|
Last change
on this file was
11886,
checked in by westram, 11 years ago
|
- reintegrates 'cleanup' into 'trunk'
- adds:
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
905 bytes
|
| Line | |
|---|
| 1 | item:AxML + FastdnaML |
|---|
| 2 | seqtype: N |
|---|
| 3 | itemmeta: A |
|---|
| 4 | itemmethod:(GOTO_LOCAL_DIR ; \ |
|---|
| 5 | arb_export_rates --arb-notify "$RATES" "T 2.0" "Y 1" "$QUICKADD" | GEN_FASTDNAML(infile) && \ |
|---|
| 6 | RUN_IN_WINDOW((cp infile last.infile; time arb_fastdnaml $PROGRAM && $DISPLAY_FUNC)); \ |
|---|
| 7 | RM_LOCAL_FILES(TmpInputFile last.infile) )& |
|---|
| 8 | |
|---|
| 9 | itemhelp:dnaml.help |
|---|
| 10 | |
|---|
| 11 | arg:RATES |
|---|
| 12 | argtype:weights |
|---|
| 13 | arglabel:Select a Weighting Mask |
|---|
| 14 | argchoice:POS_VAR_BY_PAR |
|---|
| 15 | |
|---|
| 16 | arg:PROGRAM |
|---|
| 17 | argtype:choice_menu |
|---|
| 18 | arglabel:Select program to use |
|---|
| 19 | argchoice:AxML:axml |
|---|
| 20 | argchoice:FastdnaML:fastdnaml |
|---|
| 21 | |
|---|
| 22 | arg:QUICKADD |
|---|
| 23 | argtype:choice_menu |
|---|
| 24 | arglabel:Use Quickadd |
|---|
| 25 | argchoice:Yes: |
|---|
| 26 | argchoice:No:Q |
|---|
| 27 | |
|---|
| 28 | arg:DISPLAY_FUNC |
|---|
| 29 | argtype:choice_menu |
|---|
| 30 | arglabel:What to do with the tree? |
|---|
| 31 | argchoice:ARB ('tree_fml_...'):arb_read_tree tree_fml_$$ treefile "PRG=$PROGRAM FILTER=$FILTER RATE=$RATES" |
|---|
| 32 | argchoice:Treetool:treetool treefile |
|---|
| 33 | |
|---|
| 34 | in:TmpInputFile |
|---|
| 35 | informat:genbank |
|---|
| 36 | insave: |
|---|
| 37 | |
|---|
Note: See
TracBrowser
for help on using the repository browser.
