| 1 | /*ARBDB ASCII*/ |
|---|
| 2 | genom_db %i 0 |
|---|
| 3 | presets %% (% |
|---|
| 4 | alignment :6000 %% (% |
|---|
| 5 | alignment_name :7600 "ali_mini" |
|---|
| 6 | alignment_len :7000 %i 187 |
|---|
| 7 | aligned :7000 %i 1 |
|---|
| 8 | alignment_write_security :7600 %i 0 |
|---|
| 9 | alignment_type :7000 "rna" |
|---|
| 10 | auto_format %i 0 |
|---|
| 11 | alignment_rem "<NONE>" |
|---|
| 12 | %) /*alignment*/ |
|---|
| 13 | |
|---|
| 14 | key_data %% (% |
|---|
| 15 | key %% (% |
|---|
| 16 | key_name "name" |
|---|
| 17 | key_type %i 12 |
|---|
| 18 | key_hidden %i 0 |
|---|
| 19 | %) /*key*/ |
|---|
| 20 | |
|---|
| 21 | key %% (% |
|---|
| 22 | key_name "acc" |
|---|
| 23 | key_type %i 12 |
|---|
| 24 | key_hidden %i 0 |
|---|
| 25 | %) /*key*/ |
|---|
| 26 | |
|---|
| 27 | key %% (% |
|---|
| 28 | key_name "ali_mini" |
|---|
| 29 | key_type %i 15 |
|---|
| 30 | key_hidden %i 0 |
|---|
| 31 | %) /*key*/ |
|---|
| 32 | |
|---|
| 33 | key %% (% |
|---|
| 34 | key_name "ali_mini/data" |
|---|
| 35 | key_type %i 12 |
|---|
| 36 | key_hidden %i 0 |
|---|
| 37 | %) /*key*/ |
|---|
| 38 | |
|---|
| 39 | %) /*key_data*/ |
|---|
| 40 | |
|---|
| 41 | use "ali_mini" |
|---|
| 42 | %) /*presets*/ |
|---|
| 43 | |
|---|
| 44 | species_data %% (% |
|---|
| 45 | species %% (% |
|---|
| 46 | name :7600 "BcSSSS00" |
|---|
| 47 | ali_mini %% (% |
|---|
| 48 | data :7000 "UUUAUCGGAGAGUUUGAUCAAGUCGAGCGG--ACAGA----U--GGGAGCUUGCUCCC-------UGAU--GUUAGCGGC-GGACGGACUCCGGGAAACCGGGGCUAAUACCGGAUGGU-GAUGAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCUCCUUUCU" |
|---|
| 49 | %) /*ali_mini*/ |
|---|
| 50 | |
|---|
| 51 | acc "ARB_2CA9F764" |
|---|
| 52 | %) /*species*/ |
|---|
| 53 | |
|---|
| 54 | species %% (% |
|---|
| 55 | name :7600 "Bl0LLL00" |
|---|
| 56 | ali_mini %% (% |
|---|
| 57 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--ACCGA----C--GGGAGCUUGCUCCC-------UUAG--GUCAGCGGC-GGACGGACUCCGGGAAACCGGGGCUAAUACCGGAUGCU-GAUGAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUAUCGGAAGGUGCGGCUGGAUC..........." |
|---|
| 58 | %) /*ali_mini*/ |
|---|
| 59 | |
|---|
| 60 | start %i 10 |
|---|
| 61 | stop %i 20 |
|---|
| 62 | acc "ARB_6B04C30A" |
|---|
| 63 | %) /*species*/ |
|---|
| 64 | |
|---|
| 65 | species %% (% |
|---|
| 66 | name :7600 "ClnCorin" |
|---|
| 67 | ali_mini %% (% |
|---|
| 68 | data :7000 ".........GAGUUUGAUCAAGUCGAG-------CGA----U--GAAGUUCCUUCGGGA------AUGG--AUUAGCGGC-GGACGGGCCUUUCGAAAGGAAGAUUAAUACCGCAUAAG-ACAGCGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGAGAACCUU--GCCUGGCUGGAUCAUC.." |
|---|
| 69 | %) /*ali_mini*/ |
|---|
| 70 | |
|---|
| 71 | acc "ARB_CEB24FD3" |
|---|
| 72 | %) /*species*/ |
|---|
| 73 | |
|---|
| 74 | species %% (% |
|---|
| 75 | name :7600 "CltBotul" |
|---|
| 76 | ali_mini %% (% |
|---|
| 77 | data :7000 "................AUCAAGUCGAG-------CGA----U--GAAGCUUCUUCGGAA------GUGG--AUUAGCGGC-GGACGGGCCUUUCGAAAGGAAGAUUAAUACCUCAUAAG-ACAGCGAUUGGGGUGAAGUCGUAACAG---------------G--U------------------U.." |
|---|
| 78 | %) /*ali_mini*/ |
|---|
| 79 | |
|---|
| 80 | acc "ARB_4FCDD74F" |
|---|
| 81 | %) /*species*/ |
|---|
| 82 | |
|---|
| 83 | species %% (% |
|---|
| 84 | name :7600 "CPPParap" |
|---|
| 85 | ali_mini %% (% |
|---|
| 86 | data :7000 "NNNNNNGA-GAGUUUGAUCAAGUCGAG-------CGA----U--GAAGUUCCUUCGGGA------ACGG--AUUAGCGGC-GGACGGGCCUUCCGAAAGGAAGAUUAAUACCGCAUAAGAUCAGCGAUUGGGGU-AAGUCGUAACAAGGUAGCCGUAGGAGAACCUGCGGNUGGAUCACCUCCUU.." |
|---|
| 87 | %) /*ali_mini*/ |
|---|
| 88 | |
|---|
| 89 | acc "ARB_CF69AC5C" |
|---|
| 90 | %) /*species*/ |
|---|
| 91 | |
|---|
| 92 | species %% (% |
|---|
| 93 | name :7600 "ClfPerfr" |
|---|
| 94 | ali_mini %% (% |
|---|
| 95 | data :7000 "-AAAUUGA-GAGUUUGAUCAAGUCGAG-------CGA----U--GAAGUUUCCUUCGGGAA----ACGG--AUUAGCGGCGGGACGGGCCUUCAGAACCUGCGGCUGGAUCAUCAUAAUGCAGCGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAGGCGAAAGGAAGAUUAAUACCCCUCCUUUCU" |
|---|
| 96 | %) /*ali_mini*/ |
|---|
| 97 | |
|---|
| 98 | acc "ARB_5BEE4C92" |
|---|
| 99 | %) /*species*/ |
|---|
| 100 | |
|---|
| 101 | species %% (% |
|---|
| 102 | name :7600 "DlcTolu2" |
|---|
| 103 | ali_mini %% (% |
|---|
| 104 | data :7000 "........AGAGUUUGAUCAAGUCGAACGA--G-AA-----AGGGAUUGCUUGCAAUCCU------GAG--UAGAGUGGC-GCACGGACUGCCCGAAAGGACAGCUAAUACCGGAUGAA-GAUAAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUUGAGGAAUCAGCGGCUGGAUCACCUCCUUNNN" |
|---|
| 105 | %) /*ali_mini*/ |
|---|
| 106 | |
|---|
| 107 | acc "ARB_815E94DB" |
|---|
| 108 | %) /*species*/ |
|---|
| 109 | |
|---|
| 110 | species %% (% |
|---|
| 111 | name :7600 "PbcAcet2" |
|---|
| 112 | ali_mini %% (% |
|---|
| 113 | data :7000 "........AGAGUUUGAUCAAGUCGAACGU--G-AA-----A--GGGACUUCGGUCCU--------GAG--UAAAGUGGC-GCACGGACACUUCGAAAGGGGUGCUAAUACCGGAUAAG-GGUAACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUUNN" |
|---|
| 114 | %) /*ali_mini*/ |
|---|
| 115 | |
|---|
| 116 | acc "ARB_CC2D184F" |
|---|
| 117 | %) /*species*/ |
|---|
| 118 | |
|---|
| 119 | species %% (% |
|---|
| 120 | name :7600 "PbrPropi" |
|---|
| 121 | ali_mini %% (% |
|---|
| 122 | data :7000 "........AGAGUUUGAUCAAGUCGAACGG--G-AUU----A--AGGGGCUUGCUCCU--------UAA--UCUAGUGGC-GCACGGACACUUCGAAAGAGGUGCUAAUACCUGAUAAG-GGUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUUNN" |
|---|
| 123 | %) /*ali_mini*/ |
|---|
| 124 | |
|---|
| 125 | acc "ARB_2B59EE6C" |
|---|
| 126 | %) /*species*/ |
|---|
| 127 | |
|---|
| 128 | species %% (% |
|---|
| 129 | name :7600 "Stsssola" |
|---|
| 130 | ali_mini %% (% |
|---|
| 131 | data :7000 "AAACUGG-AGAGUUUGAUCAAGUCGAACGU--G-AA-----A-----GUCUUCGGGAU--------GAG--UAAAGUGGC-GCACGGACGGCUGGAAACGGUCGCUAAUACCGGAUAAC-AAUGAUUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUUU.." |
|---|
| 132 | %) /*ali_mini*/ |
|---|
| 133 | |
|---|
| 134 | acc "ARB_219182CE" |
|---|
| 135 | %) /*species*/ |
|---|
| 136 | |
|---|
| 137 | species %% (% |
|---|
| 138 | name :7600 "DsssDesu" |
|---|
| 139 | ali_mini %% (% |
|---|
| 140 | data :7000 "-AACUGG-AGAGUUUGAUCAAGUCGUACGA--G-AA-----AGGGG----CUUCGGCCCU------GAG--UAGAGUGGC-GCACGGACUCUGCGAAAGUGGAGCUAAUACCGGAUACA-G--------------A--------------------------------------------------G" |
|---|
| 141 | %) /*ali_mini*/ |
|---|
| 142 | |
|---|
| 143 | acc "ARB_2F95EE99" |
|---|
| 144 | %) /*species*/ |
|---|
| 145 | |
|---|
| 146 | species %% (% |
|---|
| 147 | name :7600 "LgtLytic" |
|---|
| 148 | ali_mini %% (% |
|---|
| 149 | data :7000 "........AGAGUUUGAUCAAGUCGAACGGCAG-CACAGUCU--AGCUUGCUAGACGG--------GUG--GCGAGNGGC-GAACGGACUUGGGGAAACUCAAGCUAAUACCGCAUAAU-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUN..." |
|---|
| 150 | %) /*ali_mini*/ |
|---|
| 151 | |
|---|
| 152 | acc "ARB_470564F9" |
|---|
| 153 | %) /*species*/ |
|---|
| 154 | |
|---|
| 155 | species %% (% |
|---|
| 156 | name :7600 "DcdNodos" |
|---|
| 157 | ali_mini %% (% |
|---|
| 158 | data :7000 "......AACUGAAGAGUUUGAUCAAGUCGAACGGGGUUAUGU----AGCUUGCUAUGUAA-----------CCUAGUGGC-GGACGGACGUAUGGAAACGUACGCUAAUACCGCAUAAG-GAUGACUGGGGUGAAGUCGUAACAA-GGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUU." |
|---|
| 159 | %) /*ali_mini*/ |
|---|
| 160 | |
|---|
| 161 | acc "ARB_30B40050" |
|---|
| 162 | %) /*species*/ |
|---|
| 163 | |
|---|
| 164 | species %% (% |
|---|
| 165 | name :7600 "FrhhPhil" |
|---|
| 166 | ali_mini %% (% |
|---|
| 167 | data :7000 "UUG-----AAGAGUUGAUCAAGUCGAACGG--U-AA-----C--AGGUCUUCGGAUGC--------UGA--CGA-GUGGC-GGACGGCCAGUUGGAAACGACUGUUAAUACCGCAUAAU-CAUGACUGGGGUGAAGUCGUAACAAUGGUAGCCGUA-GGGAACCUGCGGCUGGAUCACCUCCUU..." |
|---|
| 168 | %) /*ali_mini*/ |
|---|
| 169 | |
|---|
| 170 | acc "ARB_948948A3" |
|---|
| 171 | %) /*species*/ |
|---|
| 172 | |
|---|
| 173 | species %% (% |
|---|
| 174 | name :7600 "PsAAAA00" |
|---|
| 175 | ali_mini %% (% |
|---|
| 176 | data :7000 "N-----UACUGAAGAGUUUGAUCAAGUCGAGCGGAUG---AAGGG-AGCUUGCUCCUGGAUUC--------A---GCGGC-GGACGGACGUCCGGAAACGGGCGCUAAUACCGCAUACG-CAU------G--G------UAACAA-GG------------AA----C---C------------UG.." |
|---|
| 177 | %) /*ali_mini*/ |
|---|
| 178 | |
|---|
| 179 | acc "ARB_AEBB7869" |
|---|
| 180 | %) /*species*/ |
|---|
| 181 | |
|---|
| 182 | species %% (% |
|---|
| 183 | name :7600 "PslFlave" |
|---|
| 184 | ali_mini %% (% |
|---|
| 185 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGGU...AGGGG-----AGCUUGCUCCCUGA--------UUC-----AGCGGC-GGACGGACGUUUCGAAAGGAACGCUAAUACCGCAUACG-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCU...." |
|---|
| 186 | %) /*ali_mini*/ |
|---|
| 187 | |
|---|
| 188 | acc "ARB_1763CF6" |
|---|
| 189 | %) /*species*/ |
|---|
| 190 | |
|---|
| 191 | species %% (% |
|---|
| 192 | name :7600 "HllHalod" |
|---|
| 193 | ali_mini %% (% |
|---|
| 194 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--A-AACGAUGG--AAGCUUGCUUCCAG--------GCG--UCGAGCGGC-GGACGGACCUGGGGAAACUCAGGCUAAUACCGCAUACG-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUU..." |
|---|
| 195 | %) /*ali_mini*/ |
|---|
| 196 | |
|---|
| 197 | acc "ARB_2180C521" |
|---|
| 198 | %) /*species*/ |
|---|
| 199 | |
|---|
| 200 | species %% (% |
|---|
| 201 | name :7600 "VbrFurni" |
|---|
| 202 | ali_mini %% (% |
|---|
| 203 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--C-AGCGACA-ACAUUGAACCUUCGGGGGAUUUGUUGGGCGGCGAGCGGCGGACGGACCAUUGGAAACGAUGGCUAAUACCGCAUGAU-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCUUU.." |
|---|
| 204 | %) /*ali_mini*/ |
|---|
| 205 | |
|---|
| 206 | start %i 20 |
|---|
| 207 | stop %i 170 |
|---|
| 208 | acc "ARB_4C6C9E8C" |
|---|
| 209 | %) /*species*/ |
|---|
| 210 | |
|---|
| 211 | species %% (% |
|---|
| 212 | name :7600 "VblVulni" |
|---|
| 213 | ali_mini %% (% |
|---|
| 214 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--C-AGC-----ACAGAGAAACUUG------UUUCUCGGGUGGCGAGCGGCGGACGGACCAUUGGAAACGAUGGCUAAUACCGCAUGAU-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCUUU.." |
|---|
| 215 | %) /*ali_mini*/ |
|---|
| 216 | |
|---|
| 217 | acc "ARB_4E1D58F9" |
|---|
| 218 | %) /*species*/ |
|---|
| 219 | |
|---|
| 220 | species %% (% |
|---|
| 221 | name :7600 "VbhChole" |
|---|
| 222 | ali_mini %% (% |
|---|
| 223 | data :7000 "........AGAGUUUGAUCAAGUCGAGCGG--C-AGC-----ACAGAGGAACUUG------UUCCUUGGGUGGCGAGCGGCGGACGGACCAUUGGAAACGAUGGCUAAUACCGCAUAAC-CAUGACUGGGGUGAAGUCGUAACAA-GGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCUUU.." |
|---|
| 224 | %) /*ali_mini*/ |
|---|
| 225 | |
|---|
| 226 | acc "ARB_FD102EA4" |
|---|
| 227 | %) /*species*/ |
|---|
| 228 | |
|---|
| 229 | species %% (% |
|---|
| 230 | name :7600 "AclPleur" |
|---|
| 231 | ali_mini %% (% |
|---|
| 232 | data :7000 "UG----AAUUGAAGAGUUUGAUCAAGUCGAACGGUAACGGGAAGGGAGCUUGCUUUCUUUGCCG-------ACGAGUGGC-GGACGGACUACGGGAAACUGUAGCUAAUACCGCGUAAU-CAUGACUGGGGUGAAGUCGUAGCAA-GGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA.." |
|---|
| 233 | %) /*ali_mini*/ |
|---|
| 234 | |
|---|
| 235 | acc "ARB_9E1D1B16" |
|---|
| 236 | %) /*species*/ |
|---|
| 237 | |
|---|
| 238 | species %% (% |
|---|
| 239 | name :7600 "PtVVVulg" |
|---|
| 240 | ali_mini %% (% |
|---|
| 241 | data :7000 "U-----AAUUGAAGAGUUUGAUCAAGUCGAGCGGU...AGGAGAA-AGCUUGCUUUCUUGCUG--------ACGAGCGGC-GGACGGACUACUGGAAACGGUGGCUAAUACCGCAUGAC-CAUGACUGGGGUGAAGUCGUAACAA-GGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA.." |
|---|
| 242 | %) /*ali_mini*/ |
|---|
| 243 | |
|---|
| 244 | acc "ARB_ED8B86F" |
|---|
| 245 | %) /*species*/ |
|---|
| 246 | |
|---|
| 247 | %) /*species_data*/ |
|---|
| 248 | |
|---|
| 249 | extended_data :7000 %% (% |
|---|
| 250 | extended %% (% |
|---|
| 251 | name :7000 "ECOLI" |
|---|
| 252 | acc "J01695" |
|---|
| 253 | full_name "Escherichia coli" |
|---|
| 254 | ali_mini %% (% |
|---|
| 255 | data :7000 ".AAAUUGAAGAGUUUGAUCAUG----UCGAGCGGGCGGAACACAUGCAAAGCUUGCUUCUUUGCG------ACGAGUGGC-GGACGGGUGAGGGGAAACGGUAGCUAAUACCGCAUAAC-GAUGACUAAAGUUAAUACCUAUUGA-CGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAG.." |
|---|
| 256 | %) /*ali_mini*/ |
|---|
| 257 | |
|---|
| 258 | %) /*extended*/ |
|---|
| 259 | |
|---|
| 260 | %) /*extended_data*/ |
|---|
| 261 | |
|---|