root/branches/ptpan_back

Name Size Rev Age Last Change
../
AISC 7811 9 months westram: merge from dev [7748] [7749] [7750] * comments (C->C++ style) * fixed …
AISC_COM 8091 7 months westram: * added template IGNORE_RESULT(), to ignore results tagged with …
AISC_MKPTPS 8072 7 months westram: - really fix linefeeds
ALIV3 7812 9 months westram: merge from dev [7751] [7752] * updated many old-style typedefs (typedef …
ARB_GDE 7916 9 months westram: * removed AWAR_DTREE_REFRESH (-> AWAR_TREE_REFRESH) * DRYed …
ARBDB 8128 7 months westram: * removed test-db generation example
AWT 8077 7 months westram: * GB_time_of_file - moved to CORE - no longer automatically …
AWTC 8078 7 months westram: * added PTPAN flag - to probe-admin-window - to server-functions …
AWTI 8076 7 months westram: - moved basic file related functions from ARBDB to CORE
bin 8026 7 months westram: * link arb_ptserver and arb_ptpan separately - only link arb_ptpan vs …
BINDEP 8026 7 months westram: * link arb_ptserver and arb_ptpan separately - only link arb_ptpan vs …
BUGEX 7044 19 months westram: * fixed include wrappers (merges [7006] [7007]) - use gcc-style …
CONSENSUS_TREE 7812 9 months westram: merge from dev [7751] [7752] * updated many old-style typedefs (typedef …
CONVERTALN 8076 7 months westram: - moved basic file related functions from ARBDB to CORE
CORE 8079 7 months westram: * avoid overwriting non-generated headers
DBSERVER 8113 7 months westram: * removed demo-test from [8112] * added + use descriptive macro …
DIST 8058 7 months westram: - fixed abuse of GB_export_errorf
doc 6141 3 years westram: * spellchecked all (phew)
EDIT4 8078 7 months westram: * added PTPAN flag - to probe-admin-window - to server-functions …
EISPACK 7803 9 months westram: merge from dev [7716] [7732] [7733] [7734] [7735] * script to add+remove …
etc 6141 3 years westram: * spellchecked all (phew)
GDE 8060 7 months eissler: More patches to bring PTPan up to current version (bugfixes and …
GDEHELP 7803 9 months westram: merge from dev [7716] [7732] [7733] [7734] [7735] * script to add+remove …
GENOM 8051 7 months westram: * removed possibility to execute command via DB-server - always use …
GENOM_IMPORT 7814 9 months westram: merge from dev [7760] [7761] [7763] [7764] [7765] * Gene location editor …
GL 7811 9 months westram: merge from dev [7748] [7749] [7750] * comments (C->C++ style) * fixed …
HEADERLIBS 8175 7 months eissler: Updated boost::atomic to solve some issues deactivated some experimental …
HELP_SOURCE 7987 8 months westram: * support new probe match params introduced in [7986] from ARB_NT (fixes …
ISLAND_HOPPING 7811 9 months westram: merge from dev [7748] [7749] [7750] * comments (C->C++ style) * fixed …
lib 8078 7 months westram: * added PTPAN flag - to probe-admin-window - to server-functions …
MERGE 8076 7 months westram: - moved basic file related functions from ARBDB to CORE
MULTI_PROBE 8078 7 months westram: * added PTPAN flag - to probe-admin-window - to server-functions …
NALIGNER 8091 7 months westram: * added template IGNORE_RESULT(), to ignore results tagged with …
NAMES 8076 7 months westram: - moved basic file related functions from ARBDB to CORE
NAMES_COM 8091 7 months westram: * added template IGNORE_RESULT(), to ignore results tagged with …
NTREE 8125 7 months westram: * do not crash if no alignments exist
PARSIMONY 8044 7 months westram: merge from trunk [8028] [8031] [8035] [8036] [8037] [8038] [8039] [8040] …
PERL2ARB 7895 9 months westram: * added arb_rnacma (correlated mutation analysis) written by Breno Faria …
PERL_SCRIPTS 7971 8 months westram: - perl script to collect information from gene-field and store it into …
PERLTOOLS 7819 9 months westram: merge from dev [7774] [7778] [7779] [7780] [7781] [7782] [7783] [7784] …
PGT 8044 7 months westram: merge from trunk [8028] [8031] [8035] [8036] [8037] [8038] [8039] [8040] …
PHYLO 8044 7 months westram: merge from trunk [8028] [8031] [8035] [8036] [8037] [8038] [8039] [8040] …
PRIMER_DESIGN 7930 9 months westram: merge from dev [7875] * expect gcc 4.3 or higher
PROBE 8078 7 months westram: * added PTPAN flag - to probe-admin-window - to server-functions …
PROBE_COM 8091 7 months westram: * added template IGNORE_RESULT(), to ignore results tagged with …
PROBE_DESIGN 8078 7 months westram: * added PTPAN flag - to probe-admin-window - to server-functions …
PROBE_SET 7812 9 months westram: merge from dev [7751] [7752] * updated many old-style typedefs (typedef …
ptpan 8294 5 months eissler: PTPan: removed some compiler warnings
PTWRAPPER 8080 7 months eissler: PTPan: reject sequences which are too short (min size = 54 bases)
READSEQ 7803 9 months westram: merge from dev [7716] [7732] [7733] [7734] [7735] * script to add+remove …
RNA3D 8044 7 months westram: merge from trunk [8028] [8031] [8035] [8036] [8037] [8038] [8039] [8040] …
RNACMA 7925 9 months westram: merge from dev [7821] [7822] [7923] * fix build with COVERAGE (broken by …
SECEDIT 8076 7 months westram: - moved basic file related functions from ARBDB to CORE
SEQ_QUALITY 7916 9 months westram: * removed AWAR_DTREE_REFRESH (-> AWAR_TREE_REFRESH) * DRYed …
SERVERCNTRL 8078 7 months westram: * added PTPAN flag - to probe-admin-window - to server-functions …
SH 8022 8 months westram: - added libboost-all-dev to compile-prerequisites
SL 8078 7 months westram: * added PTPAN flag - to probe-admin-window - to server-functions …
SOURCE_TOOLS 8115 7 months westram: - use MEMORY_TEST==1 with unit-tests - dont valgrind file descriptor, …
STAT 8044 7 months westram: merge from trunk [8028] [8031] [8035] [8036] [8037] [8038] [8039] [8040] …
TEMPLATES 8091 7 months westram: * added template IGNORE_RESULT(), to ignore results tagged with …
TOOLS 8078 7 months westram: * added PTPAN flag - to probe-admin-window - to server-functions …
TREEGEN 7812 9 months westram: merge from dev [7751] [7752] * updated many old-style typedefs (typedef …
UNIT_TESTER 8127 7 months westram: * added a unit-test revealing the everlasting de-compression-bug (see …
util 8045 7 months westram: merge from trunk [8041] * unit tests fail (problem with DEADLOCKGUARD)
WETC 8044 7 months westram: merge from trunk [8028] [8031] [8035] [8036] [8037] [8038] [8039] [8040] …
WINDOW 8076 7 months westram: - moved basic file related functions from ARBDB to CORE
XML 7803 9 months westram: merge from dev [7716] [7732] [7733] [7734] [7735] * script to add+remove …
XML_IMPORT 7811 9 months westram: merge from dev [7748] [7749] [7750] * comments (C->C++ style) * fixed …
!BRANCH_STATE 2.3 KB 8105 7 months westram: - updated
arb_CHANGES.txt 10.4 KB 6774 21 months westram: - merged changelog from stable (all changes are already in trunk)
arb_DEBUG.txt 1.2 KB 578 10 years westram: *** empty log message ***
arb_install.sh 14.3 KB 6350 2 years westram: - accept arb.tgz as file (not only as link). Needed if you install ARB …
arb_INSTALL.txt 3.8 KB 8013 8 months eissler: Added Boost header only libraries not present in Boost 1.40 Added current …
arb_LICENSE.txt 12.8 KB 7895 9 months westram: * added arb_rnacma (correlated mutation analysis) written by Breno Faria …
arb_OS_X.txt 5.5 KB 6214 3 years westram: - updated OS_X info (thx to Matt)
arb_OS_X_MacPorts.txt 370 bytes 6288 2 years westram: * include ALL arb_*.txt into release tarball * renamed arb_README_gcc.txt …
arb_README.txt 6.2 KB 6211 3 years westram: * merged [6210] from stable
arb_UBUNTU.txt 1.3 KB 8013 8 months eissler: Added Boost header only libraries not present in Boost 1.40 Added current …
arbsrc_README.txt 210 bytes 6288 2 years westram: * include ALL arb_*.txt into release tarball * renamed arb_README_gcc.txt …
arbsrc_README_gcc.txt 2.1 KB 7331 14 months westram: - tested and added gcc 4.5.2
config.makefile.template 1.5 KB 8235 6 months eissler: PTPan: Improved hardware detection by using hwloc-library (optional)
demo.arb 78.9 KB 7664 11 months westram: * merge from dev [7509] [7510] [7511] [7514] [7517] [7520] [7524] [7527] …
Doxyfile 62.2 KB 6864 20 months westram: * doxygen (merges [6852] [6854] [6857] from refactor) - workaround …
Makefile 57.1 KB 8235 6 months eissler: PTPan: Improved hardware detection by using hwloc-library (optional)
README 0.7 KB 5390 4 years westram: - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    LIBLINK
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
    *.bak
    arb_time.log
    latest.patch
    patches.arb
    makeloc.here
    interdiff.patch
    white.patch
    latest_iwhite.patch
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