|
Last change
on this file was
11886,
checked in by westram, 10 years ago
|
- reintegrates 'cleanup' into 'trunk'
- adds:
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
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File size:
905 bytes
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| Line | |
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| 1 | item:AxML + FastdnaML |
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| 2 | seqtype: N |
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| 3 | itemmeta: A |
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| 4 | itemmethod:(GOTO_LOCAL_DIR ; \ |
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| 5 | arb_export_rates --arb-notify "$RATES" "T 2.0" "Y 1" "$QUICKADD" | GEN_FASTDNAML(infile) && \ |
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| 6 | RUN_IN_WINDOW((cp infile last.infile; time arb_fastdnaml $PROGRAM && $DISPLAY_FUNC)); \ |
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| 7 | RM_LOCAL_FILES(TmpInputFile last.infile) )& |
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| 8 | |
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| 9 | itemhelp:dnaml.help |
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| 10 | |
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| 11 | arg:RATES |
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| 12 | argtype:weights |
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| 13 | arglabel:Select a Weighting Mask |
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| 14 | argchoice:POS_VAR_BY_PAR |
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| 15 | |
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| 16 | arg:PROGRAM |
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| 17 | argtype:choice_menu |
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| 18 | arglabel:Select program to use |
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| 19 | argchoice:AxML:axml |
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| 20 | argchoice:FastdnaML:fastdnaml |
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| 21 | |
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| 22 | arg:QUICKADD |
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| 23 | argtype:choice_menu |
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| 24 | arglabel:Use Quickadd |
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| 25 | argchoice:Yes: |
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| 26 | argchoice:No:Q |
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| 27 | |
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| 28 | arg:DISPLAY_FUNC |
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| 29 | argtype:choice_menu |
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| 30 | arglabel:What to do with the tree? |
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| 31 | argchoice:ARB ('tree_fml_...'):arb_read_tree tree_fml_$$ treefile "PRG=$PROGRAM FILTER=$FILTER RATE=$RATES" |
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| 32 | argchoice:Treetool:treetool treefile |
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| 33 | |
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| 34 | in:TmpInputFile |
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| 35 | informat:genbank |
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| 36 | insave: |
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| 37 | |
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