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source: branches/stable/EDIT4/ED4_text_terminals.cxx

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Last change on this file was 18352, checked in by westram, 4 years ago
full update from child 'fix' into 'trunk' adds: log:branches/fix@18339:18351
Property svn:eol-style set to `native` Property svn:keywords set to `Author Date Id Revision`
File size: 25.8 KB

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1	// =============================================================== //
2	// //
3	// File : ED4_text_terminals.cxx //
4	// Purpose : //
5	// //
6	// Institute of Microbiology (Technical University Munich) //
7	// http://www.arb-home.de/ //
8	// //
9	// =============================================================== //
10
11	#include <ed4_extern.hxx>
12
13	#include "ed4_class.hxx"
14	#include "ed4_awars.hxx"
15	#include "ed4_edit_string.hxx"
16	#include "ed4_block.hxx"
17	#include "ed4_nds.hxx"
18	#include "ed4_visualizeSAI.hxx"
19	#include "ed4_ProteinViewer.hxx"
20	#include "ed4_protein_2nd_structure.hxx"
21	#include "ed4_seq_colors.hxx"
22
23	#include <aw_preset.hxx>
24	#include <aw_awar.hxx>
25
26	#include <AW_helix.hxx>
27	#include <aw_msg.hxx>
28	#include <aw_root.hxx>
29
30	#include <st_window.hxx>
31	#include <arbdbt.h>
32
33	#include <iostream>
34
35	inline void ensure_buffer(char*& buffer, size_t& buffer_size, size_t needed) {
36	if (needed>buffer_size) {
37	delete [] buffer;
38	buffer_size = needed+10;
39	buffer = new char[buffer_size];
40
41	memset(buffer, ' ', buffer_size-1);
42	buffer[buffer_size-1] = 0;
43	}
44	}
45
46	void ED4_consensus_sequence_terminal::draw() {
47	static char *buffer = NULp;
48	static size_t buffer_size = 0;
49
50	AW_pos x, y;
51	calc_world_coords(&x, &y);
52	current_ed4w()->world_to_win_coords(&x, &y);
53
54	PosRange index_range = calc_update_interval();
55	if (index_range.is_empty()) return; // nothing to draw
56
57	AW_pos text_x = x + CHARACTEROFFSET; // don't change
58	AW_pos text_y = y + SEQ_TERM_TEXT_YOFFSET;
59
60	buffer_size = 0;
61
62	if (index_range.is_unlimited()) {
63	e4_assert(MAXSEQUENCECHARACTERLENGTH == 0); // allow missing update interval when no seqdata is present (yet)
64
65	const char *no_data = "No consensus data";
66	size_t len = strlen(no_data);
67	ensure_buffer(buffer, buffer_size, len+1);
68	memcpy(buffer, no_data, len);
69
70	index_range = ExplicitRange(index_range, buffer_size-1);
71	}
72	else {
73	const ED4_remap *rm = ED4_ROOT->root_group_man->remap();
74
75	index_range = rm->clip_screen_range(index_range);
76	if (index_range.is_empty()) return; // nothing to draw
77
78	ExplicitRange seq_range = ExplicitRange(rm->screen_to_sequence(index_range), MAXSEQUENCECHARACTERLENGTH);
79	index_range = rm->sequence_to_screen(seq_range);
80
81	char *cons = NULp;
82	if (!seq_range.is_empty()) {
83	cons = GB_give_buffer(seq_range.size()+1);
84	get_char_table().build_consensus_string_to(cons, seq_range, ED4_ROOT->get_consensus_params());
85	}
86
87	ensure_buffer(buffer, buffer_size, index_range.end()+1);
88
89	ED4_reference *ref = ED4_ROOT->reference;
90	bool only_show_diff = ref->only_show_diff_for(this);
91
92	for (int pos = index_range.start(); pos <= index_range.end(); ++pos) {
93	int seq_pos = rm->screen_to_sequence(pos);
94	if (seq_pos<0) {
95	buffer[pos] = ' ';
96	}
97	else {
98	char c = cons[seq_pos-seq_range.start()];
99	buffer[pos] = only_show_diff ? ref->convert(c, seq_pos) : c;
100	e4_assert(buffer[pos]);
101	}
102	}
103	}
104
105	if (buffer_size) {
106	current_device()->set_vertical_font_overlap(true);
107	current_device()->text(ED4_G_SEQUENCES, SizedCstr(buffer, index_range.end()+1), text_x, text_y, 0, AW_SCREEN);
108	current_device()->set_vertical_font_overlap(false);
109	}
110	}
111
112	struct ShowHelix_cd {
113	AW_helix *helix;
114	int real_sequence_length;
115	};
116
117	static bool ED4_show_helix_on_device(AW_device device, int gc, const char helixBuffer, size_t helixStart, size_t helixLen, const AW::Position& pos, AW_CL cduser) {
118	ShowHelix_cd cd = (ShowHelix_cd)cduser;
119	AW_helix *helix = cd->helix;
120	const ED4_remap *rm = ED4_ROOT->root_group_man->remap();
121	char *buffer = GB_give_buffer(helixLen+1);
122	long i, j, k;
123
124	helixLen = std::min(rm->get_max_screen_pos(), helixLen);
125
126	for (k=0; size_t(k)<helixLen; k++) {
127	i = rm->screen_to_sequence(k+helixStart);
128
129	BI_PAIR_TYPE pairType = helix->pairtype(i);
130	if (pairType == HELIX_NONE) {
131	buffer[k] = ' ';
132	}
133	else {
134	j = helix->opposite_position(i);
135	char pairchar = j<cd->real_sequence_length ? helixBuffer[j] : '.';
136	buffer[k] = helix->get_symbol(helixBuffer[i], pairchar, pairType);
137	}
138	}
139	buffer[helixLen] = 0;
140	return device->text(gc, buffer, pos);
141	}
142
143	static bool ED4_show_protein_match_on_device(AW_device device, int gc, const char pfoldBuffer, size_t pfoldStart, size_t pfoldLen, const AW::Position& pos, AW_CL cl_protstruct) {
144	/*! \brief Calls ED4_pfold_calculate_secstruct_match() for the visible area in the
145	* editor to compute the protein secondary structure match and outputs the
146	* result to the device.
147	* \param[in] pfoldBuffer The protein structure (primary or secondary) that should be compared to \a cl_protstruct
148	* \param[in] cl_protstruct The reference protein secondary structure SAI
149	*/
150
151	GB_ERROR error = NULp;
152	// TODO: proper use of ED4_remap?
153	const ED4_remap *rm = ED4_ROOT->root_group_man->remap();
154	char *buffer = GB_give_buffer(pfoldLen+1);
155	if (!buffer) {
156	error = GB_export_error("Out of memory.");
157	}
158	else {
159	error = ED4_pfold_calculate_secstruct_match((const unsigned char *)cl_protstruct,
160	(const unsigned char *)pfoldBuffer,
161	rm->screen_to_sequence(pfoldStart),
162	rm->screen_to_sequence(pfoldStart + pfoldLen),
163	buffer,
164	(PFOLD_MATCH_METHOD)ED4_ROOT->aw_root->awar(PFOLD_AWAR_MATCH_METHOD)->read_int());
165	}
166	if (error) {
167	aw_message(error);
168	return false;
169	}
170
171	buffer[pfoldLen] = 0;
172	return device->text(gc, buffer, pos);
173	}
174
175	void ED4_orf_terminal::draw() {
176	// draw aminoacid ORFs below the DNA sequence
177
178	static int color_is_used[ED4_G_DRAG];
179	static char **colored_strings = NULp;
180	static int len_of_colored_strings = 0;
181
182	AW_device *device = current_device();
183
184	// @@@ DRY calculation of index-range to-be-updated (done in several draw functions)
185	AW_pos world_x, world_y;
186	calc_world_coords(&world_x, &world_y);
187	current_ed4w()->world_to_win_coords(&world_x, &world_y);
188
189	AW_pos text_x = world_x + CHARACTEROFFSET; // don't change
190	AW_pos text_y = world_y + SEQ_TERM_TEXT_YOFFSET;
191
192	const ED4_remap *rm = ED4_ROOT->root_group_man->remap();
193
194	ExplicitRange index_range = rm->clip_screen_range(calc_update_interval());
195	{
196	int max_seq_len = aaSeqLen;
197	int max_seq_pos = rm->sequence_to_screen(max_seq_len-1);
198	index_range = ExplicitRange(PosRange(index_range), max_seq_pos);
199	}
200
201	if (index_range.is_empty()) {
202	// @@@ looks wrong (index_range is empty depending on updated area!)
203	// compare to .@DRAW_WRONG_MESSAGE
204
205	const char *no_data = "No sequence data";
206
207	device->text(ED4_G_STANDARD, no_data, text_x, text_y, 0, AW_SCREEN);
208	return; // nothing to draw
209	}
210
211	if (index_range.end() >= len_of_colored_strings) {
212	len_of_colored_strings = index_range.end() + 256;
213	if (!colored_strings) ARB_calloc(colored_strings, ED4_G_DRAG);
214
215	for (int i=0; i<ED4_G_DRAG; i++) {
216	freeset(colored_strings[i], ARB_alloc<char>(len_of_colored_strings+1));
217	memset(colored_strings[i], ' ', len_of_colored_strings);
218	colored_strings[i][len_of_colored_strings] = 0;
219	}
220	}
221
222	int seq_end = rm->screen_to_sequence(index_range.end());
223
224	// mark all strings as unused
225	memset(color_is_used, 0, sizeof(color_is_used));
226
227	int iDisplayMode = ED4_ROOT->aw_root->awar(AWAR_PROTVIEW_DISPLAY_OPTIONS)->read_int();
228	{
229	const unsigned char aaSequence_u = (const unsigned char )aaSequence;
230	const unsigned char aaColor_u = (const unsigned char )aaColor;
231
232	if (iDisplayMode == PV_AA_NAME \|\| iDisplayMode == PV_AA_CODE) {
233	// transform strings, compress if needed
234	ED4_reference *ref = ED4_ROOT->reference;
235	ref->expand_to_length(seq_end);
236
237	char *char_2_char = ED4_ROOT->sequence_colors->char_2_char_aa;
238	char *char_2_gc = ED4_ROOT->sequence_colors->char_2_gc_aa;
239
240	if (iDisplayMode == PV_AA_NAME) {
241	for (int scr_pos=index_range.start(); scr_pos <= index_range.end(); scr_pos++) {
242	int seq_pos = rm->screen_to_sequence(scr_pos);
243	unsigned char c = aaSequence_u[seq_pos];
244	unsigned char cc = aaColor_u[seq_pos];
245	int gc = char_2_gc[safeCharIndex(cc)];
246
247	color_is_used[gc] = scr_pos+1;
248	colored_strings[gc][scr_pos] = char_2_char[safeCharIndex(c)];
249	}
250	}
251	else {
252	for (int scr_pos=index_range.start(); scr_pos <= index_range.end(); scr_pos++) {
253	int seq_pos = rm->screen_to_sequence(scr_pos);
254	char c = aaSequence_u[seq_pos];
255	int gc = char_2_gc[safeCharIndex(c)];
256
257	color_is_used[gc] = scr_pos+1;
258	colored_strings[gc][scr_pos] = char_2_char[safeCharIndex(c)];
259	}
260	}
261	}
262
263	// paint background
264	if ((iDisplayMode == PV_AA_CODE) \|\| (iDisplayMode == PV_AA_BOX)) {
265	AW_pos width = ED4_ROOT->font_group.get_width(ED4_G_SEQUENCES);
266	const int real_left = index_range.start();
267	const int real_right = index_range.end();
268	AW_pos x2 = text_x + width*real_left;
269	AW_pos y1 = world_y;
270	AW_pos y2 = text_y+1;
271	AW_pos height = y2-y1+1;
272	int color = ED4_G_STANDARD;
273	char *char_2_gc_aa = ED4_ROOT->sequence_colors->char_2_gc_aa;
274
275	for (int i = real_left; i <= real_right; i++, x2 += width) {
276	int new_pos = rm->screen_to_sequence(i); // getting the real position of the base in the sequence
277	char base = aaSequence_u[new_pos];
278
279	if (isupper(base) \|\| (base=='*')) {
280	AW_pos x1 = x2-width; // store current x pos to x1
281	x2 += width*2; // add 2 char width to x2
282	i += 2; // jump two pos
283
284	int gcChar = char_2_gc_aa[safeCharIndex(base)];
285	if ((gcChar>=0) && (gcChar<ED4_G_DRAG)) {
286	color = gcChar;
287	if (iDisplayMode == PV_AA_BOX) {
288	device->box(color, AW::FillStyle::SOLID, x1, y1, width*3, height);
289	}
290	else {
291	double rad_x = width*1.5;
292	double rad_y = height*0.7;
293	double center_x = x1+rad_x;
294	const int DRAW_DEG = 62;
295
296	device->arc(ED4_G_SEQUENCES, AW::FillStyle::EMPTY, center_x, y1, rad_x, rad_y, 0, DRAW_DEG);
297	device->arc(ED4_G_SEQUENCES, AW::FillStyle::EMPTY, center_x, y1, rad_x, rad_y, 180, -DRAW_DEG);
298	}
299	}
300	}
301	}
302	}
303	}
304
305	if ((iDisplayMode == PV_AA_NAME) \|\| (iDisplayMode == PV_AA_CODE)) {
306	device->set_vertical_font_overlap(true);
307	// output strings
308	for (int gc = 0; gc < ED4_G_DRAG; gc++) {
309	if (color_is_used[gc] && (int)strlen(colored_strings[gc]) >= color_is_used[gc]) {
310	device->text(gc, SizedCstr(colored_strings[gc], color_is_used[gc]), text_x, text_y, 0, AW_SCREEN);
311	memset(colored_strings[gc] + index_range.start(), ' ', index_range.size()); // clear string
312	}
313	}
314	device->set_vertical_font_overlap(false);
315	}
316	}
317
318	void ED4_sequence_terminal::draw() {
319	static int color_is_used[ED4_G_DRAG];
320	static char **colored_strings = NULp;
321	static int len_of_colored_strings = 0;
322
323	#if defined(TRACE_REFRESH)
324	fprintf(stderr, "ED4_sequence_terminal::draw for id='%s'\n", id); fflush(stderr);
325	#endif
326
327	AW_device *device = current_device();
328
329	int max_seq_len;
330	resolve_pointer_to_char_pntr(&max_seq_len);
331	e4_assert(max_seq_len>0);
332
333	AW_pos world_x, world_y;
334	calc_world_coords(&world_x, &world_y);
335	current_ed4w()->world_to_win_coords(&world_x, &world_y);
336
337	AW_pos text_x = world_x + CHARACTEROFFSET; // don't change
338	AW_pos text_y = world_y + SEQ_TERM_TEXT_YOFFSET;
339
340	const ED4_remap *rm = ED4_ROOT->root_group_man->remap();
341
342	ExplicitRange index_range = rm->clip_screen_range(calc_update_interval());
343	if (index_range.is_empty()) return; // nothing to draw
344
345	int left = index_range.start(); // @@@ do similar to ED4_orf_terminal::draw here
346	int right = index_range.end();
347
348	{
349	int max_seq_pos = rm->sequence_to_screen(max_seq_len-1);
350
351	if (right>max_seq_len) right = max_seq_pos;
352	if (left>right) {
353	// @@@ may be correct here
354	// compare to .@DRAW_WRONG_MESSAGE
355
356	const char *no_data = "No sequence data";
357
358	device->text(ED4_G_STANDARD, no_data, text_x, text_y, 0, AW_SCREEN);
359	return; // nothing to draw
360	}
361	}
362
363	if (right >= len_of_colored_strings) {
364	len_of_colored_strings = right + 256;
365	if (!colored_strings) ARB_calloc(colored_strings, ED4_G_DRAG);
366
367	for (int i=0; i<ED4_G_DRAG; i++) {
368	freeset(colored_strings[i], (char )malloc(sizeof(char) (len_of_colored_strings+1)));
369	memset(colored_strings[i], ' ', len_of_colored_strings);
370	colored_strings[i][len_of_colored_strings] = 0;
371	}
372	}
373
374	int seq_start = rm->screen_to_sequence(left); // real start of sequence
375	int seq_end = rm->screen_to_sequence(right);
376
377	// mark all strings as unused
378	memset(color_is_used, 0, sizeof(color_is_used));
379
380	// transform strings, compress if needed
381	{
382	ED4_reference *ref = ED4_ROOT->reference;
383	unsigned char db_pointer = (unsigned char )resolve_pointer_to_string_copy();
384
385	ref->expand_to_length(seq_end);
386
387	GB_alignment_type aliType = GetAliType();
388	char *char_2_char = (aliType && (aliType==GB_AT_AA)) ? ED4_ROOT->sequence_colors->char_2_char_aa : ED4_ROOT->sequence_colors->char_2_char;
389	char *char_2_gc = (aliType && (aliType==GB_AT_AA)) ? ED4_ROOT->sequence_colors->char_2_gc_aa : ED4_ROOT->sequence_colors->char_2_gc;
390
391	bool only_show_diff = ref->only_show_diff_for(this);
392	for (int scr_pos=left; scr_pos <= right; scr_pos++) {
393	int seq_pos = rm->screen_to_sequence(scr_pos);
394	int c = db_pointer[seq_pos];
395	int gc = char_2_gc[c];
396
397	color_is_used[gc] = scr_pos+1;
398	colored_strings[gc][scr_pos] = char_2_char[only_show_diff ? ref->convert(c, seq_pos) : c];
399	}
400
401	free(db_pointer);
402	}
403
404	// Set background
405
406	{
407	GB_transaction ta(ED4_ROOT->get_gb_main());
408	ST_ML_Color *statColors = NULp;
409	char *searchColors = results().buildColorString(this, seq_start, seq_end); // defined in ED4_SearchResults class : ED4_search.cxx
410	ED4_species_manager *spec_man = get_parent(LEV_SPECIES)->to_species_manager();
411	int color_group = AW_color_groups_active() ? GBT_get_color_group(spec_man->get_species_pointer()) : 0;
412
413	PosRange selection;
414	int is_selected = ED4_get_selected_range(this, selection);
415	int is_marked = GB_read_flag(spec_man->get_species_pointer());
416
417	if (species_name &&
418	ED4_ROOT->column_stat_activated &&
419	(st_ml_node \|\| (st_ml_node = STAT_find_node_by_name(ED4_ROOT->st_ml, this->species_name))))
420	{
421	statColors = STAT_get_color_string(ED4_ROOT->st_ml, NULp, st_ml_node, seq_start, seq_end);
422	}
423
424	const char *saiColors = NULp;
425
426	if (species_name &&
427	ED4_ROOT->visualizeSAI &&
428	spec_man->get_type() != ED4_SP_SAI &&
429	(is_marked \|\| ED4_ROOT->visualizeSAI_allSpecies))
430	{
431	saiColors = ED4_getSaiColorString(ED4_ROOT->aw_root, seq_start, seq_end);
432	}
433
434	if (statColors \|\| searchColors \|\| is_marked \|\| is_selected \|\| color_group \|\| saiColors) {
435	int i;
436	AW_pos width = ED4_ROOT->font_group.get_width(ED4_G_SEQUENCES);
437	int real_left = left;
438	int real_right = right;
439	AW_pos x2 = text_x + width*real_left;
440	AW_pos old_x = x2;
441	AW_pos y1 = world_y;
442	AW_pos y2 = text_y+1;
443	AW_pos height = y2-y1+1;
444	int old_color = ED4_G_STANDARD;
445	int color = ED4_G_STANDARD;
446
447	if (is_selected && selection.is_unlimited()) {
448	selection = ExplicitRange(selection, rm->screen_to_sequence(real_right));
449	}
450
451	for (i = real_left; i <= real_right; i++, x2 += width) {
452	int new_pos = rm->screen_to_sequence(i); // getting the real position of the base in the sequence
453
454	// Note: if you change background color priorities,
455	// please update help in ../HELP_SOURCE/oldhelp/e4_background_priority.hlp@COLOR_PRIORITY
456
457	if (searchColors && searchColors[new_pos]) {
458	color = searchColors[new_pos];
459	}
460	else if (is_selected && selection.contains(new_pos)) {
461	color = ED4_G_SELECTED;
462	}
463	else if (statColors) {
464	color = statColors[new_pos] + ED4_G_CBACK_0;
465	if (color > ED4_G_CBACK_9) color = ED4_G_CBACK_9;
466	}
467	else if (saiColors) {
468	color = saiColors[new_pos];
469	if (color < ED4_G_CBACK_0 \|\| color > ED4_G_CBACK_9) color = ED4_G_STANDARD;
470	}
471	else if (is_marked) {
472	color = ED4_G_MARKED;
473	}
474	else if (color_group) {
475	color = ED4_G_FIRST_COLOR_GROUP+color_group-1;
476	}
477	else {
478	color = ED4_G_STANDARD;
479	}
480
481	if (color != old_color) { // draw till oldcolor
482	if (x2>old_x) {
483	if (old_color!=ED4_G_STANDARD) {
484	device->box(old_color, AW::FillStyle::SOLID, old_x, y1, x2-old_x, height); // paints the search pattern background
485	}
486	}
487	old_x = x2;
488	old_color = color;
489	}
490	}
491
492	if (x2>old_x) {
493	if (color!=ED4_G_STANDARD) {
494	device->box(color, AW::FillStyle::SOLID, old_x, y1, x2-old_x, height);
495	}
496	}
497	}
498	}
499
500	device->set_vertical_font_overlap(true);
501
502	if (shall_display_secstruct_info) {
503	if (ED4_ROOT->helix->is_enabled()) {
504	// output helix
505	int db_len;
506	char *db_pointer = resolve_pointer_to_string_copy(&db_len);
507
508	e4_assert(size_t(db_len) == ED4_ROOT->helix->size());
509	ShowHelix_cd cd = { ED4_ROOT->helix, max_seq_len };
510	device->text_overlay(ED4_G_HELIX,
511	SizedCstr(db_pointer, db_len),
512	AW::Position(text_x, text_y + ED4_ROOT->helix_spacing), 0.0, AW_ALL_DEVICES_UNSCALED,
513	ED4_show_helix_on_device, (AW_CL)&cd);
514	free(db_pointer);
515	}
516
517	if (ED4_ROOT->protstruct) {
518	// output protein structure match
519	ED4_species_manager *spec_man = get_parent(LEV_SPECIES)->to_species_manager();
520	if (spec_man->get_type() != ED4_SP_SAI && ED4_ROOT->aw_root->awar(PFOLD_AWAR_ENABLE)->read_int()) { // should do a remap
521	int db_len;
522	char *protstruct = resolve_pointer_to_string_copy(&db_len);
523
524	if (protstruct) {
525	device->text_overlay(ED4_G_HELIX,
526	SizedCstr(protstruct, db_len),
527	AW::Position(text_x, text_y + ED4_ROOT->helix_spacing), 0.0, AW_ALL_DEVICES_UNSCALED,
528	ED4_show_protein_match_on_device, (AW_CL)ED4_ROOT->protstruct);
529	free(protstruct);
530	}
531	}
532	}
533	}
534	// output strings
535	{
536	int gc;
537	for (gc = 0; gc < ED4_G_DRAG; gc++) {
538	if (!color_is_used[gc]) continue;
539	device->text(gc, SizedCstr(colored_strings[gc], color_is_used[gc]), text_x, text_y, 0, AW_SCREEN);
540	memset(colored_strings[gc] + left, ' ', right-left+1); // clear string
541	}
542	}
543
544	device->set_vertical_font_overlap(false);
545	}
546
547
548	void ED4_sequence_info_terminal::draw() {
549	AW_pos x, y;
550	calc_world_coords(&x, &y);
551	current_ed4w()->world_to_win_coords(&x, &y);
552
553	AW_pos text_x = x + CHARACTEROFFSET; // don't change
554	AW_pos text_y = y+INFO_TERM_TEXT_YOFFSET;
555
556	char buffer[10];
557	GBDATA *gbdata = data();
558
559	if (gbdata) {
560	GB_push_transaction(gbdata);
561	buffer[0] = '0' + GB_read_security_write(gbdata);
562	GB_pop_transaction(gbdata);
563	}
564	else {
565	buffer[0] = ' ';
566	}
567	strncpy(&buffer[1], this->id, 8);
568	buffer[9] = 0;
569
570	if (containing_species_manager()->is_selected()) {
571	current_device()->box(ED4_G_SELECTED, AW::FillStyle::SOLID, x, y, extension.size[WIDTH], text_y-y+1);
572	}
573
574	current_device()->set_vertical_font_overlap(true);
575	current_device()->text(ED4_G_STANDARD, buffer, text_x, text_y, 0, AW_SCREEN);
576	current_device()->set_vertical_font_overlap(false);
577	}
578
579	// ---------------------------
580	// ED4_text_terminal
581
582	void ED4_text_terminal::draw() {
583	AW_pos x, y;
584	calc_world_coords(&x, &y);
585	current_ed4w()->world_to_win_coords(&x, &y);
586
587	AW_pos text_x = x + CHARACTEROFFSET; // don't change
588	AW_pos text_y = y + INFO_TERM_TEXT_YOFFSET;
589
590	current_device()->set_vertical_font_overlap(true);
591
592	if (is_species_name_terminal()) { // @@@ handle by virtual method (eg. draw_text())
593	GB_CSTR real_name = to_species_name_terminal()->get_displayed_text();
594	int width_of_char;
595	int height_of_char = -1;
596	bool paint_box = inside_species_seq_manager();
597	bool is_marked = false;
598
599	if (paint_box) {
600	ED4_species_manager *species_man = get_parent(LEV_SPECIES)->to_species_manager();
601	GBDATA *gbd = species_man->get_species_pointer();
602
603	if (gbd) {
604	GB_transaction ta(gbd);
605	is_marked = GB_read_flag(gbd);
606	}
607
608	width_of_char = ED4_ROOT->font_group.get_width(ED4_G_STANDARD);
609	height_of_char = ED4_ROOT->font_group.get_height(ED4_G_STANDARD);
610	#define MIN_MARK_BOX_SIZE 8
611	if (width_of_char<MIN_MARK_BOX_SIZE) width_of_char = MIN_MARK_BOX_SIZE;
612	if (height_of_char<MIN_MARK_BOX_SIZE) height_of_char = MIN_MARK_BOX_SIZE;
613	#undef MIN_MARK_BOX_SIZE
614	}
615	else {
616	width_of_char = 0;
617	}
618
619	if (containing_species_manager()->is_selected()) {
620	current_device()->box(ED4_G_SELECTED, AW::FillStyle::SOLID, x, y, extension.size[WIDTH], text_y-y+1);
621	}
622	current_device()->text(ED4_G_STANDARD, real_name, text_x+width_of_char, text_y, 0, AW_SCREEN);
623
624	if (paint_box) {
625	int xsize = (width_of_char*6)/10;
626	int ysize = (height_of_char*6)/10;
627	int xoff = xsize>>1;
628	int yoff = 0;
629	int bx = int(text_x+xoff);
630	int by = int(text_y-(yoff+ysize));
631
632	current_device()->box(ED4_G_STANDARD, AW::FillStyle::SOLID, bx, by, xsize, ysize);
633	if (!is_marked && xsize>2 && ysize>2) {
634	current_device()->clear_part(bx+1, by+1, xsize-2, ysize-2, AW_ALL_DEVICES);
635	}
636	}
637	}
638	else if (is_flag_header_terminal()) { // @@@ handle by virtual method (eg. draw_text())
639	ED4_flag_header_terminal *header_term = to_flag_header_terminal();
640	const char *header_text = header_term->get_displayed_text();
641
642	text_y += (SEQ_TERM_TEXT_YOFFSET-INFO_TERM_TEXT_YOFFSET); // @@@ wrong vertical shift? (change fontsize to examine)
643	current_device()->text(ED4_G_FLAG_INFO, SizedCstr(header_text, header_term->get_length()), text_x, text_y, 0, AW_SCREEN);
644	}
645	else {
646	e4_assert(is_pure_text_terminal()); // unhandled terminal type that does not overload draw()
647
648	char *db_pointer = resolve_pointer_to_string_copy();
649
650	text_y += (SEQ_TERM_TEXT_YOFFSET-INFO_TERM_TEXT_YOFFSET);
651	current_device()->text(ED4_G_SEQUENCES, db_pointer, text_x, text_y, 0, AW_SCREEN);
652
653	free(db_pointer);
654	}
655	current_device()->set_vertical_font_overlap(false);
656	}
657
658	ED4_text_terminal::ED4_text_terminal(const ED4_objspec& spec_, GB_CSTR temp_id, AW_pos width, AW_pos height, ED4_manager *temp_parent) :
659	ED4_terminal(spec_, temp_id, width, height, temp_parent)
660	{}
661

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