1 | SEQUENCE DATA SUBMISSION FORM |
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2 | |
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3 | |
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4 | This form solicits the information needed for a nucleotide or amino acid |
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5 | sequence database entry. It can be filled in using any text editor or |
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6 | printed and filled in by hand. By completing and returning it to us |
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7 | promptly you help us to enter your data in the database accurately and |
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8 | rapidly. These data will be shared among the following databases: EMBL |
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9 | Data Library (Heidelberg, W. Germany); GenBank (Los Alamos, NM, U.S.A. and |
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10 | Mountain View, CA, U.S.A), DNA Data Bank of Japan (DDBJ; Tokyo, Japan); |
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11 | National Biomedical Research Foundation Protein Identification Resource |
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12 | (NBRF-PIR; Washington, D.C., U.S.A.); Martinsried Institute for Protein |
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13 | Sequence Data (MIPS; Martinsried, W. Germany) and International Protein |
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14 | Information Database in Japan (JIPID; Tokyo). |
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15 | |
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16 | Please answer all questions which apply to your data. If you submit 2 or |
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17 | more non-contiguous sequences, copy and fill out this form for each |
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18 | additional sequence. When submitting nucleic acid sequences containing |
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19 | protein coding regions, please include a translation (SEPARATELY from the |
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20 | nucleic acid sequence). Then send us (1) this form, (2) a pre- or reprint |
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21 | of any manuscript which pertains to these data, and (3) your sequence data. |
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22 | You can send these materials (a) electronically via computer network, (b) on |
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23 | magnetic tape, or (c) on a floppy diskette. More detailed information about |
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24 | formats for submitted data is included at the end of this form. |
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25 | |
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26 | our mailing address: EMBL Data Library Submissions, Postfach 10.2209 |
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27 | D-6900 Heidelberg, West Germany |
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28 | telephone: (06221) 387 258 |
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29 | computer network: datasubs@embl.earn (for data submissions) |
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30 | datalib@embl.earn (for general inquiries) |
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31 | |
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32 | Please include in your submission any additional sequence data which is not |
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33 | reported in your manuscript but which has been reliably determined (for |
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34 | example, introns or flanking sequences). |
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35 | |
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36 | When we receive this material we will assign the data an accession number, |
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37 | which serves as a reference that permanently identifies them in the |
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38 | database. We will inform you what accession number your data have been |
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39 | given and we recommend that you cite this number when referring to these |
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40 | data in publications. |
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41 | |
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42 | If new data become available which would make the database entry more |
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43 | informative (e.g., function of the gene product or location of important |
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44 | sites within the sequence), or if you discover errors in the sequence, we |
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45 | urge you to contact us so that we can update your entry. |
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46 | |
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47 | Thank you. |
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48 | |
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49 | |
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50 | I. GENERAL INFORMATION |
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51 | ============================================================================== |
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52 | Your name $(YOUR NAME) |
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53 | ------------------------------------------------------------------------------ |
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54 | Institution $(INSTITUTION) |
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55 | ------------------------------------------------------------------------------ |
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56 | Address $(ADDRESS) |
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57 | ------------------------------------------------------------------------------ |
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58 | Computer mail address $(MAIL) Telex number |
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59 | ------------------------------------------------------------------------------ |
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60 | Telephone $(PHONE) Telefax number $(TELEFAX) |
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61 | ============================================================================== |
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62 | On what medium and in what format are you sending us your sequence data? |
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63 | (see instructions at the end of this form) |
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64 | [X] electronic mail |
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65 | [ ] diskette |
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66 | computer:Commodore operating system:MS DOS editor: |
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67 | [ ] magnetic tape |
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68 | record length: blocksize: label type: |
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69 | density [ ] 800 [ ] 1600 [ ] 6250 |
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70 | character code [ ] ASCII [ ] EBCDIC |
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71 | ============================================================================== |
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72 | |
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73 | |
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74 | II. CITATION INFORMATION |
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75 | ============================================================================== |
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76 | These data are [ ] published [X] in press [ ] submitted [ ] in preparation |
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77 | [ ] no plans to publish |
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78 | ------------------------------------------------------------------------------ |
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79 | authors $(author) |
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80 | ------------------------------------------------------------------------------ |
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81 | title of paper $(title) ------------------------------------------------------------------------------ |
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82 | journal volume, first-last pages, $(journal) ------------------------------------------------------------------------------ |
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83 | Do you agree that these data can be made available in the database before |
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84 | they appear in print? |
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85 | [ ] yes [x] no, they should be made available only after publication. |
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86 | estimated date: $(DATE) |
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87 | ============================================================================== |
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88 | Does the sequence which you are sending with this form include data that |
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89 | do NOT appear in the above citation? |
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90 | [X] no [ ] yes, from position ______ to ______ [ ] base pairs OR |
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91 | [ ] amino acid residues |
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92 | (If your sequence contains 2 or more such spans, use the feature |
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93 | table in section IV to indicate their positions) |
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94 | If so, how should these data be cited in the database? |
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95 | [ ] published [ ] in press [ ] submitted [ ] in preparation |
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96 | [ ] no plans to publish |
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97 | ------------------------------------------------------------------------------ |
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98 | authors |
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99 | ------------------------------------------------------------------------------ |
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100 | address (if different from that given in section I) |
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101 | |
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102 | |
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103 | ------------------------------------------------------------------------------ |
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104 | title of paper |
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105 | |
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106 | ------------------------------------------------------------------------------ |
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107 | journal volume, first-last pages, year |
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108 | ============================================================================== |
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109 | List references to papers and/or database entries which report sequences |
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110 | overlapping with that submitted here. |
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111 | |
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112 | 1st author journal, vol., pages, year and/or database, accession number |
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113 | ------------------------------------------------------------------------------ |
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114 | |
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115 | ------------------------------------------------------------------------------ |
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116 | |
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117 | ============================================================================== |
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118 | |
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119 | |
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120 | III. DESCRIPTION OF SEQUENCED SEGMENT |
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121 | |
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122 | Wherever possible, please use standard nomenclature or conventions. If a |
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123 | question is not applicable to your sequence, answer by writing N.A. in the |
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124 | appropriate space; if the information is relevant but not available, write |
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125 | a question mark (?). |
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126 | ============================================================================== |
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127 | What kind of molecule did you sequence? (check all boxes which apply) |
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128 | |
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129 | [X] genomic DNA [ ] genomic RNA [ ] virus or [ ] provirus |
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130 | [ ] cDNA to mRNA [ ] cDNA to genomic RNA |
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131 | [ ] organelle DNA [ ] organelle RNA please specify organelle: |
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132 | [ ] tRNA [ ] rRNA [ ] snRNA [ ] scRNA |
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133 | [ ] other nucleic acid. please specify: |
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134 | [ ] peptide [ ] sequence assembled by [ ] overlap of sequenced fragments |
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135 | [ ] homology with related sequence |
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136 | [ ] other. please specify: |
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137 | |
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138 | [ ] partial: [ ] N-terminal |
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139 | [ ] C-terminal |
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140 | [ ] internal fragment |
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141 | ============================================================================== |
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142 | length of sequence $(SEQ_LEN) [X] base pairs or [ ] amino acid residues |
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143 | ------------------------------------------------------------------------------ |
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144 | gene name(s) (e.g., lacZ) $(gene) |
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145 | ------------------------------------------------------------------------------ |
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146 | gene product name(s) (e.g., beta-D-galactosidase) $(gene) |
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147 | ------------------------------------------------------------------------------ |
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148 | Enzyme Commission number (e.g., EC 3.2.1.23) |
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149 | ------------------------------------------------------------------------------ |
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150 | gene product subunit structure (e.g., hemoglobin alpha-2 beta-2) |
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151 | ============================================================================== |
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152 | The following items refer to the original source of the molecule you have |
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153 | sequenced. |
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154 | organism ---- name $(full_name) |
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155 | ------------------------------------------------------------------------------ |
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156 | sub-species strain $(strain) |
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157 | ------------------------------------------------------------------------------ |
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158 | name/number of individual or isolate (e.g., patient 123; influenza virus |
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159 | A/PR/8/34) |
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160 | ------------------------------------------------------------------------------ |
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161 | developmental stage [ ] germ line [ ] rearranged |
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162 | ------------------------------------------------------------------------------ |
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163 | haplotype tissue type cell type |
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164 | ============================================================================== |
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165 | The following items refer to the immediate experimental source of the |
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166 | submitted sequence. |
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167 | name of cell line (e.g., Hela; 3T3-L1) |
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168 | ------------------------------------------------------------------------------ |
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169 | library (type; name) clone(s) |
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170 | ============================================================================== |
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171 | The following items refer to the position of the submitted sequence in the |
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172 | genome. |
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173 | chromosome (or segment) name/number |
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174 | ------------------------------------------------------------------------------ |
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175 | map position units: [ ] genome % [ ] nucleotide number |
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176 | [ ] other: |
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177 | ============================================================================== |
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178 | Using single words or short phrases, describe the properties of the sequence |
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179 | in terms of: |
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180 | |
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181 | - its associated phenotype(s); |
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182 | - the biological/enzymatic activity of its product; |
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183 | - the general functional classification of the gene and/or gene product |
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184 | - macromolecules to which the gene product can bind (e.g., DNA, calcium, |
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185 | other proteins); |
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186 | - subcellular localization of the gene product; |
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187 | - any other relevant information. |
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188 | |
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189 | Example (for the viral erbB nucleotide sequence): transforming capacity; EGF |
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190 | receptor-related; tyrosine kinase; oncogene; transmembrane protein. |
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191 | |
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192 | |
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193 | ============================================================================== |
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194 | |
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195 | |
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196 | IV. FEATURES OF THE SEQUENCE |
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197 | |
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198 | Please list below the types and locations of all significant features |
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199 | experimentally identified within the sequence. Be sure that your sequence |
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200 | is numbered beginning with "1." |
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201 | |
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202 | In the column marked fill in |
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203 | |
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204 | feature type of feature (see information below) |
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205 | from number of first base/amino acid in the feature |
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206 | to number of last base/amino acid in the feature |
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207 | bp x, if numbering refers to position of a base pair in |
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208 | a nucleotide sequence |
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209 | aa x, if numbering refers to position of an amino acid |
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210 | residue in a peptide sequence |
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211 | id indicate method by which the feature was identified. |
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212 | E = experimentally; S = by similarity to known |
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213 | sequence or to an established consensus sequence; P = |
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214 | by similarity to some other pattern, such as an |
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215 | open reading frame |
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216 | comp x, if feature is located on the nucleic acid strand |
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217 | complementary to that reported here |
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218 | |
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219 | Significant features include: |
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220 | |
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221 | - regulatory signals (e.g., promoters, attenuators, enhancers) |
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222 | - transcribed regions (e.g., mRNA, rRNA, tRNA). (indicate reading frame |
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223 | if start and stop codons are not present) |
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224 | - regions subject to post-transcriptional modificaton (e.g., introns, |
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225 | modified bases) |
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226 | - translated regions |
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227 | - extent of signal peptide, prepropeptide, propeptide, mature peptide |
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228 | - regions subject to post-translational modification (e.g., glycosylated |
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229 | or phosphorylated sites) |
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230 | - other domains/sites of interest (e.g., extracellular domain, DNA- |
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231 | binding domain, active site, inhibitory site) |
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232 | - sites involved in bonding (disulfide, thiolester, intrachain, interchain) |
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233 | - regions of protein secondary structure (e.g., alpha helix or beta sheet) |
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234 | - conflicts with sequence data reported by other authors |
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235 | - variations and polymorphisms |
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236 | |
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237 | The first 2 lines of the table are filled in with examples. |
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238 | |
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239 | ============================================================================== |
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240 | Numbering for features on submitted sequence [X] matches manuscript |
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241 | [ ] does not match manuscript |
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242 | ============================================================================== |
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243 | feature from to bp aa id comp |
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244 | ------------------------------------------------------------------------------ |
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245 | EXAMPLE TATA box 1 8 x S |
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246 | ------------------------------------------------------------------------------ |
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247 | EXAMPLE exon 1 9 264 x |
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248 | ============================================================================== |
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249 | $(gene) 1 $(SEQ_LEN) x |
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250 | |
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251 | ------------------------------------------------------------------------------ |
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252 | $(tax) |
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253 | ------------------------------------------------------------------------------ |
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254 | |
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255 | ------------------------------------------------------------------------------ |
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256 | |
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257 | ------------------------------------------------------------------------------ |
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258 | |
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259 | ------------------------------------------------------------------------------ |
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260 | |
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261 | ------------------------------------------------------------------------------ |
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262 | |
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263 | ------------------------------------------------------------------------------ |
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264 | |
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265 | ============================================================================== |
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266 | |
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267 | |
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268 | |
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269 | FORMATS FOR SUBMITTED DATA |
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270 | |
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271 | We are happy to accept data submitted in any of the following formats: |
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272 | |
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273 | (1) Electronic file transfer: files can be sent via computer network to: |
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274 | DATASUBS@EMBL.EARN. This BITNET/EARN address can be reached via various |
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275 | gateways from Arpanet, Usenet, JANET, etc. Ask your local network expert |
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276 | for help or phone us. |
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277 | |
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278 | (2) Magnetic tapes: 9-track only (fixed-length records preferred); 800, |
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279 | 1600 or 6250 bpi (any blocksize); ASCII or EBCDIC character codes; any label |
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280 | type or unlabelled. |
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281 | |
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282 | (3) Floppy disks: we can read Macintosh diskettes and 5-1/4" diskettes from |
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283 | MS-DOS systems. |
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284 | |
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285 | Whatever format you choose, we would appreciate receiving the sequence data |
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286 | in a form which conforms as closely as possible to the following standards. |
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287 | |
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288 | - Each sequence should include the names of the authors. |
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289 | |
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290 | - Each distinct sequence should be listed separately using the same number |
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291 | of bases/residues per line. The length of each sequence in bases/ |
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292 | residues should be clearly indicated. |
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293 | |
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294 | - Enumeration should begin with a "1" and continue in the direction 5' to |
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295 | 3' (or amino- to carboxy-terminus). |
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296 | |
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297 | - Amino acid sequences should be listed using the one-letter code. |
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298 | |
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299 | - Translations of protein coding regions in nucleotide sequences should |
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300 | be submitted in a separate computer file from the nucleotide sequences |
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301 | themselves. |
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302 | |
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303 | - The code for representing the sequence characters should conform to the |
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304 | IUPAC-IUB standards, which are described in: Nucl. Acids Res. 13: 3021- |
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305 | 3030 (1985) (for nucleic acids) and J. Biol. Chem. 243: 3557-3559 |
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306 | (1968) and Eur. J. Biochem 5: 151-153 (1968) (for amino acids). |
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307 | |
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308 | $(SEQUENCE) |
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309 | |
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310 | |
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