source: tags/arb-6.0/NTREE/NT_local_proto.h

Last change on this file was 11629, checked in by epruesse, 10 years ago

remove "SAI→Other→Positional Variability" feature (decided in #359)

the feature was broken and not deemed important enough to repair
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 4.0 KB
Line 
1/* This file is generated by aisc_mkpt.
2 * Any changes you make here will be overwritten later!
3 */
4
5#ifndef NT_LOCAL_PROTO_H
6#define NT_LOCAL_PROTO_H
7
8/* define ARB attributes: */
9#ifndef ATTRIBUTES_H
10# include <attributes.h>
11#endif
12
13
14/* AP_consensus.cxx */
15void AP_create_consensus_var(AW_root *aw_root, AW_default aw_def);
16AW_window *AP_create_con_expert_window(AW_root *aw_root);
17AW_window *AP_create_max_freq_window(AW_root *aw_root);
18
19/* AP_pos_var_pars.cxx */
20AW_window *AP_create_pos_var_pars_window(AW_root *root);
21
22/* ColumnStat_2_gnuplot.cxx */
23AW_window *NT_create_colstat_2_gnuplot_window(AW_root *root);
24
25/* NT_branchAnalysis.cxx */
26
27class AWT_canvas;
28
29AW_window *NT_create_branch_analysis_window(AW_root *aw_root, AWT_canvas *ntw);
30
31/* NT_cb.cxx */
32
33#ifndef ARBDB_BASE_H
34#include <arbdb_base.h>
35#endif
36#ifndef AW_BASE_HXX
37#include <aw_base.hxx>
38#endif
39class AWT_canvas;
40
41void NT_delete_mark_all_cb(void *, AWT_canvas *ntw);
42AW_window *NT_create_select_tree_window(AW_root *awr, const char *awar_tree);
43void NT_select_bottom_tree(AW_window *aww, const char *awar_tree);
44AW_window *NT_create_select_alignment_window(AW_root *awr);
45void NT_system_cb(AW_window *aww, AW_CL cl_command, AW_CL cl_auto_help_file);
46void NT_system_in_xterm_cb(AW_window *aww, AW_CL cl_command, AW_CL cl_auto_help_file);
47
48/* NT_concatenate.cxx */
49void NT_createConcatenationAwars(AW_root *aw_root, AW_default aw_def);
50AW_window *NT_createMergeSimilarSpeciesWindow(AW_root *aw_root);
51AW_window *NT_createConcatenationWindow(AW_root *aw_root);
52
53/* NT_dbrepair.cxx */
54GB_ERROR NT_repair_DB(GBDATA *gb_main);
55void NT_rerepair_DB(AW_window *, AW_CL cl_gbmain, AW_CL dummy_1x);
56
57/* NT_edconf.cxx */
58void NT_popup_configuration_admin(AW_window *aw_main, AW_CL cl_ntw, AW_CL dummy_1x);
59AW_window *NT_create_startEditorOnOldConfiguration_window(AW_root *awr);
60void NT_start_editor_on_tree(AW_window *, AW_CL cl_use_species_aside, AW_CL cl_ntw);
61
62/* NT_extern.cxx */
63int NT_get_canvas_id(AWT_canvas *ntw);
64
65/* NT_import.cxx */
66void NT_import_sequences(AW_window *aww, AW_CL dummy_1x, AW_CL dummy_2x);
67
68/* NT_join.cxx */
69AW_window *NT_create_species_join_window(AW_root *root);
70
71/* NT_main.cxx */
72GB_ERROR NT_format_all_alignments(GBDATA *gb_main);
73
74/* NT_sort.cxx */
75void NT_resort_data_by_phylogeny(AW_window *, AW_CL cl_ntw, AW_CL dummy_1x);
76void NT_create_resort_awars(AW_root *awr, AW_default aw_def);
77AW_window *NT_create_resort_window(AW_root *awr);
78
79/* NT_trackAliChanges.cxx */
80void NT_create_trackAliChanges_Awars(AW_root *root, AW_default properties);
81AW_window *NT_create_trackAliChanges_window(AW_root *root);
82
83/* NT_userland_fixes.cxx */
84void NT_repair_userland_problems(void);
85
86/* NT_validManual.cxx */
87void NT_createValidNamesAwars(AW_root *aw_root, AW_default aw_def);
88AW_window *NT_create_searchManuallyNames_window(AW_root *aw_root);
89
90/* NT_validNames.cxx */
91void NT_deleteValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
92void NT_importValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
93void NT_suggestValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
94
95/* ad_ali.cxx */
96void NT_create_alignment_vars(AW_root *aw_root, AW_default aw_def);
97AW_window *NT_create_alignment_window(AW_root *root, AW_window *aw_popmedown);
98
99/* ad_ext.cxx */
100AW_window *NT_create_extendeds_window(AW_root *aw_root);
101
102/* ad_spec.cxx */
103void NT_count_different_chars(AW_window *, AW_CL cl_gb_main, AW_CL dummy_1x);
104void NT_create_sai_from_pfold(AW_window *aww, AW_CL ntw, AW_CL dummy_1x);
105
106/* ad_transpro.cxx */
107AW_window *NT_create_dna_2_pro_window(AW_root *root);
108AW_window *NT_create_realign_dna_window(AW_root *root);
109void NT_create_transpro_variables(AW_root *root, AW_default db1);
110
111/* ad_trees.cxx */
112AW_window *NT_create_consense_window(AW_root *aw_root);
113AW_window *NT_create_sort_tree_by_other_tree_window(AW_root *aw_root, AWT_canvas *ntw);
114void NT_create_multifurcate_tree_awars(AW_root *aw_root, AW_default props);
115AW_window *NT_create_multifurcate_tree_window(AW_root *aw_root, AWT_canvas *ntw);
116
117#else
118#error NT_local_proto.h included twice
119#endif /* NT_LOCAL_PROTO_H */
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