { |
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| 27 | if (MB < 0) |
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| 28 | return ""; |
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| 29 | |
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| 30 | static char Str[16]; |
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| 31 | static double MaxMB = 0; |
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| 32 | static double RAMMB = 0; |
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| 33 | |
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| 34 | if (RAMMB == 0) |
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| 35 | RAMMB = GetRAMSizeMB(); |
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| 36 | |
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| 37 | if (MB > MaxMB) |
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| 38 | MaxMB = MB; |
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| 39 | double Pct = (MaxMB*100.0)/RAMMB; |
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| 40 | if (Pct > 100) |
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| 41 | Pct = 100; |
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| 42 | sprintf(Str, "%.0f MB(%.0f%%)", MaxMB, Pct); |
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| 43 | return Str; |
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| 44 | } |
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| 45 | |
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| 46 | void SetInputFileName(const char *pstrFileName) |
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| 47 | { |
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| 48 | NameFromPath(pstrFileName, g_strFileName, sizeof(g_strFileName)); |
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| 49 | } |
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| 50 | |
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| 51 | void SetSeqStats(unsigned uSeqCount, unsigned uMaxL, unsigned uAvgL) |
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| 52 | { |
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| 53 | if (g_bQuiet) |
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| 54 | return; |
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| 55 | |
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| 56 | fprintf(g_fProgress, "%s %u seqs, max length %u, avg length %u\n", |
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| 57 | g_strFileName, uSeqCount, uMaxL, uAvgL); |
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| 58 | if (g_bVerbose) |
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| 59 | Log("%u seqs, max length %u, avg length %u\n", |
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| 60 | uSeqCount, uMaxL, uAvgL); |
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| 61 | } |
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| 62 | |
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| 63 | void SetStartTime() |
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| 64 | { |
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| 65 | time(&g_tLocalStart); |
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| 66 | } |
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| 67 | |
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| 68 | unsigned long GetStartTime() |
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| 69 | { |
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| 70 | return (unsigned long) g_tLocalStart; |
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| 71 | } |
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| 72 | |
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| 73 | void SetIter(unsigned uIter) |
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| 74 | { |
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| 75 | g_uIter = uIter; |
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| 76 | } |
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| 77 | |
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| 78 | void IncIter() |
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| 79 | { |
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| 80 | ++g_uIter; |
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| 81 | } |
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| 82 | |
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| 83 | void SetMaxIters(unsigned uMaxIters) |
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| 84 | { |
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| 85 | g_uLocalMaxIters = uMaxIters; |
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| 86 | } |
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| 87 | |
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| 88 | void SetProgressDesc(const char szDesc[]) |
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| 89 | { |
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| 90 | strncpy(g_strDesc, szDesc, sizeof(g_strDesc)); |
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| 91 | g_strDesc[sizeof(g_strDesc) - 1] = 0; |
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| 92 | } |
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| 93 | |
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| 94 | static void Wipe(int n) |
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| 95 | { |
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| 96 | for (int i = 0; i < n; ++i) |
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| 97 | fprintf(g_fProgress, " "); |
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| 98 | } |
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| 99 | |
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| 100 | void Progress(const char *szFormat, ...) |
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| 101 | { |
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| 102 | CheckMaxTime(); |
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| 103 | |
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| 104 | if (g_bQuiet) |
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| 105 | return; |
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| 106 | |
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| 107 | double MB = GetMemUseMB(); |
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| 108 | |
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| 109 | char szStr[4096]; |
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| 110 | va_list ArgList; |
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| 111 | va_start(ArgList, szFormat); |
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| 112 | vsprintf(szStr, szFormat, ArgList); |
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| 113 | |
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| 114 | fprintf(g_fProgress, "%8.8s %12s %s", |
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| 115 | ElapsedTimeAsStr(), |
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| 116 | MemToStr(MB), |
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| 117 | szStr); |
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| 118 | |
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| 119 | fprintf(g_fProgress, "\n"); |
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| 120 | fflush(g_fProgress); |
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| 121 | } |
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| 122 | |
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| 123 | void Progress(unsigned uStep, unsigned uTotalSteps) |
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| 124 | { |
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| 125 | CheckMaxTime(); |
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| 126 | |
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| 127 | if (g_bQuiet) |
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| 128 | return; |
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| 129 | |
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| 130 | double dPct = ((uStep + 1)*100.0)/uTotalSteps; |
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| 131 | double MB = GetMemUseMB(); |
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| 132 | fprintf(g_fProgress, "%8.8s %12s Iter %3u %6.2f%% %s", |
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| 133 | ElapsedTimeAsStr(), |
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| 134 | MemToStr(MB), |
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| 135 | g_uIter, |
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| 136 | dPct, |
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| 137 | g_strDesc); |
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| 138 | |
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| 139 | if (g_bWipeDesc) |
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| 140 | { |
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| 141 | int n = g_nPrevDescLength - (int) strlen(g_strDesc); |
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| 142 | Wipe(n); |
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| 143 | g_bWipeDesc = false; |
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| 144 | } |
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| 145 | |
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| 146 | fprintf(g_fProgress, "\r"); |
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| 147 | |
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| 148 | g_uTotalSteps = uTotalSteps; |
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| 149 | } |
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| 150 | |
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| 151 | void ProgressStepsDone() |
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| 152 | { |
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| 153 | CheckMaxTime(); |
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| 154 | |
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| 155 | if (g_bVerbose) |
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| 156 | { |
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| 157 | double MB = GetMemUseMB(); |
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| 158 | Log("Elapsed time %8.8s Peak memory use %12s Iteration %3u %s\n", |
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| 159 | ElapsedTimeAsStr(), |
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| 160 | MemToStr(MB), |
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| 161 | g_uIter, |
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| 162 | g_strDesc); |
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| 163 | } |
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| 164 | |
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| 165 | if (g_bQuiet) |
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| 166 | return; |
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| 167 | |
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| 168 | Progress(g_uTotalSteps - 1, g_uTotalSteps); |
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| 169 | fprintf(g_fProgress, "\n"); |
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| 170 | g_bWipeDesc = true; |
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| 171 | g_nPrevDescLength = (int) strlen(g_strDesc); |
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| 172 | } |
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