source: branches/lib/HELP_SOURCE/source/sec_bonddef.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
File size: 1.3 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4
5#       sub topics:
6#SUB     subtopic.hlp
7
8# format described in ../help.readme
9
10
11TITLE           SECEDIT bond definitions
12
13OCCURRENCE      ARB_SECEDIT/Properties/Display options/<DEFINE button>
14
15DESCRIPTION     Allows to define how different bonds are displayed in ARB_SECEDIT.
16
17                Currently the following symbols will be drawn as shapes: .o~#=+-
18                and the resize and rotate with the base characters they are attached to.
19
20                    All other symbols will be shown as "text" string,
21                    i.e. will neighter scale nor rotate.
22
23                Which base pairs translate into which symbol is defined
24                in EDIT4 (see LINK{helixsym.hlp}).
25
26                Here you may define a translation from symbols defined in EDIT4,
27                to shape-symbols used in SECEDIT.
28
29                   To reproduce the default bond display behavior as used up to arb 7.0,
30                   you may click the config manager icon in LINK{sec_display.hlp} and
31                   restore the predefined config named '*bonds_arb7'.
32
33                   When both fields are empty, ARB_SECEDIT uses the same symbols
34                   as shown below the sequence in EDIT4.
35
36NOTES           None
37
38EXAMPLES        None
39
40WARNINGS        None
41
42BUGS            No bugs known
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