source: branches/profile/GDE/PHYML/simu.h

Last change on this file was 4073, checked in by westram, 13 years ago
  • phyml 2.4.5
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 803 bytes
Line 
1/*
2
3PHYML :  a program that  computes maximum likelihood  phylogenies from
4DNA or AA homologous sequences
5
6Copyright (C) Stephane Guindon. Oct 2003 onward
7
8All parts of  the source except where indicated  are distributed under
9the GNU public licence.  See http://www.opensource.org for details.
10
11*/
12
13#ifndef CURR_H
14#define CURR_H
15
16void Simu(arbre *tree,int n_step_max);
17void Select_Edges_To_Swap(arbre *tree,edge **sorted_b,int *n_neg);
18void Fix_All(arbre *tree);
19void Update_Bl(arbre *tree,double fact);
20void Make_N_Swap(arbre *tree,edge **b,int beg,int end);
21int Make_Best_Swap(arbre *tree);
22int Mov_Backward_Topo_Bl(arbre *tree,double lk_old,edge **tested_b,int n_tested);
23void Unswap_N_Branch(arbre *tree,edge **b,int beg,int end);
24void Swap_N_Branch(arbre *tree,edge **b,int beg,int end);
25
26#endif
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