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source: branches/tree/MERGE/MG_gene_species.cxx

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Last change on this file was 18159, checked in by westram, 5 years ago
full update from child 'fix' into 'trunk' fix item name accessors (`GBT_get_name` + `GBT_get_name_or_description`) add `null2empty` adds: log:branches/fix@18140:18158
Property svn:eol-style set to `native` Property svn:keywords set to `Author Date Id Revision`
File size: 23.4 KB

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1	// ==================================================================== //
2	// //
3	// File : MG_gene_species.cxx //
4	// Purpose : Transfer fields from organism and gene when //
5	// transferring gene species //
6	// //
7	// //
8	// Coded by Ralf Westram (coder@reallysoft.de) in July 2002 //
9	// Copyright Department of Microbiology (Technical University Munich) //
10	// //
11	// Visit our web site at: http://www.arb-home.de/ //
12	// //
13	// //
14	// ==================================================================== //
15
16	#include "merge.hxx"
17
18	#include <awt_config_manager.hxx>
19	#include <aw_awar.hxx>
20	#include <aw_root.hxx>
21	#include <aw_msg.hxx>
22	#include <aw_select.hxx>
23	#include <arbdbt.h>
24	#include <arb_str.h>
25	#include <gb_aci.h>
26
27	#define AWAR_MERGE_GENE_SPECIES_SAV AWAR_MERGE_SAV "gene_species/"
28	#define AWAR_MERGE_GENE_SPECIES_TMP AWAR_MERGE_TMP "gene_species/"
29
30	// for input :
31
32	#define AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD AWAR_MERGE_GENE_SPECIES_TMP "current"
33	#define AWAR_MERGE_GENE_SPECIES_DEST AWAR_MERGE_GENE_SPECIES_TMP "dest"
34	#define AWAR_MERGE_GENE_SPECIES_SOURCE AWAR_MERGE_GENE_SPECIES_TMP "source"
35	#define AWAR_MERGE_GENE_SPECIES_METHOD AWAR_MERGE_GENE_SPECIES_TMP "method"
36	#define AWAR_MERGE_GENE_SPECIES_ACI AWAR_MERGE_GENE_SPECIES_TMP "aci"
37	#define AWAR_MERGE_GENE_SPECIES_EXAMPLE AWAR_MERGE_GENE_SPECIES_TMP "example"
38	#define AWAR_MERGE_GENE_SPECIES_FIELDS_SAVE AWAR_MERGE_GENE_SPECIES_TMP "save" // only used to save/load config
39
40	// saved awars :
41	#define AWAR_MERGE_GENE_SPECIES_CREATE_FIELDS AWAR_MERGE_GENE_SPECIES_SAV "activated"
42	#define AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS AWAR_MERGE_GENE_SPECIES_SAV "field_defs"
43
44	enum CreationMethod {
45	MG_CREATE_COPY_ORGANISM,
46	MG_CREATE_COPY_GENE,
47	MG_CREATE_USING_ACI_ONLY
48	};
49
50	static AW_default MG_props = NULp; // pointer current applications properties database
51
52	void MG_create_gene_species_awars(AW_root *aw_root, AW_default aw_def) {
53	aw_root->awar_int(AWAR_MERGE_GENE_SPECIES_METHOD, 0, aw_def);
54	aw_root->awar_string(AWAR_MERGE_GENE_SPECIES_ACI, "", aw_def);
55	aw_root->awar_string(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD, "", aw_def);
56	aw_root->awar_string(AWAR_MERGE_GENE_SPECIES_DEST, "", aw_def);
57	aw_root->awar_string(AWAR_MERGE_GENE_SPECIES_EXAMPLE, "", aw_def);
58	aw_root->awar_string(AWAR_MERGE_GENE_SPECIES_SOURCE, "", aw_def);
59
60	aw_root->awar_int(AWAR_MERGE_GENE_SPECIES_CREATE_FIELDS, 0, aw_def);
61	aw_root->awar_string(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS, ";", aw_def);
62	aw_root->awar_string(AWAR_MERGE_GENE_SPECIES_FIELDS_SAVE, "", aw_def);
63
64	MG_props = aw_def;
65	}
66
67	#define BUFSIZE 100
68
69	inline char strcpydest(char dest, const char *src) {
70	// like strcpy, but returns pointer to zero terminator
71	int i = 0;
72	while (src[i]) {
73	dest[i] = src[i];
74	i++;
75	}
76	dest[i] = 0;
77	return dest+i;
78	}
79
80	inline const char field_awar(const char field_name, const char *subfield) {
81	static char buffer[BUFSIZE];
82
83	char *end = strcpydest(strcpydest(buffer, AWAR_MERGE_GENE_SPECIES_SAV"def_"), field_name);
84	*end++ = '/';
85	IF_DEBUG(end=) strcpydest(end, subfield);
86
87	mg_assert((end-buffer)<BUFSIZE);
88
89	return buffer;
90	}
91
92	inline const char current_field_awar(AW_root aw_root, const char *subfield) {
93	static char *cur_field = NULp;
94
95	freeset(cur_field, aw_root->awar(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD)->read_string());
96
97	if (cur_field[0]) return field_awar(cur_field, subfield);
98	return NULp; // no field definition selected
99	}
100
101	static void create_awars_for_field(const char *cur_field) {
102	// Note : MG_current_field_def_changed_cb also creates these awars!
103	AW_root *aw_root = AW_root::SINGLETON;
104	aw_root->awar_string(field_awar(cur_field, "source"), cur_field, MG_props);
105	aw_root->awar_int(field_awar(cur_field, "method"), 1, MG_props);
106	aw_root->awar_string(field_awar(cur_field, "aci"), "", MG_props);
107	}
108
109	static char MG_create_field_content(GBDATA gb_species, CreationMethod method, const char origins_field, const char aci, GB_ERROR& error, GB_HASH *organism_hash) {
110	// does not write to database (only creates the content)
111	mg_assert(GEN_is_pseudo_gene_species(gb_species));
112
113	char *result = NULp;
114	GBDATA *gb_origin = NULp;
115
116	switch (method) {
117	case MG_CREATE_COPY_ORGANISM:
118	gb_origin = GEN_find_origin_organism(gb_species, organism_hash);
119	if (!gb_origin) {
120	error = GBS_global_string("Origin-Organism '%s' not found", GEN_origin_organism(gb_species));
121	}
122	break;
123	case MG_CREATE_COPY_GENE:
124	gb_origin = GEN_find_origin_gene(gb_species, organism_hash);
125	if (!gb_origin) {
126	error = GBS_global_string("Origin-Gene '%s/%s' not found",
127	GEN_origin_organism(gb_species), GEN_origin_gene(gb_species));
128	}
129	break;
130	case MG_CREATE_USING_ACI_ONLY:
131	break;
132	}
133
134	if (gb_origin) { // read source field
135	if (origins_field[0]) {
136	GBDATA *gb_field = GB_entry(gb_origin, origins_field);
137	if (!gb_field) {
138	error = GBS_global_string("Field not found: '%s'", origins_field);
139	}
140	else {
141	result = GB_read_as_string(gb_field);
142	}
143	}
144	else {
145	error = "Specify a 'Source field'";
146	}
147	}
148
149	if (!error) {
150	char *aci_result = NULp;
151
152	GBL_env env(GLOBAL_gb_src, NULp);
153
154	if (method == MG_CREATE_USING_ACI_ONLY) {
155	mg_assert(!result);
156	GBL_call_env callEnv(gb_species, env);
157	aci_result = GB_command_interpreter_in_env("", aci, callEnv);
158	if (!aci_result) error = GB_await_error();
159	}
160	else {
161	if (aci && aci[0]) {
162	GBL_call_env callEnv(gb_origin, env);
163	aci_result = GB_command_interpreter_in_env(null2empty(result), aci, callEnv);
164	if (!aci_result) error = GB_await_error();
165	}
166	}
167
168	if (aci_result) freeset(result, aci_result);
169	}
170
171	if (error) freenull(result);
172
173	mg_assert(result\|\|error);
174	return result;
175	}
176
177	GB_ERROR MG_export_fields(AW_root aw_root, GBDATA gb_src, GBDATA gb_dst, GB_HASH error_suppressor, GB_HASH *source_organism_hash) {
178	// Export fields from pseudo-species' source-organism to exported destination-species
179	// error_suppressor and source_organism_hash may be NULp
180
181	int export_fields = aw_root->awar(AWAR_MERGE_GENE_SPECIES_CREATE_FIELDS)->read_int();
182
183	if (export_fields) { // should fields be exported ?
184	mg_assert(GEN_is_pseudo_gene_species(gb_src));
185
186	char *existing_definitions = aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS)->read_string();
187	char *start = existing_definitions+1;
188
189	mg_assert(existing_definitions[0] == ';');
190
191	GB_ERROR error = NULp;
192	while (!error && start[0]) { // parse existing definitions and add them to selection list
193	char *end = strchr(start, ';');
194	if (!end) end = strchr(start, 0);
195	int len = end-start;
196	if (len<1) break;
197
198	mg_assert(end[0] == ';');
199	end[0] = 0;
200
201	// export one field (start contains destination field name)
202	{
203	create_awars_for_field(start);
204	CreationMethod method = (CreationMethod)aw_root->awar(field_awar(start, "method"))->read_int();
205	char *source = aw_root->awar(field_awar(start, "source"))->read_string();
206	char *aci = aw_root->awar(field_awar(start, "aci"))->read_string();
207
208	char *result = MG_create_field_content(gb_src, method, source, aci, error, source_organism_hash);
209	mg_assert(result \|\| error);
210
211	if (result) {
212	error = GBT_write_string(gb_dst, start, result);
213	free(result);
214	}
215	else {
216	long error_seen = error_suppressor ? GBS_read_hash(error_suppressor, error) : 0;
217	#define MAX_EQUAL_WARNINGS 10
218	if (error_seen >= MAX_EQUAL_WARNINGS) {
219	if (error_seen == MAX_EQUAL_WARNINGS) {
220	aw_message(GBS_global_string("More than %i warnings about '%s' (suppressing)", MAX_EQUAL_WARNINGS, error));
221	}
222	}
223	else {
224	aw_message(GBS_global_string("'%s' when exporting %s (continuing)", error, GBT_get_name_or_description(gb_src)));
225	}
226	if (error_suppressor) {
227	GBS_incr_hash(error_suppressor, error);
228	GBS_optimize_hash(error_suppressor);
229	}
230	error = NULp;
231	}
232
233	free(aci);
234	free(source);
235	}
236
237	start = end+1;
238	}
239
240	aw_message_if(error);
241	free(existing_definitions);
242	}
243
244	return NULp;
245	}
246
247	static char MG_create_current_field_content(AW_root aw_root, GBDATA *gb_species, GB_ERROR& error) {
248	CreationMethod method = (CreationMethod)aw_root->awar(AWAR_MERGE_GENE_SPECIES_METHOD)->read_int();
249	char *origins_field = aw_root->awar(AWAR_MERGE_GENE_SPECIES_SOURCE)->read_string();
250	char *aci = aw_root->awar(AWAR_MERGE_GENE_SPECIES_ACI)->read_string();
251
252	char *result = MG_create_field_content(gb_species, method, origins_field, aci, error, NULp);
253
254	free(aci);
255	free(origins_field);
256
257	return result;
258	}
259
260	static void MG_update_example(AW_root *aw_root) {
261	char *result = NULp;
262	GB_ERROR error = NULp;
263	char *curr_species = aw_root->awar(MG_left_AWAR_SPECIES_NAME())->read_string();
264
265	if (!curr_species \|\| !curr_species[0]) error = "No species selected.";
266	else {
267	GB_transaction ta(GLOBAL_gb_src);
268	GBDATA *gb_species = GBT_find_species(GLOBAL_gb_src, curr_species);
269
270	if (!gb_species) error = GB_export_errorf("No such species: '%s'", curr_species);
271	else if (!GEN_is_pseudo_gene_species(gb_species)) error = "Selected species is no gene-species";
272	else {
273	result = MG_create_current_field_content(aw_root, gb_species, error);
274	}
275	}
276
277	if (!error && !result) error = "no result";
278	if (error) freeset(result, GBS_global_string_copy("<%s>", error));
279
280	aw_root->awar(AWAR_MERGE_GENE_SPECIES_EXAMPLE)->write_string(result);
281
282	free(result);
283	free(curr_species);
284	}
285
286	static void check_and_correct_current_field(char*& cur_field) {
287	if (ARB_stricmp(cur_field, "name") == 0 \|\| ARB_stricmp(cur_field, "acc") == 0) {
288	aw_message("rules writing to 'name' or 'acc' are not allowed.");
289	freeset(cur_field, GBS_global_string_copy("%s_not_allowed", cur_field));
290	}
291	}
292
293
294	static bool allow_callbacks = true;
295
296	static void MG_current_field_def_changed_cb(AW_root *aw_root) {
297	if (allow_callbacks) {
298	LocallyModify<bool> flag(allow_callbacks, false);
299
300	char *cur_field = aw_root->awar(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD)->read_string();
301	check_and_correct_current_field(cur_field);
302
303	aw_root->awar(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD)->write_string(cur_field);
304	aw_root->awar(AWAR_MERGE_GENE_SPECIES_DEST)->write_string(cur_field);
305
306	if (cur_field[0]) {
307	const char *awar_name = field_awar(cur_field, "source");
308
309	// read stored source field (if undef default to new value of destination field)
310	char *source_field = aw_root->awar_string(awar_name, cur_field, MG_props)->read_string();
311	aw_root->awar(AWAR_MERGE_GENE_SPECIES_SOURCE)->write_string(source_field);
312	free(source_field);
313
314	// read stored method (if undef then default to currently visible method)
315	awar_name = field_awar(cur_field, "method");
316	int def_method = aw_root->awar(AWAR_MERGE_GENE_SPECIES_METHOD)->read_int();
317	int method = aw_root->awar_int(awar_name, def_method, MG_props)->read_int();
318	aw_root->awar(AWAR_MERGE_GENE_SPECIES_METHOD)->write_int(method);
319
320	// read stored aci (if undef then default to currently visible aci )
321	awar_name = field_awar(cur_field, "aci");
322	char *curr_aci = aw_root->awar(AWAR_MERGE_GENE_SPECIES_ACI)->read_string();
323	char *aci = aw_root->awar_string(awar_name, curr_aci, MG_props)->read_string();
324	aw_root->awar(AWAR_MERGE_GENE_SPECIES_ACI)->write_string(aci);
325	free(aci);
326	free(curr_aci);
327
328	MG_update_example(aw_root);
329	}
330
331	free(cur_field);
332	}
333	}
334
335	static void MG_source_field_changed_cb(AW_root *aw_root) {
336	if (allow_callbacks) {
337	const char *awar_name = current_field_awar(aw_root, "source");
338	if (awar_name) { // if a rule is selected
339	char *source_field = aw_root->awar(AWAR_MERGE_GENE_SPECIES_SOURCE)->read_string();
340	int method = aw_root->awar(AWAR_MERGE_GENE_SPECIES_METHOD)->read_int();
341
342	if (source_field[0] && method == MG_CREATE_USING_ACI_ONLY) {
343	aw_message("Source field is not used with this method");
344	source_field[0] = 0;
345	}
346
347	aw_root->awar(awar_name)->write_string(source_field);
348	free(source_field);
349
350	MG_update_example(aw_root);
351	}
352	}
353	}
354
355	static void MG_dest_field_changed_cb(AW_root *aw_root) {
356	if (allow_callbacks) {
357	// if this is changed -> a new definition will be generated
358	char *dest_field = aw_root->awar(AWAR_MERGE_GENE_SPECIES_DEST)->read_string();
359	check_and_correct_current_field(dest_field);
360
361	const char *search = GBS_global_string(";%s;", dest_field);
362	char *existing_definitions = aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS)->read_string();
363
364	mg_assert(existing_definitions[0] == ';');
365
366	if (!strstr(existing_definitions, search)) { // not found -> create a new definition
367	aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS)
368	->write_string(GBS_global_string("%s%s;", existing_definitions, dest_field));
369
370	}
371	aw_root->awar(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD)->write_string(dest_field);
372
373	free(existing_definitions);
374	free(dest_field);
375
376	MG_update_example(aw_root);
377	}
378	}
379
380	static void MG_method_changed_cb(AW_root *aw_root) {
381	if (allow_callbacks) {
382	const char *awar_name = current_field_awar(aw_root, "method");
383
384	if (awar_name) {
385	int method = aw_root->awar(AWAR_MERGE_GENE_SPECIES_METHOD)->read_int();
386	aw_root->awar(awar_name)->write_int(method);
387	if (method == MG_CREATE_USING_ACI_ONLY) {
388	aw_root->awar(AWAR_MERGE_GENE_SPECIES_SOURCE)->write_string(""); // clear source field
389	}
390	MG_update_example(aw_root);
391	}
392	}
393	}
394
395	static void MG_delete_selected_field_def(AW_window *aww) {
396	AW_root *aw_root = aww->get_root();
397	char *cur_field = aw_root->awar(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD)->read_string();
398
399	if (cur_field[0]) {
400	char *existing_definitions = aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS)->read_string();
401	const char *search = GBS_global_string(";%s;", cur_field);
402
403	mg_assert(existing_definitions[0] == ';');
404
405	char *found = strstr(existing_definitions, search);
406	mg_assert(found);
407	if (found) {
408	strcpy(found, found+strlen(cur_field)+1); // remove that config
409	aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS)->write_string(existing_definitions);
410	aw_root->awar(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD)->write_string("");
411	}
412
413	free(existing_definitions);
414	}
415	else {
416	aw_message("No field selected.");
417	}
418
419	free(cur_field);
420	}
421
422	static void MG_aci_changed_cb(AW_root *aw_root) {
423	if (allow_callbacks) {
424	const char *awar_name = current_field_awar(aw_root, "aci");
425	if (awar_name) { // if a rule is selected
426	char *aci = aw_root->awar(AWAR_MERGE_GENE_SPECIES_ACI)->read_string();
427	aw_root->awar(awar_name)->write_string(aci);
428	free(aci);
429	MG_update_example(aw_root);
430	}
431	}
432	}
433
434	static void MG_update_selection_list_on_field_transfers(AW_root aw_root, AW_selection_list geneSpecFieldList) {
435	geneSpecFieldList->clear();
436
437	{
438	char *existing_definitions = aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS)->read_string();
439	char *start = existing_definitions+1;
440
441	mg_assert(existing_definitions[0] == ';');
442
443	while (start[0]) { // parse existing definitions and add them to selection list
444	char *end = strchr(start, ';');
445	if (!end) end = strchr(start, 0);
446	int len = end-start;
447	if (len<1) break;
448
449	mg_assert(end[0] == ';');
450	end[0] = 0;
451	geneSpecFieldList->insert(start, start);
452	start = end+1;
453	}
454
455	free(existing_definitions);
456	}
457
458	geneSpecFieldList->insert_default("", "");
459	geneSpecFieldList->update();
460	}
461
462	static void init_gene_species_xfer_fields_subconfig(AWT_config_definition& cdef, char *existing_definitions) {
463	char *start = existing_definitions+1;
464	mg_assert(existing_definitions[0] == ';');
465
466	for (int count = 0; start[0]; ++count) { // parse existing definitions and add them to config
467	char *end = strchr(start, ';');
468	if (!end) end = strchr(start, 0);
469	int len = end-start;
470	if (len<1) break;
471
472	mg_assert(end[0] == ';');
473	end[0] = 0;
474
475	// add config :
476	#define add_config(s, id) cdef.add(field_awar(s, id), id, count)
477
478	create_awars_for_field(start);
479
480	add_config(start, "source");
481	add_config(start, "method");
482	add_config(start, "aci");
483
484	#undef add_config
485
486	end[0] = ';';
487
488	start = end+1;
489	}
490	}
491	static void init_gene_species_xfer_fields_config(AWT_config_definition& cdef) {
492	cdef.add(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS, "fields");
493	cdef.add(AWAR_MERGE_GENE_SPECIES_FIELDS_SAVE, "defs");
494	}
495	static char *store_gene_species_xfer_fields() {
496	AW_root *aw_root = AW_root::SINGLETON;
497	{
498	char *existing_definitions = aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS)->read_string();
499	AWT_config_definition cdef;
500
501	init_gene_species_xfer_fields_subconfig(cdef, existing_definitions);
502
503	char *sub_config = cdef.read(); // save single configs to sub_config
504	aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_SAVE)->write_string(sub_config);
505
506	free(sub_config);
507	free(existing_definitions);
508	}
509
510	// save AWAR_MERGE_GENE_SPECIES_FIELDS_SAVE and AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS
511	AWT_config_definition sub_cdef;
512	init_gene_species_xfer_fields_config(sub_cdef);
513	return sub_cdef.read();
514	}
515
516	static void load_or_reset_gene_species_xfer_fields(const char stored_string, AW_selection_list geneSpecFieldList) {
517	// if stored_string==NULp -> reset
518	AW_root *aw_root = AW_root::SINGLETON;
519
520	aw_root->awar(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD)->write_string(""); // de-select
521
522	// Load 'AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS' and 'AWAR_MERGE_GENE_SPECIES_FIELDS_SAVE'
523	{
524	AWT_config_definition sub_cdef;
525	init_gene_species_xfer_fields_config(sub_cdef);
526	if (stored_string) {
527	sub_cdef.write(stored_string);
528	}
529	else {
530	sub_cdef.reset();
531	}
532	}
533
534	{
535	char *existing_definitions = aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS)->read_string();
536	char *sub_config = aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_SAVE)->read_string();
537
538	AWT_config_definition cdef;
539	init_gene_species_xfer_fields_subconfig(cdef, existing_definitions);
540	cdef.write(sub_config);
541
542	free(sub_config);
543	free(existing_definitions);
544	}
545
546	MG_update_selection_list_on_field_transfers(aw_root, geneSpecFieldList); // refresh mask
547	}
548
549	AW_window MG_gene_species_create_field_transfer_def_window(AW_root aw_root) {
550	static AW_window_simple *aws = NULp;
551	if (aws) return aws;
552
553	aws = new AW_window_simple;
554	aws->init(aw_root, "DEFINE_GENE_SPECIES_FIELDS", "DEFINE FIELDS EXPORTED WITH GENE SPECIES");
555	aws->load_xfig("merge/mg_def_gene_species_fields.fig");
556
557	aws->at("close");
558	aws->callback(AW_POPDOWN);
559	aws->create_button("CLOSE", "CLOSE", "C");
560
561	aws->at("help");
562	aws->callback(makeHelpCallback("gene_species_field_transfer.hlp"));
563	aws->create_button("HELP", "HELP");
564
565	aws->at("active");
566	aws->create_toggle(AWAR_MERGE_GENE_SPECIES_CREATE_FIELDS);
567
568	aws->at("src");
569	aws->create_input_field(AWAR_MERGE_GENE_SPECIES_SOURCE); // @@@ use field selection (either from organism or from gene); need custom window-popper + intermediate awars here
570
571	aws->at("delete");
572	aws->callback(MG_delete_selected_field_def);
573	aws->create_button("DELETE", "DELETE");
574
575	aws->at("sel_method");
576	aws->create_toggle_field(AWAR_MERGE_GENE_SPECIES_METHOD, NULp, "");
577	aws->insert_toggle("Copy from organism", "O", MG_CREATE_COPY_ORGANISM);
578	aws->insert_toggle("Copy from gene", "G", MG_CREATE_COPY_GENE);
579	aws->insert_toggle("Only use ACI below", "A", MG_CREATE_USING_ACI_ONLY);
580	aws->update_toggle_field();
581
582	aws->at("aci");
583	aws->create_input_field(AWAR_MERGE_GENE_SPECIES_ACI);
584
585	aws->at("dest");
586	aws->create_input_field(AWAR_MERGE_GENE_SPECIES_DEST); // @@@ use field selection (with SF_ALLOW_NEW), but create field instantly. Otherwise too complicated.
587
588	aws->at("example");
589	aws->create_text_field(AWAR_MERGE_GENE_SPECIES_EXAMPLE, 40, 3);
590
591	aws->at("fields");
592	AW_selection_list *geneSpecFieldList = aws->create_selection_list(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD, 10, 30, true);
593
594	MG_update_selection_list_on_field_transfers(aw_root, geneSpecFieldList);
595
596	aws->at("save");
597	AWT_insert_config_manager(aws, AW_ROOT_DEFAULT, "gene_species_field_xfer",
598	makeStoreConfigCallback(store_gene_species_xfer_fields),
599	makeRestoreConfigCallback(load_or_reset_gene_species_xfer_fields, geneSpecFieldList));
600
601	// add callbacks for this window :
602	aw_root->awar(AWAR_MERGE_GENE_SPECIES_FIELDS_DEFS)->add_callback(makeRootCallback(MG_update_selection_list_on_field_transfers, geneSpecFieldList));
603	aw_root->awar(AWAR_MERGE_GENE_SPECIES_CURRENT_FIELD)->add_callback(MG_current_field_def_changed_cb);
604	aw_root->awar(AWAR_MERGE_GENE_SPECIES_SOURCE)->add_callback(MG_source_field_changed_cb);
605	aw_root->awar(AWAR_MERGE_GENE_SPECIES_DEST)->add_callback(MG_dest_field_changed_cb);
606	aw_root->awar(AWAR_MERGE_GENE_SPECIES_METHOD)->add_callback(MG_method_changed_cb);
607	aw_root->awar(AWAR_MERGE_GENE_SPECIES_ACI)->add_callback(MG_aci_changed_cb);
608	aw_root->awar(MG_left_AWAR_SPECIES_NAME())->add_callback(MG_update_example);
609
610	return aws;
611	}
612
613
614
615
616

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