source: tags/ms_r16q3/NTREE/NT_local_proto.h

Last change on this file was 15340, checked in by westram, 8 years ago
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File size: 4.7 KB
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1/* This file is generated by aisc_mkpt.
2 * Any changes you make here will be overwritten later!
3 */
4
5#ifndef NT_LOCAL_PROTO_H
6#define NT_LOCAL_PROTO_H
7
8/* define ARB attributes: */
9#ifndef ATTRIBUTES_H
10# include <attributes.h>
11#endif
12
13
14/* AP_consensus.cxx */
15
16#ifndef AW_BASE_HXX
17#include <aw_base.hxx>
18#endif
19
20void AP_create_consensus_var(AW_root *aw_root, AW_default aw_def);
21AW_window *AP_create_con_expert_window(AW_root *aw_root);
22AW_window *AP_create_max_freq_window(AW_root *aw_root);
23
24/* AP_pos_var_pars.cxx */
25AW_window *AP_create_pos_var_pars_window(AW_root *root);
26
27/* ColumnStat_2_gnuplot.cxx */
28AW_window *NT_create_colstat_2_gnuplot_window(AW_root *root);
29
30/* NT_branchAnalysis.cxx */
31
32class TREE_canvas;
33
34AW_window *NT_create_branch_analysis_window(AW_root *aw_root, TREE_canvas *ntw);
35
36/* NT_cb.cxx */
37
38#ifndef ARBDB_BASE_H
39#include <arbdb_base.h>
40#endif
41class TREE_canvas;
42
43void NT_delete_mark_all_cb(AW_window *, TREE_canvas *ntw);
44AW_window *NT_create_select_tree_window(AW_root *awr, const char *awar_tree);
45void NT_select_bottom_tree(AW_window *aww, const char *awar_tree);
46void NT_create_alignment_vars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main);
47AW_window *NT_create_alignment_admin_window(AW_root *root, AW_window *aw_popmedown);
48AW_window *NT_create_select_alignment_window(AW_root *awr);
49
50/* NT_concatenate.cxx */
51void NT_createConcatenationAwars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main);
52AW_window *NT_createMergeSimilarSpeciesWindow(AW_root *aw_root);
53AW_window *NT_createConcatenationWindow(AW_root *aw_root);
54
55/* NT_dbrepair.cxx */
56GB_ERROR NT_repair_DB(GBDATA *gb_main);
57void NT_rerepair_DB(AW_window *, GBDATA *gb_main);
58
59/* NT_edconf.cxx */
60void NT_activate_configMarkers_display(TREE_canvas *ntw);
61void NT_popup_configuration_admin(AW_window *aw_main, TREE_canvas *ntw);
62AW_window *NT_create_startEditorOnOldConfiguration_window(AW_root *awr);
63void NT_start_editor_on_tree(AW_window *aww, int use_species_aside, TREE_canvas *ntw);
64void NT_create_config_after_import(TREE_canvas *ntw, bool imported_from_scratch);
65
66/* NT_extern.cxx */
67void NT_start(const char *arb_ntree_args, bool restart_with_new_ARB_PID);
68void NT_exit(AW_window *aws, int exitcode);
69void NT_restart(AW_root *aw_root, const char *arb_ntree_args);
70TreeNode *NT_get_tree_root_of_canvas(TREE_canvas *ntw);
71TREE_canvas *NT_get_canvas_by_index(int idx);
72void NT_fill_canvas_selection_list(class AW_selection_list *sellst, TREE_canvas *to_skip);
73TREE_canvas *NT_create_main_window(AW_root *aw_root);
74
75/* NT_import.cxx */
76void NT_import_sequences(AW_window *aww, TREE_canvas *ntw);
77
78/* NT_join.cxx */
79AW_window *NT_create_species_join_window(AW_root *root);
80
81/* NT_main.cxx */
82GB_ERROR NT_format_all_alignments(GBDATA *gb_main);
83
84/* NT_shadeTree.cxx */
85void NT_install_treeShader(TREE_canvas *ntw, GBDATA *gb_main);
86void NT_configure_treeShader(void);
87
88/* NT_sort.cxx */
89void NT_resort_data_by_phylogeny(AW_window *, TREE_canvas *ntw);
90void NT_create_resort_awars(AW_root *awr, AW_default aw_def);
91AW_window *NT_create_resort_window(AW_root *awr);
92
93/* NT_sync_scroll.cxx */
94AW_window *NT_create_syncScroll_window(AW_root *awr, TREE_canvas *ntw);
95
96/* NT_taxonomy.cxx */
97void NT_create_compare_taxonomy_awars(AW_root *aw_root, AW_default props);
98AW_window *NT_create_compare_taxonomy_window(AW_root *aw_root, TREE_canvas *ntw);
99
100/* NT_trackAliChanges.cxx */
101void NT_create_trackAliChanges_Awars(AW_root *root, AW_default properties);
102AW_window *NT_create_trackAliChanges_window(AW_root *root);
103
104/* NT_userland_fixes.cxx */
105void NT_repair_userland_problems(void);
106
107/* NT_validManual.cxx */
108void NT_createValidNamesAwars(AW_root *aw_root, AW_default aw_def);
109AW_window *NT_create_searchManuallyNames_window(AW_root *aw_root);
110
111/* NT_validNames.cxx */
112void NT_deleteValidNames(AW_window *);
113void NT_importValidNames(AW_window *);
114void NT_suggestValidNames(AW_window *);
115
116/* ad_ext.cxx */
117void NT_create_extendeds_vars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main);
118AW_window *NT_create_extendeds_window(AW_root *aw_root);
119
120/* ad_spec.cxx */
121void NT_count_different_chars(AW_window *, GBDATA *gb_main);
122void NT_create_sai_from_pfold(AW_window *aww, TREE_canvas *ntw);
123
124/* ad_transpro.cxx */
125AW_window *NT_create_dna_2_pro_window(AW_root *root);
126AW_window *NT_create_realign_dna_window(AW_root *root);
127void NT_create_transpro_variables(AW_root *root, AW_default props);
128
129/* ad_trees.cxx */
130AW_window *NT_create_consense_window(AW_root *aw_root);
131AW_window *NT_create_sort_tree_by_other_tree_window(AW_root *aw_root, TREE_canvas *ntw);
132void NT_create_multifurcate_tree_awars(AW_root *aw_root, AW_default props);
133AW_window *NT_create_multifurcate_tree_window(AW_root *aw_root, TREE_canvas *ntw);
134
135#else
136#error NT_local_proto.h included twice
137#endif /* NT_LOCAL_PROTO_H */
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