source: trunk/HELP_SOURCE/source/gene_species_field_transfer.hlp

Last change on this file was 18769, checked in by westram, 3 years ago
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1#Please insert up references in the next lines (line starts with keyword UP)
2UP      arb.hlp
3UP      glossary.hlp
4
5#Please insert subtopic references  (line starts with keyword SUB)
6SUB     aci.hlp
7
8# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
9
10#************* Title of helpfile !! and start of real helpfile ********
11TITLE           Define fields exported with gene species
12
13OCCURRENCE      ARB_NT/Export/Export .. to new ARB database/Transfer Species/Source->Target/Define field transfer for gene species
14
15DESCRIPTION     Here you can define which fields (of the origin organism or of the origin gene of
16                a gene species) should be transferred to the new database and how they should be
17                modified.
18
19                To define a new transfer rule, do the following steps:
20
21                - Enter name of created field
22
23                - Choose a creation method
24
25                         If you choose 'Copy from organism/gene' you have to provide a 'Source field'
26                         and you MAY provide an ACI expression.
27
28                         If you choose 'Only use ACI' you have to provide an ACI expression, but
29                         no 'Source field'.
30
31                - Check if the example shows your intended result.
32
33NOTES           The example will be calculated for the gene-species which is selected
34                in the left Hitlist of the 'TRANSFER SPECIES' window.
35
36                The ACI expression applies to the Organism or the Gene if 'Copy from organism/gene'
37                is selected. If 'Only use ACI' is selected it applies to the gene-species.
38
39                Note that it is possible to create hierarchical keys. Simply enter something like
40                'organism/full_name' into the destination field.
41
42EXAMPLES        None
43
44WARNINGS        None
45
46BUGS            When you export gene-species to a new database this database is marked as 'Arb-Genome-Database'.
47                We need to implement some kind of Database-Admin-Tool to change the database type.
48
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