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Last change
on this file was
19708,
checked in by westram, 3 months ago
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- update doc+gui:
- avoid terms "ARB_NT" (=former name of main arb window), "ARB_NTREE" and similar
- instead talk about "ARB main window"
- correct refs to 'ARB/Probes/PT_SERVER Admin'.
- update 'What are marked species?'.
- update protection level documentation (parts already done with previous commit).
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File size:
784 bytes
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| 1 | # main topics: |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | # sub topics: |
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| 6 | #SUB subtopic.hlp |
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| 7 | |
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| 8 | # format described in ../help.readme |
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| 9 | |
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| 10 | |
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| 11 | TITLE Strength of base pairings |
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| 12 | |
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| 13 | OCCURRENCE ARB/Probes/Design Probes/EXPERT |
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| 14 | ARB/Probes/Match Probes/EXPERT |
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| 15 | |
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| 16 | DESCRIPTION Allows to adjust values indicating the relative strengths of |
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| 17 | base (mis) pairings. These values are used by the PTSERVER for |
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| 18 | the ranking of potential probe target sites. |
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| 19 | |
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| 20 | Strength of base pairings: |
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| 21 | |
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| 22 | Type the values to the corresponding subwindows of the |
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| 23 | 'Relative Strength of Base Pairings' matrix. |
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| 24 | |
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| 25 | NOTES The bond matrix and the 'Threshold for Splitting' are shared |
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| 26 | between both expert windows (design + match). |
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| 27 | |
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| 28 | EXAMPLES None |
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| 29 | |
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| 30 | WARNINGS None |
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| 31 | |
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| 32 | BUGS No bugs known |
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