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Last change
on this file was
11886,
checked in by westram, 10 years ago
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- reintegrates 'cleanup' into 'trunk'
- adds:
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-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
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File size:
1.1 KB
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| Line | |
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| 1 | item:DeSoete Tree fit |
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| 2 | itemmeta: S |
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| 3 | seqtype:* |
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| 4 | itemmethod: GOTO_LOCAL_DIR; \ |
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| 5 | (RUN_IN_WINDOW((arb_readseq -a -f8 TmpInputFile >fasta.flat;\ |
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| 6 | count -t $CORR fasta.flat >count.out;\ |
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| 7 | lsadt <count.out -seed $SEED -init $INIT -empty -99.9 > outtree;\ |
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| 8 | $DISPLAY_FUNC));\ |
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| 9 | RM_LOCAL_FILES(TmpInputFile fasta.flat count.out outtree) )& |
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| 10 | itemhelp:lsadt.help |
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| 11 | |
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| 12 | in:TmpInputFile |
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| 13 | informat:genbank |
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| 14 | insave: |
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| 15 | |
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| 16 | arg:CORR |
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| 17 | arglabel:Dist. correction? |
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| 18 | argtype:choice_menu |
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| 19 | argchoice:Olsen:-c=olsen |
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| 20 | argchoice:Jukes/Cantor:-c=jukes |
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| 21 | argchoice:None:-c=none |
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| 22 | |
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| 23 | arg:INIT |
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| 24 | arglabel:Parameter estimate |
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| 25 | argtype:choice_menu |
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| 26 | argchoice:uniformly distributed random numbers:1 |
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| 27 | argchoice:error-perturbed data:2 |
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| 28 | argchoice:original distance data from input matrix:3 |
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| 29 | |
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| 30 | arg:SEED |
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| 31 | argtype:slider |
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| 32 | arglabel:Random nr. seed |
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| 33 | argmin:0 |
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| 34 | argmax:65535 |
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| 35 | argvalue:12345 |
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| 36 | |
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| 37 | arg:DISPLAY_FUNC |
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| 38 | argtype:choice_menu |
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| 39 | arglabel:View tree using |
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| 40 | argchoice:ARB ('tree_desoete'):arb_read_tree tree_desoete_$$ outtree "PRG=DeSoete CORR=$CORR FILTER=$FILTER" |
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| 41 | argchoice:TextEdit:arb_textedit outtree & |
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| 42 | argchoice:Treetool:treetool outtree |
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