source: branches/profile/GDEHELP/MENUS/phylip_dist_org.menu

Last change on this file was 11886, checked in by westram, 10 years ago
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 992 bytes
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1item:Phylip Distance Methods (Original Phylip, Interactive)
2itemmeta: I
3seqtype:*
4itemmethod:(GOTO_LOCAL_DIR;GEN_PHYLIP(infile) && \
5            RUN_IN_WINDOW(($DPGM;\
6                           mv -f outfile infile;\
7                           (${ARB_XCMD} $PROGRAM || STOP_ON_FAILURE($PROGRAM)) && \
8                           $DISPLAY_FUNC));\
9            RM_LOCAL_FILES(TmpInputFile))&
10itemhelp:phylip_distance.help
11
12arg:DISPLAY_FUNC
13argtype:choice_menu
14arglabel:What to do with the tree?
15argchoice:ARB ('tree_ph_xxx'):(arb_read_tree tree_ph_$$ outtree "PRG=$PROGRAM FILTER=$FILTER PKG=phylip (Interactive)")
16argchoice:TextEdit:arb_textedit outtree
17argchoice:Treetool:treetool outtree
18
19arg:PROGRAM
20arglabel:Which method?
21argtype:choice_menu
22argchoice:Fitch:fitch
23argchoice:Kitsch:kitsch
24argchoice:Neighbor:neighbor
25
26arg:DPGM
27arglabel:Treat data as..
28argtype:choice_menu
29argchoice:RNA/DNA (dnadist):dnadist
30argchoice:AA      (protdist):protdist
31
32
33in:TmpInputFile
34informat:genbank
35insave:
36
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