../
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AISC
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10113
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11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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AISC_COM
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10083
|
11 years
|
westram |
reintegrated branch 'macros2'
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AISC_MKPTPS
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10003
|
11 years
|
westram |
* merge from ptsfix [9380]
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ARB_GDE
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10106
|
11 years
|
westram |
* fix a bunch of compiler warnings
- several NDEBUG warnings …
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ARBDB
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10083
|
11 years
|
westram |
reintegrated branch 'macros2'
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AWT
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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AWTC
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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AWTI
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10083
|
11 years
|
westram |
reintegrated branch 'macros2'
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bin
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9752
|
11 years
|
westram |
- ignore new bin entries
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BINDEP
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8273
|
12 years
|
westram |
- removed dead ALIV3
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BINDINGS
|
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9435
|
11 years
|
westram |
- ignores applied
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BUGEX
|
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7044
|
13 years
|
westram |
* fixed include wrappers (merges [7006] [7007])
- use gcc-style …
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CONSENSUS_TREE
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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CONVERTALN
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9899
|
11 years
|
epruesse |
pass down argc/argv to AW_root::AW_root (for GTK)
GTK will pick its …
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CORE
|
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10101
|
11 years
|
westram |
- reverts [10100]
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DBSERVER
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10083
|
11 years
|
westram |
reintegrated branch 'macros2'
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DIST
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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doc
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6141
|
15 years
|
westram |
* spellchecked all (phew)
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EDIT4
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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EISPACK
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9575
|
11 years
|
westram |
- effect of [9574] (comments only)
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etc
|
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6141
|
15 years
|
westram |
* spellchecked all (phew)
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GDE
|
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9575
|
11 years
|
westram |
- effect of [9574] (comments only)
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GDEHELP
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9750
|
11 years
|
westram |
- applied (not merged!) [9668] from gtk_only.
- merge did not work …
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GENOM
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10116
|
11 years
|
westram |
- removed obsolete include-hack
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GENOM_IMPORT
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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GL
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9704
|
11 years
|
westram |
* removed default entries (see [9703]) from ARB_NT and ARB_PARSIMONY
…
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HEADERLIBS
|
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7895
|
13 years
|
westram |
* added arb_rnacma (correlated mutation analysis) written by Breno …
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HELP_SOURCE
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10096
|
11 years
|
westram |
* updated version information
* changelog
- updated missing …
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ISLAND_HOPPING
|
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9575
|
11 years
|
westram |
- effect of [9574] (comments only)
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lib
|
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10078
|
11 years
|
westram |
* use sockets in $(ARBHOME)/UNIT_TESTER/sockets
- otherwise …
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MERGE
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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MULTI_PROBE
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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NALIGNER
|
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9899
|
11 years
|
epruesse |
pass down argc/argv to AW_root::AW_root (for GTK)
GTK will pick its …
|
NAMES
|
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10083
|
11 years
|
westram |
reintegrated branch 'macros2'
|
NAMES_COM
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9575
|
11 years
|
westram |
- effect of [9574] (comments only)
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NTREE
|
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10117
|
11 years
|
westram |
* fix include-chaos in NTREE
- all headers named
* .h (some …
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PARSIMONY
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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PERL2ARB
|
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9750
|
11 years
|
westram |
- applied (not merged!) [9668] from gtk_only.
- merge did not work …
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PERL_SCRIPTS
|
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8319
|
12 years
|
westram |
* ignored PERL2ARB interface as referrer (to detect functions that are …
|
PERLTOOLS
|
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9899
|
11 years
|
epruesse |
pass down argc/argv to AW_root::AW_root (for GTK)
GTK will pick its …
|
PGT
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
|
PHYLO
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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PRIMER_DESIGN
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
|
PROBE
|
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10106
|
11 years
|
westram |
* fix a bunch of compiler warnings
- several NDEBUG warnings …
|
PROBE_COM
|
|
9575
|
11 years
|
westram |
- effect of [9574] (comments only)
|
PROBE_DESIGN
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
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PROBE_SET
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
|
ptpan
|
|
7935
|
13 years
|
westram |
- removed outdated ptpan
|
READSEQ
|
|
9575
|
11 years
|
westram |
- effect of [9574] (comments only)
|
RNA3D
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
|
RNACMA
|
|
10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
|
SECEDIT
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
|
SEQ_QUALITY
|
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10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
|
SERVERCNTRL
|
|
10083
|
11 years
|
westram |
reintegrated branch 'macros2'
|
SH
|
|
9817
|
11 years
|
westram |
* merging DBs from intro-window was no longer possible if arb_ntree …
|
SL
|
|
10113
|
11 years
|
westram |
* changed dynamic value-initializations into default-initializations
…
|
SOURCE_TOOLS
|
|
10114
|
11 years
|
westram |
* NTREE
- renamed local prototypes header (nt_internal.h → …
|
STAT
|
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10074
|
11 years
|
westram |
* no longer create multiple instances of column-stat-config-window …
|
TEMPLATES
|
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10083
|
11 years
|
westram |
reintegrated branch 'macros2'
|
TOOLS
|
|
10083
|
11 years
|
westram |
reintegrated branch 'macros2'
|
TREEGEN
|
|
9899
|
11 years
|
epruesse |
pass down argc/argv to AW_root::AW_root (for GTK)
GTK will pick its …
|
UNIT_TESTER
|
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10097
|
11 years
|
westram |
* misc changes 4 jenkins
- dont be verbose when building tarball
…
|
util
|
|
10103
|
11 years
|
epruesse |
generate arb-dev.tgz when arb.tgz is built
arb-dev includes all static …
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WETC
|
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10083
|
11 years
|
westram |
reintegrated branch 'macros2'
|
WINDOW
|
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10083
|
11 years
|
westram |
reintegrated branch 'macros2'
|
XML
|
|
9575
|
11 years
|
westram |
- effect of [9574] (comments only)
|
XML_IMPORT
|
|
9574
|
11 years
|
westram |
- show from where dependencies are updated
|
arb_CHANGES.txt
|
12.7 KB
|
10096
|
11 years
|
westram |
* updated version information
* changelog
- updated missing …
|
arb_DEBUG.txt
|
1.2 KB
|
578
|
22 years
|
westram |
* empty log message *
|
arb_install.sh
|
14.3 KB
|
6350
|
14 years
|
westram |
- accept arb.tgz as file (not only as link). Needed if you install ARB …
|
arb_INSTALL.txt
|
3.6 KB
|
8567
|
12 years
|
epruesse |
remove LIBLINK
|
arb_LICENSE.txt
|
10.7 KB
|
8205
|
12 years
|
westram |
merge from stable_5.0 [8203]
* removed molphy (protml)
|
arb_OS_X.txt
|
5.5 KB
|
6214
|
15 years
|
westram |
- updated OS_X info (thx to Matt)
|
arb_OS_X_MacPorts.txt
|
370 bytes
|
6288
|
14 years
|
westram |
* include ALL arb_*.txt into release tarball
* renamed …
|
arb_README.txt
|
5.9 KB
|
8212
|
12 years
|
westram |
merge from stable_5.0 [8207] [8210] [8211]
* refer to ubuntu 10.04 …
|
arb_UBUNTU.txt
|
1.3 KB
|
8871
|
12 years
|
epruesse |
add "time" to required packages for building ARB
|
arbsrc_README.txt
|
210 bytes
|
6288
|
14 years
|
westram |
* include ALL arb_*.txt into release tarball
* renamed …
|
arbsrc_README_gcc.txt
|
2.1 KB
|
7331
|
13 years
|
westram |
- tested and added gcc 4.5.2
|
config.makefile.template
|
1.6 KB
|
9751
|
11 years
|
westram |
- merge from gtk_only [9698] [9749]
|
demo.arb
|
78.9 KB
|
7664
|
13 years
|
westram |
* merge from dev [7509] [7510] [7511] [7514] [7517] [7520] [7524] …
|
Doxyfile
|
62.2 KB
|
9232
|
11 years
|
westram |
* doxygen
- no longer extract private members/methods
- skip …
|
Makefile
|
58.9 KB
|
10105
|
11 years
|
westram |
- tested and enabled gcc 4.8.0 and 4.8.1
|
README
|
717 bytes
|
5390
|
16 years
|
westram |
- TAB-Ex
|