| 1 | |
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| 2 | #include "phylip.h" |
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| 3 | #include "moves.h" |
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| 4 | |
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| 5 | |
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| 6 | void inpnum(long *n, boolean *success) |
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| 7 | { |
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| 8 | /* used by dnamove, dolmove, move, & retree */ |
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| 9 | int fields; |
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| 10 | char line[100]; |
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| 11 | |
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| 12 | #ifdef WIN32 |
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| 13 | phyFillScreenColor(); |
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| 14 | #endif |
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| 15 | getstryng(line); |
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| 16 | *n = atof(line); |
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| 17 | fields = sscanf(line,"%ld",n); |
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| 18 | *success = (fields == 1); |
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| 19 | } /* inpnum */ |
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| 20 | |
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| 21 | |
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| 22 | void prereverse(boolean local_ansi) |
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| 23 | { |
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| 24 | /* turn on reverse video */ |
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| 25 | printf(local_ansi ? "\033[7m": ""); |
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| 26 | } /* prereverse */ |
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| 27 | |
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| 28 | |
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| 29 | void postreverse(boolean local_ansi) |
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| 30 | { |
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| 31 | /* turn off reverse video */ |
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| 32 | printf(local_ansi ? "\033[0m" : ""); |
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| 33 | } /* postreverse */ |
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| 34 | |
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| 35 | |
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| 36 | void chwrite(Char ch, long num, long *pos, long leftedge, long screenwidth) |
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| 37 | { |
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| 38 | long i; |
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| 39 | |
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| 40 | for (i = 1; i <= num; i++) { |
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| 41 | if ((*pos) >= leftedge && (*pos) - leftedge + 1 < screenwidth) |
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| 42 | putchar(ch); |
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| 43 | (*pos)++; |
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| 44 | } |
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| 45 | } /* chwrite */ |
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| 46 | |
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| 47 | |
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| 48 | void nnwrite(long nodenum,long num,long *pos,long leftedge,long screenwidth) |
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| 49 | { |
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| 50 | long i, leftx; |
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| 51 | |
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| 52 | leftx = leftedge - (*pos); |
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| 53 | if ((*pos) >= leftedge && (*pos) - leftedge + num < screenwidth) |
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| 54 | printf("%*ld", (int)num, nodenum); |
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| 55 | else if (leftx > 0 && leftx < 3) |
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| 56 | for(i=0;i<num-leftx;i++) |
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| 57 | printf(" "); |
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| 58 | (*pos) += num; |
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| 59 | } /* nnwrite */ |
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| 60 | |
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| 61 | |
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| 62 | void stwrite(const char *s,long local_length,long *pos,long leftedge, |
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| 63 | long screenwidth) |
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| 64 | { |
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| 65 | |
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| 66 | if ((*pos) >= leftedge && (*pos) - leftedge + 1 < screenwidth) |
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| 67 | printf("%*s", (int)local_length, s); |
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| 68 | (*pos) += local_length; |
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| 69 | } /* stwrite */ |
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| 70 | |
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| 71 | |
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| 72 | void help(const char *letters) |
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| 73 | { |
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| 74 | /* display help information */ |
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| 75 | char input[100]; |
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| 76 | |
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| 77 | printf("\n\nR Rearrange a tree by moving a node or group\n"); |
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| 78 | printf("# Show the states of the next %s that doesn't fit tree\n", letters); |
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| 79 | printf("+ Show the states of the next %s\n", letters); |
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| 80 | printf("- ... of the previous %s\n", letters); |
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| 81 | printf("S Show the states of a given %s\n", letters); |
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| 82 | printf(". redisplay the same tree again\n"); |
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| 83 | printf("T Try all possible positions of a node or group\n"); |
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| 84 | printf("U Undo the most recent rearrangement\n"); |
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| 85 | printf("W Write tree to a file\n"); |
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| 86 | printf("O select an Outgroup for the tree\n"); |
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| 87 | printf("F Flip (rotate) branches at a node\n"); |
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| 88 | printf("H Move viewing window to the left\n"); |
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| 89 | printf("J Move viewing window downward\n"); |
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| 90 | printf("K Move viewing window upward\n"); |
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| 91 | printf("L Move viewing window to the right\n"); |
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| 92 | printf("C show only one Clade (subtree) (useful if tree is too big)\n"); |
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| 93 | printf("? Help (this screen)\n"); |
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| 94 | printf("Q (Quit) Exit from program\n"); |
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| 95 | printf("X Exit from program\n\n\n"); |
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| 96 | printf("TO CONTINUE, PRESS ON THE Return OR Enter KEY"); |
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| 97 | #ifdef WIN32 |
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| 98 | phyFillScreenColor(); |
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| 99 | #endif |
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| 100 | getstryng(input); |
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| 101 | } /* help */ |
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| 102 | |
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| 103 | |
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| 104 | void treeoptions(boolean waswritten, Char *ch, FILE **fp_outtree, |
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| 105 | Char *outtreename, Char *progname) |
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| 106 | { /* interactively get options for writing a tree */ |
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| 107 | char input[100]; |
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| 108 | |
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| 109 | if (waswritten) { |
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| 110 | printf("\nTree file already was open.\n"); |
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| 111 | printf(" A Add to this tree to tree file\n"); |
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| 112 | printf(" R Replace tree file contents by this tree\n"); |
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| 113 | printf(" F Write out tree to a different tree file\n"); |
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| 114 | printf(" N Do Not write out this tree\n"); |
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| 115 | do { |
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| 116 | printf("Which should we do? "); |
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| 117 | #ifdef WIN32 |
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| 118 | phyFillScreenColor(); |
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| 119 | #endif |
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| 120 | getstryng(input); |
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| 121 | *ch = input[0]; |
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| 122 | uppercase(ch); |
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| 123 | } while (*ch != 'A' && *ch != 'R' && *ch != 'N' && *ch != 'F'); |
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| 124 | } |
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| 125 | if (*ch == 'F'){ |
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| 126 | outtreename[0] = '\0'; |
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| 127 | while (outtreename[0] =='\0'){ |
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| 128 | printf("Please enter a tree file name>"); |
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| 129 | #ifdef MAC |
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| 130 | fixmacfile(outtreename); |
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| 131 | #endif |
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| 132 | #ifdef WIN32 |
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| 133 | phyFillScreenColor(); |
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| 134 | #endif |
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| 135 | getstryng(outtreename); |
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| 136 | } |
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| 137 | FClose(*fp_outtree); |
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| 138 | } |
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| 139 | if (*ch == 'R' || *ch == 'A' || *ch == 'F' || !waswritten){ |
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| 140 | openfile(fp_outtree,outtreename,"output tree file", |
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| 141 | (*ch == 'A' && waswritten) ? "a" : "w", |
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| 142 | progname,outtreename); |
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| 143 | } |
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| 144 | } /* treeoptions */ |
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| 145 | |
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| 146 | |
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| 147 | void window(adjwindow action, long *leftedge, long *topedge, long hscroll, |
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| 148 | long vscroll, long treelines, long screenlines, |
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| 149 | long screenwidth, long farthest, boolean subtree) |
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| 150 | { |
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| 151 | /* move viewing window of tree */ |
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| 152 | switch (action) { |
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| 153 | |
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| 154 | case left: |
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| 155 | if (*leftedge != 1) |
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| 156 | *leftedge -= hscroll; |
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| 157 | break; |
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| 158 | |
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| 159 | case downn: |
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| 160 | /* The 'topedge + 6' is needed to allow downward scrolling |
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| 161 | when part of the tree is above the screen and only 1 or 2 lines |
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| 162 | are below it. */ |
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| 163 | if (treelines - *topedge + 6 >= screenlines) |
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| 164 | *topedge += vscroll; |
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| 165 | break; |
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| 166 | |
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| 167 | case upp: |
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| 168 | if (*topedge != 1) |
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| 169 | *topedge -= vscroll; |
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| 170 | break; |
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| 171 | |
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| 172 | case right: |
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| 173 | if ((farthest + 6 + nmlngth + ((subtree) ? 8 : 0)) > |
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| 174 | (*leftedge + screenwidth)) |
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| 175 | *leftedge += hscroll; |
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| 176 | break; |
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| 177 | } |
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| 178 | } /* window */ |
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| 179 | |
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| 180 | |
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| 181 | void pregraph(boolean local_ansi) |
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| 182 | { |
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| 183 | /* turn on graphic characters */ |
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| 184 | /* used in move & dolmove */ |
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| 185 | printf(local_ansi ? "\033(0" : ""); |
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| 186 | } /* pregraph */ |
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| 187 | |
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| 188 | |
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| 189 | void pregraph2(boolean local_ansi) |
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| 190 | { |
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| 191 | /* turn on graphic characters */ |
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| 192 | /* used in dnamove & retree */ |
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| 193 | if (local_ansi) { |
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| 194 | printf("\033(0"); |
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| 195 | printf("\033[10m"); |
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| 196 | } |
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| 197 | } /* pregraph2 */ |
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| 198 | |
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| 199 | |
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| 200 | void postgraph(boolean local_ansi) |
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| 201 | { |
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| 202 | /* turn off graphic characters */ |
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| 203 | /* used in move & dolmove */ |
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| 204 | printf(local_ansi ? "\033(B" : ""); |
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| 205 | } /* postgraph */ |
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| 206 | |
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| 207 | |
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| 208 | void postgraph2(boolean local_ansi) |
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| 209 | { |
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| 210 | /* turn off graphic characters */ |
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| 211 | /* used in dnamove & retree */ |
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| 212 | if (local_ansi) { |
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| 213 | printf("\033[11m"); |
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| 214 | printf("\033(B"); |
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| 215 | } |
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| 216 | } /* postgraph2 */ |
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| 217 | |
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| 218 | |
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| 219 | void nextinc(long *dispchar, long *dispword, long *dispbit, long chars, |
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| 220 | long local_bits, boolean *display, steptr numsteps, steptr weight) |
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| 221 | { |
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| 222 | /* show next incompatible character */ |
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| 223 | /* used in move & dolmove */ |
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| 224 | long disp0; |
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| 225 | boolean done; |
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| 226 | |
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| 227 | *display = true; |
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| 228 | disp0 = *dispchar; |
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| 229 | done = false; |
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| 230 | do { |
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| 231 | (*dispchar)++; |
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| 232 | if (*dispchar > chars) { |
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| 233 | *dispchar = 1; |
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| 234 | done = (disp0 == 0); |
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| 235 | } |
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| 236 | } while (!(numsteps[*dispchar - 1] > |
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| 237 | weight[*dispchar - 1] || |
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| 238 | *dispchar == disp0 || done)); |
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| 239 | *dispword = (*dispchar - 1) / local_bits + 1; |
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| 240 | *dispbit = (*dispchar - 1) % local_bits + 1; |
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| 241 | } /* nextinc */ |
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| 242 | |
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| 243 | |
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| 244 | void nextchar(long *dispchar, long *dispword, long *dispbit, long chars, |
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| 245 | long local_bits, boolean *display) |
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| 246 | { |
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| 247 | /* show next character */ |
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| 248 | /* used in move & dolmove */ |
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| 249 | *display = true; |
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| 250 | (*dispchar)++; |
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| 251 | if (*dispchar > chars) |
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| 252 | *dispchar = 1; |
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| 253 | *dispword = (*dispchar - 1) / local_bits + 1; |
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| 254 | *dispbit = (*dispchar - 1) % local_bits + 1; |
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| 255 | } /* nextchar */ |
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| 256 | |
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| 257 | |
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| 258 | void prevchar(long *dispchar, long *dispword, long *dispbit, long chars, |
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| 259 | long local_bits, boolean *display) |
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| 260 | { |
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| 261 | /* show previous character */ |
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| 262 | /* used in move & dolmove */ |
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| 263 | *display = true; |
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| 264 | (*dispchar)--; |
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| 265 | if (*dispchar < 1) |
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| 266 | *dispchar = chars; |
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| 267 | *dispword = (*dispchar - 1) / local_bits + 1; |
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| 268 | *dispbit = (*dispchar - 1) % local_bits + 1; |
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| 269 | } /* prevchar */ |
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| 270 | |
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| 271 | |
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| 272 | void show(long *dispchar, long *dispword, long *dispbit, long chars, |
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| 273 | long local_bits, boolean *display) |
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| 274 | { |
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| 275 | /* used in move & dolmove */ |
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| 276 | long i; |
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| 277 | boolean ok; |
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| 278 | |
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| 279 | do { |
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| 280 | printf("SHOW: (Character number or 0 to see none)? "); |
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| 281 | inpnum(&i, &ok); |
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| 282 | ok = (ok && (i == 0 || (i >= 1 && i <= chars))); |
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| 283 | if (ok && i != 0) { |
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| 284 | *display = true; |
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| 285 | *dispchar = i; |
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| 286 | *dispword = (i - 1) / local_bits + 1; |
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| 287 | *dispbit = (i - 1) % local_bits + 1; |
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| 288 | } |
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| 289 | if (ok && i == 0) |
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| 290 | *display = false; |
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| 291 | } while (!ok); |
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| 292 | } /* show */ |
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| 293 | |
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