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| 1 | // ================================================================ // |
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| 2 | // // |
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| 3 | // File : Feature.h // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Coded by Ralf Westram (coder@reallysoft.de) in November 2006 // |
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| 7 | // Institute of Microbiology (Technical University Munich) // |
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| 8 | // http://www.arb-home.de/ // |
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| 9 | // // |
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| 10 | // ================================================================ // |
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| 11 | #ifndef FEATURE_H |
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| 12 | #define FEATURE_H |
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| 13 | |
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| 14 | #ifndef LOCATION_H |
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| 15 | #include "Location.h" |
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| 16 | #endif |
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| 17 | |
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| 18 | class Feature { |
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| 19 | std::string type; |
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| 20 | LocationPtr location; |
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| 21 | stringMap qualifiers; // qualifiers with content (content of multiple identical qualifiers gets merged) |
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| 22 | |
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| 23 | public: |
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| 24 | Feature(const std::string& Type, const std::string& locationString); |
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| 25 | |
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| 26 | void addQualifiedEntry(const std::string& qualifier, const std::string& value); |
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| 27 | |
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| 28 | std::string createGeneName() const; // creates a (non-unique) default name for gene |
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| 29 | |
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| 30 | const std::string& getType() const { return type; } |
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| 31 | const Location& getLocation() const { return *location; } |
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| 32 | const stringMap& getQualifiers() const { return qualifiers; } |
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| 33 | |
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| 34 | void expectLocationInSequence(long seqLength) const; |
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| 35 | |
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| 36 | void fixEmptyQualifiers(); |
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| 37 | }; |
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| 38 | |
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| 39 | |
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| 40 | #else |
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| 41 | #error Feature.h included twice |
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| 42 | #endif // FEATURE_H |
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| 43 | |
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