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Last change
on this file was
19708,
checked in by westram, 3 months ago
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- update doc+gui:
- avoid terms "ARB_NT" (=former name of main arb window), "ARB_NTREE" and similar
- instead talk about "ARB main window"
- correct refs to 'ARB/Probes/PT_SERVER Admin'.
- update 'What are marked species?'.
- update protection level documentation (parts already done with previous commit).
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File size:
1.3 KB
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| 1 | # main topics: |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | # sub topics: |
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| 6 | #SUB subtopic.hlp |
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| 7 | |
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| 8 | # format described in ../help.readme |
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| 9 | |
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| 10 | |
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| 11 | TITLE Sort tree by other tree |
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| 12 | |
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| 13 | OCCURRENCE ARB/Tree/Beautify tree/By other tree |
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| 14 | |
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| 15 | DESCRIPTION Works similar to LINK{resorttree.hlp}, but here branches are rearranged |
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| 16 | according to the mean position of their leafs in another given tree. |
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| 17 | |
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| 18 | Select the tree you want to use as reference for ordering, |
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| 19 | then click 'Sort according to source tree' to apply the order to |
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| 20 | the currently displayed tree (target tree). |
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| 21 | |
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| 22 | NOTES This also works fine when the source tree DOES NOT contain all species |
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| 23 | of the target tree. Wherever the source tree does not define any ordering, |
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| 24 | the order of the target tree is kept. |
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| 25 | |
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| 26 | This function is e.g. useful after you have added some species to a (copy of a) |
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| 27 | tree and then have optimized the tree: now you may want to sort the copied tree |
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| 28 | according to the original tree. That reduces the unwanted re-ordering caused by |
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| 29 | tree-optimization, without affecting the topology. |
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| 30 | |
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| 31 | If you call the function several times with different source trees, the last |
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| 32 | call will be most dominant. Ordering effects of foregoing calls will |
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| 33 | remain in tree-regions uncovered by source-trees used in subsequent calls. |
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| 34 | |
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| 35 | EXAMPLES None |
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| 36 | |
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| 37 | WARNINGS None |
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| 38 | |
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| 39 | BUGS No bugs known |
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