source: branches/stable/lib/sellists/srt_aci.sellst

Last change on this file was 16870, checked in by westram, 6 years ago
  • cosmetics: align 1st column of predefined srt/aci selection lists
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.3 KB
Line 
1ID            ! (none),
2T=U           ! Replace all T's by U's,                                 :T=U:t=u
3A. BBB        ! Replace first word by its first letter plus '.',        :?* *=?1. *2
4AA. BBB       ! Replace first word by its first two letters plus '.',   :??* *=?1?2. *2
5SHOW a-b      ! Show position 125 - 150,                                |mid(125,150)
6HEAD 20       ! Show position 0 - 20,                                   |head(20)
7TAIL 20       ! Show 20 last positions,                                 |tail(20)
8CNT(A)        ! Count all 'A's,                                         |count(aA)
9CNT(ACGT)     ! Count all 'ACGTU',                                      |count("ACGTU")
10CNT ambi      ! Count all small letters + ambiguous codes + '.',        |len("-ACGTU")
11CNT ambi2     ! Count ambiguous c. + 'acgtu.' in range [100..len-100],  |mid(100,-99)|len("-ACGTU")
12G+C           ! G+C content,                                            |count("gcGC");count("agctuAGCTU")|per_cent
13CHECKALL      ! Overall Checksum,                                       |checksum
14CHECKBAS      ! Checksum (no gaps),                                     |checksum(exclude=.-n;touppper)
15DIFFECOLI     ! Difference to ecoli sequence,                           |diff(SAI=ECOLI)
16TAXONOMY      ! Taxonomy of species,                                    |taxonomy(1)
Note: See TracBrowser for help on using the repository browser.