source: tags/ms_r16q2/NTREE/NT_local_proto.h

Last change on this file was 14988, checked in by westram, 8 years ago
  • ItemShader_impl now knows its AW_gc_manager
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 4.6 KB
Line 
1/* This file is generated by aisc_mkpt.
2 * Any changes you make here will be overwritten later!
3 */
4
5#ifndef NT_LOCAL_PROTO_H
6#define NT_LOCAL_PROTO_H
7
8/* define ARB attributes: */
9#ifndef ATTRIBUTES_H
10# include <attributes.h>
11#endif
12
13
14/* AP_consensus.cxx */
15void AP_create_consensus_var(AW_root *aw_root, AW_default aw_def);
16AW_window *AP_create_con_expert_window(AW_root *aw_root);
17AW_window *AP_create_max_freq_window(AW_root *aw_root);
18
19/* AP_pos_var_pars.cxx */
20AW_window *AP_create_pos_var_pars_window(AW_root *root);
21
22/* ColumnStat_2_gnuplot.cxx */
23AW_window *NT_create_colstat_2_gnuplot_window(AW_root *root);
24
25/* NT_branchAnalysis.cxx */
26
27class AWT_canvas;
28
29AW_window *NT_create_branch_analysis_window(AW_root *aw_root, AWT_canvas *ntw);
30
31/* NT_cb.cxx */
32
33#ifndef ARBDB_BASE_H
34#include <arbdb_base.h>
35#endif
36#ifndef AW_BASE_HXX
37#include <aw_base.hxx>
38#endif
39class AWT_canvas;
40
41void NT_delete_mark_all_cb(AW_window *, AWT_canvas *ntw);
42AW_window *NT_create_select_tree_window(AW_root *awr, const char *awar_tree);
43void NT_select_bottom_tree(AW_window *aww, const char *awar_tree);
44void NT_create_alignment_vars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main);
45AW_window *NT_create_alignment_admin_window(AW_root *root, AW_window *aw_popmedown);
46AW_window *NT_create_select_alignment_window(AW_root *awr);
47void NT_system_cb(AW_window *, const char *command);
48void NT_xterm(AW_window *);
49void NT_system_in_xterm_cb(AW_window *, const char *command);
50
51/* NT_concatenate.cxx */
52void NT_createConcatenationAwars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main);
53AW_window *NT_createMergeSimilarSpeciesWindow(AW_root *aw_root);
54AW_window *NT_createConcatenationWindow(AW_root *aw_root);
55
56/* NT_dbrepair.cxx */
57GB_ERROR NT_repair_DB(GBDATA *gb_main);
58void NT_rerepair_DB(AW_window *, GBDATA *gb_main);
59
60/* NT_edconf.cxx */
61void NT_activate_configMarkers_display(AWT_canvas *ntw);
62void NT_popup_configuration_admin(AW_window *aw_main, AWT_canvas *ntw);
63AW_window *NT_create_startEditorOnOldConfiguration_window(AW_root *awr);
64void NT_start_editor_on_tree(AW_window *aww, int use_species_aside, AWT_canvas *ntw);
65void NT_create_config_after_import(AWT_canvas *ntw, bool imported_from_scratch);
66
67/* NT_extern.cxx */
68void NT_start(const char *arb_ntree_args, bool restart_with_new_ARB_PID);
69void NT_exit(AW_window *aws, int exitcode);
70void NT_restart(AW_root *aw_root, const char *arb_ntree_args);
71TreeNode *NT_get_tree_root_of_canvas(AWT_canvas *ntw);
72int NT_get_canvas_id(AWT_canvas *ntw);
73AWT_canvas *NT_create_main_window(AW_root *aw_root);
74
75/* NT_import.cxx */
76void NT_import_sequences(AW_window *aww, AWT_canvas *ntw);
77
78/* NT_join.cxx */
79AW_window *NT_create_species_join_window(AW_root *root);
80
81/* NT_main.cxx */
82GB_ERROR NT_format_all_alignments(GBDATA *gb_main);
83
84/* NT_shadeTree.cxx */
85void NT_install_treeShader(AWT_canvas *ntw, GBDATA *gb_main);
86void NT_configure_treeShader(void);
87
88/* NT_sort.cxx */
89void NT_resort_data_by_phylogeny(AW_window *, AWT_canvas *ntw);
90void NT_create_resort_awars(AW_root *awr, AW_default aw_def);
91AW_window *NT_create_resort_window(AW_root *awr);
92
93/* NT_taxonomy.cxx */
94void NT_create_compare_taxonomy_awars(AW_root *aw_root, AW_default props);
95AW_window *NT_create_compare_taxonomy_window(AW_root *aw_root, AWT_canvas *ntw);
96
97/* NT_trackAliChanges.cxx */
98void NT_create_trackAliChanges_Awars(AW_root *root, AW_default properties);
99AW_window *NT_create_trackAliChanges_window(AW_root *root);
100
101/* NT_userland_fixes.cxx */
102void NT_repair_userland_problems(void);
103
104/* NT_validManual.cxx */
105void NT_createValidNamesAwars(AW_root *aw_root, AW_default aw_def);
106AW_window *NT_create_searchManuallyNames_window(AW_root *aw_root);
107
108/* NT_validNames.cxx */
109void NT_deleteValidNames(AW_window *);
110void NT_importValidNames(AW_window *);
111void NT_suggestValidNames(AW_window *);
112
113/* ad_ext.cxx */
114void NT_create_extendeds_vars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main);
115AW_window *NT_create_extendeds_window(AW_root *aw_root);
116
117/* ad_spec.cxx */
118void NT_count_different_chars(AW_window *, GBDATA *gb_main);
119void NT_create_sai_from_pfold(AW_window *aww, AWT_canvas *ntw);
120
121/* ad_transpro.cxx */
122AW_window *NT_create_dna_2_pro_window(AW_root *root);
123AW_window *NT_create_realign_dna_window(AW_root *root);
124void NT_create_transpro_variables(AW_root *root, AW_default props);
125
126/* ad_trees.cxx */
127AW_window *NT_create_consense_window(AW_root *aw_root);
128AW_window *NT_create_sort_tree_by_other_tree_window(AW_root *aw_root, AWT_canvas *ntw);
129void NT_create_multifurcate_tree_awars(AW_root *aw_root, AW_default props);
130AW_window *NT_create_multifurcate_tree_window(AW_root *aw_root, AWT_canvas *ntw);
131
132#else
133#error NT_local_proto.h included twice
134#endif /* NT_LOCAL_PROTO_H */
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