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Changeset 5675

Timestamp:

25/12/08 13:03:21 (3 years ago)

Author:

westram

Message:

removed automatic timestamps (the best they were good for, were vc-conflicts)

Location:

trunk

Files:

: 159 modified

AISC_COM/C/aisc_global.h (modified) (1 diff)
AISC_COM/C/trace.h (modified) (1 diff)
ARBDB/adExperiment.c (modified) (1 diff)
ARBDB/adGene.c (modified) (1 diff)
ARBDB/adGene.h (modified) (1 diff)
ARBDB/ad_config.c (modified) (1 diff)
ARBDB/ad_config.h (modified) (1 diff)
ARBDB/adhashtools.c (modified) (1 diff)
ARBDB/adtcp.c (modified) (1 diff)
ARBDB/arb_assert.h (modified) (1 diff)
ARB_GDE/GDE_awars.h (modified) (1 diff)
ARB_GDE/GDE_extglob.h (modified) (1 diff)
ARB_GDE/GDE_global.h (modified) (1 diff)
ARB_GDE/gde.hxx (modified) (1 diff)
AWT/AWT_advice.cxx (modified) (1 diff)
AWT/AWT_attributes.cxx (modified) (1 diff)
AWT/AWT_changekey.cxx (modified) (1 diff)
AWT/AWT_config_manager.cxx (modified) (1 diff)
AWT/AWT_db_browser.cxx (modified) (1 diff)
AWT/AWT_hotkeys.cxx (modified) (1 diff)
AWT/AWT_input_mask.cxx (modified) (1 diff)
AWT/AWT_item_sel_list.cxx (modified) (1 diff)
AWT/AWT_macro.cxx (modified) (1 diff)
AWT/AWT_translate.cxx (modified) (1 diff)
AWT/awt_advice.hxx (modified) (1 diff)
AWT/awt_attributes.hxx (modified) (1 diff)
AWT/awt_changekey.hxx (modified) (1 diff)
AWT/awt_config_manager.hxx (modified) (1 diff)
AWT/awt_hotkeys.hxx (modified) (1 diff)
AWT/awt_input_mask.hxx (modified) (1 diff)
AWT/awt_item_sel_list.hxx (modified) (1 diff)
AWT/awt_macro.hxx (modified) (1 diff)
AWT/awt_parsimony_defaults.hxx (modified) (1 diff)
AWT/awt_sel_boxes.hxx (modified) (1 diff)
AWT/awt_translate.hxx (modified) (1 diff)
AWTC/AWTC_fast_aligner.cxx (modified) (1 diff)
AWTC/awtc_ClustalV.hxx (modified) (1 diff)
AWTC/awtc_constructSequence.hxx (modified) (1 diff)
AWTC/awtc_next_neighbours.hxx (modified) (1 diff)
AWTC/awtc_seq_search.hxx (modified) (1 diff)
AWTI/awti_export.hxx (modified) (1 diff)
BUGEX/bugex.h (modified) (1 diff)
CONVERTALN/convert.c (modified) (1 diff)
DIST/di_view_matrix.hxx (modified) (1 diff)
EDIT4/ED4_dump.cxx (modified) (1 diff)
EDIT4/ed4_awars.hxx (modified) (1 diff)
EDIT4/ed4_block.hxx (modified) (1 diff)
EDIT4/ed4_extern.hxx (modified) (1 diff)
EDIT4/ed4_search.hxx (modified) (1 diff)
EDIT4/ed4_secedit.hxx (modified) (1 diff)
GDE/MOLPHY/mo_assert.h (modified) (1 diff)
GENOM/EXP.hxx (modified) (1 diff)
GENOM/EXP_interface.cxx (modified) (1 diff)
GENOM/EXP_interface.hxx (modified) (1 diff)
GENOM/EXP_local.hxx (modified) (1 diff)
GENOM/EXP_main.cxx (modified) (1 diff)
GENOM/GEN_tools.cxx (modified) (1 diff)
GENOM/GEN_tools.hxx (modified) (1 diff)
HELP_SOURCE/arb_help.dtd (modified) (1 diff)
HELP_SOURCE/arb_help2xml.cxx (modified) (1 diff)
MERGE/MG_configs.cxx (modified) (1 diff)
MERGE/MG_gene_species.cxx (modified) (1 diff)
MERGE/MG_preserves.cxx (modified) (1 diff)
MERGE/merge.hxx (modified) (1 diff)
MERGE/mg_merge.hxx (modified) (1 diff)
MULTI_PROBE/mp_proto.hxx (modified) (1 diff)
Makefile (modified) (1 diff)
NTREE/NT_MAUS.cxx (modified) (1 diff)
NTREE/NT_dbrepair.cxx (modified) (1 diff)
NTREE/NT_dbrepair.hxx (modified) (1 diff)
NTREE/NT_trackAliChanges.cxx (modified) (1 diff)
NTREE/NT_trackAliChanges.h (modified) (1 diff)
NTREE/nt_concatenate.hxx (modified) (1 diff)
PERL_SCRIPTS/ARBTOOLS/IFTHELP/embl_gen_long_features.pl (modified) (1 diff)
PERL_SCRIPTS/ARBTOOLS/IFTHELP/genbank_gen_long_features.pl (modified) (2 diffs)
PERL_SCRIPTS/ARBTOOLS/raxml2arb.pl (modified) (1 diff)
PERL_SCRIPTS/GENOME/GI.pm (modified) (1 diff)
PERL_SCRIPTS/SAI/SAI.pm (modified) (1 diff)
PERL_SCRIPTS/SPECIES/listMarkedSpecies.pl (modified) (1 diff)
PGT/xm_defs.hxx (modified) (1 diff)
PROBE_DESIGN/probe_match_parser.cxx (modified) (1 diff)
PROBE_DESIGN/probe_match_parser.hxx (modified) (1 diff)
PROBE_SERVER/PROBE_GROUP/pg_main.cxx (modified) (1 diff)
PROBE_SERVER/TREE_MERGE/tree_merge.cxx (modified) (1 diff)
PROBE_SERVER/WORKER/psw_main.cxx (modified) (1 diff)
PROBE_SERVER/common.h (modified) (1 diff)
PROBE_SERVER/global_defs.h (modified) (1 diff)
PROBE_SERVER/mapping.h (modified) (1 diff)
PROBE_SERVER/path_code.h (modified) (1 diff)
PROBE_SERVER/read_config.h (modified) (1 diff)
PROBE_SET/ps_tools.cxx (modified) (1 diff)
PROBE_SET/ps_tools.hxx (modified) (1 diff)
RNA3D/RNA3D_StructureData.hxx (modified) (1 diff)
SECEDIT/SEC_abspos.cxx (modified) (1 diff)
SECEDIT/SEC_abspos.hxx (modified) (1 diff)
SECEDIT/SEC_bonddef.cxx (modified) (1 diff)
SECEDIT/SEC_bonddef.hxx (modified) (1 diff)
SECEDIT/SEC_db.cxx (modified) (1 diff)
SECEDIT/SEC_db.hxx (modified) (1 diff)
SECEDIT/SEC_defs.hxx (modified) (1 diff)
SECEDIT/SEC_drawn_pos.hxx (modified) (1 diff)
SECEDIT/SEC_gc.hxx (modified) (1 diff)
SECEDIT/SEC_graphic.cxx (modified) (1 diff)
SECEDIT/SEC_graphic.hxx (modified) (1 diff)
SECEDIT/SEC_helix.cxx (modified) (1 diff)
SECEDIT/SEC_helix.hxx (modified) (1 diff)
SECEDIT/SEC_io.cxx (modified) (1 diff)
SECEDIT/SEC_iter.hxx (modified) (1 diff)
SECEDIT/SEC_layout.cxx (modified) (1 diff)
SECEDIT/SEC_main.cxx (modified) (1 diff)
SECEDIT/SEC_read.cxx (modified) (1 diff)
SECEDIT/SEC_root.hxx (modified) (1 diff)
SECEDIT/SEC_split.cxx (modified) (1 diff)
SECEDIT/SEC_structure.cxx (modified) (1 diff)
SECEDIT/SEC_toggle.cxx (modified) (1 diff)
SECEDIT/SEC_toggle.hxx (modified) (1 diff)
SECEDIT/secedit_extern.hxx (modified) (1 diff)
SEQ_QUALITY/SQ_GroupData.cxx (modified) (1 diff)
SEQ_QUALITY/SQ_GroupData.h (modified) (1 diff)
SEQ_QUALITY/SQ_ambiguities.h (modified) (1 diff)
SEQ_QUALITY/SQ_functions.cxx (modified) (1 diff)
SEQ_QUALITY/SQ_functions.h (modified) (1 diff)
SEQ_QUALITY/SQ_helix.h (modified) (1 diff)
SEQ_QUALITY/SQ_main.cxx (modified) (1 diff)
SEQ_QUALITY/SQ_physical_layout.h (modified) (1 diff)
SEQ_QUALITY/seq_quality.h (modified) (1 diff)
SL/AW_HELIX/AW_helix.cxx (modified) (1 diff)
SL/AW_HELIX/AW_helix.hxx (modified) (1 diff)
SL/DB_SCANNER/db_scanner.hxx (modified) (1 diff)
SL/FILE_BUFFER/FileBuffer.cxx (modified) (1 diff)
SL/FILE_BUFFER/FileBuffer.h (modified) (1 diff)
SOURCE_TOOLS/grepx.pl (modified) (1 diff)
SOURCE_TOOLS/postcompile.pl (modified) (1 diff)
TEMPLATES/SIG_PF.h (modified) (1 diff)
TEMPLATES/arb_debug.h (modified) (1 diff)
TEMPLATES/arb_version.h (modified) (1 diff)
TEMPLATES/arbtools.h (modified) (1 diff)
TEMPLATES/attributes.h (modified) (1 diff)
TEMPLATES/config_parser.h (modified) (1 diff)
TEMPLATES/inline.h (modified) (1 diff)
TEMPLATES/output.h (modified) (1 diff)
TEMPLATES/perf_timer.h (modified) (1 diff)
TOOLS/arb_help2xml.cxx (modified) (1 diff)
TOOLS/arb_test.cxx (modified) (1 diff)
WINDOW/AW_font_group.cxx (modified) (1 diff)
WINDOW/AW_global_awars.cxx (modified) (1 diff)
WINDOW/AW_position.cxx (modified) (1 diff)
WINDOW/AW_question.cxx (modified) (1 diff)
WINDOW/aw_color_groups.hxx (modified) (1 diff)
WINDOW/aw_def.hxx (modified) (1 diff)
WINDOW/aw_font_group.hxx (modified) (1 diff)
WINDOW/aw_global.hxx (modified) (1 diff)
WINDOW/aw_global_awars.hxx (modified) (1 diff)
WINDOW/aw_position.hxx (modified) (1 diff)
WINDOW/aw_question.hxx (modified) (1 diff)
XML/xml.cxx (modified) (1 diff)
XML/xml.hxx (modified) (1 diff)
lib/dtd/arb_seq_export.dtd (modified) (1 diff)
lib/dtd/arb_tree.dtd (modified) (1 diff)

Legend:

: Unmodified
: Added
: Removed

trunk/AISC_COM/C/aisc_global.h

r4583	r5675
3	3	// File : aisc_global.h //
4	4	// Purpose : //
5		~~// Time-stamp: <Tue May/22/2007 19:30 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in May 2007 //

trunk/AISC_COM/C/trace.h

r4588	r5675
3	3	// File : trace.h //
4	4	// Purpose : //
5		~~// Time-stamp: <Tue May/22/2007 21:06 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in May 2007 //

trunk/ARBDB/adExperiment.c

r5659	r5675
3	3	/* File : adExperiment.c */
4	4	/* Purpose : DB-access on experiments */
5		~~/* Time-stamp: <Wed Dec/17/2008 23:50 MET Coder@ReallySoft.de> */~~
6	5	/* */
7	6	/* Coded by Ralf Westram (coder@reallysoft.de) in December 2008 */

trunk/ARBDB/adGene.c

r5660	r5675
3	3	/* File : adGene.c */
4	4	/* Purpose : Basic gene access functions */
5		~~/* Time-stamp: <Wed Dec/17/2008 11:00 MET Coder@ReallySoft.de> */~~
6	5	/* */
7	6	/* */

trunk/ARBDB/adGene.h

r4714	r5675
3	3	/* File : adGene.h */
4	4	/* Purpose : Specific defines for ARB genome */
5		~~/* Time-stamp: <Mon Jul/09/2007 14:00 MET Coder@ReallySoft.de> */~~
6	5	/* */
7	6	/* */

trunk/ARBDB/ad_config.c

r5660	r5675
3	3	/* File : ad_config.c */
4	4	/* Purpose : handle editor configurations */
5		~~/* Time-stamp: <Wed Dec/17/2008 13:14 MET Coder@ReallySoft.de> */~~
6	5	/* */
7	6	/* */

trunk/ARBDB/ad_config.h

r3825	r5675
3	3	// File : ad_config.h //
4	4	// Purpose : Read/write editor configurations //
5		~~// Time-stamp: <Mon May/23/2005 09:25 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/ARBDB/adhashtools.c

r5660	r5675
3	3	/* File : adhashtools.c */
4	4	/* Purpose : convenience functions for hashes */
5		~~/* Time-stamp: <Wed Dec/17/2008 11:02 MET Coder@ReallySoft.de> */~~
6	5	/* */
7	6	/* Coded by Ralf Westram (coder@reallysoft.de) in July 2007 */

trunk/ARBDB/adtcp.c

r5648	r5675
3	3	/* File : adtcp.c */
4	4	/* Purpose : arb_tcp.dat handling */
5		~~/* Time-stamp: <Fri Dec/12/2008 10:56 MET Coder@ReallySoft.de> */~~
6	5	/* */
7	6	/* Coded by Ralf Westram (coder@reallysoft.de) in April 2007 */

trunk/ARBDB/arb_assert.h

r5291	r5675
3	3	File : arb_assert.h
4	4	Purpose : Global assert macro
5		~~Time-stamp: <Wed Apr/30/2008 19:27 MET Coder@ReallySoft.de>~~
6	5
7	6

trunk/ARB_GDE/GDE_awars.h

r5065	r5675
3	3	// File : GDE_awars.h //
4	4	// Purpose : Declare AWARS used by ARB-GDE-interface //
5		~~// Time-stamp: <Fri Feb/15/2008 12:01 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in January 2008 //

trunk/ARB_GDE/GDE_extglob.h

r5148	r5675
2	2	// //
3	3	// File : GDE_extglob.h //
4		~~// Time-stamp: <Thu Feb/28/2008 15:44 MET Coder@ReallySoft.de> //~~
5	4	// //
6	5	// Institute of Microbiology (Technical University Munich) //

trunk/ARB_GDE/GDE_global.h

r5068	r5675
3	3	// File : GDE_global.h //
4	4	// Purpose : Global data for GDE interface //
5		~~// Time-stamp: <Fri Feb/15/2008 12:25 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/ARB_GDE/gde.hxx

r5070	r5675
3	3	// File : gde.hxx //
4	4	// Purpose : external interface of GDE functionality //
5		~~// Time-stamp: <Fri Feb/15/2008 18:21 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/AWT/AWT_advice.cxx

r5383	r5675
3	3	// File : awt_advice.cpp //
4	4	// Purpose : //
5		~~// Time-stamp: <Fri May/30/2008 12:21 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/AWT_attributes.cxx

r3029	r5675
3	3	// File : AWT_attributes.cxx //
4	4	// Purpose : get attribute colors for species/genes //
5		~~// Time-stamp: <Sun Jul/18/2004 18:43 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/AWT_changekey.cxx

r5656	r5675
3	3	// File : AWT_changekey.cxx //
4	4	// Purpose : changekey management //
5		~~// Time-stamp: <Thu Jun/05/2008 14:52 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/AWT_config_manager.cxx

r5428	r5675
3	3	// File : AWT_config_manager.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Tue Jul/08/2008 13:12 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/AWT_db_browser.cxx

r5428	r5675
3	3	// File : AWT_db_browser.cxx //
4	4	// Purpose : Simple database viewer //
5		~~// Time-stamp: <Tue Jul/08/2008 13:13 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/AWT_hotkeys.cxx

r287	r5675
3	3	// File : AWT_hotkeys.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Sat Aug/18/2001 13:21 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/AWT_input_mask.cxx

r5483	r5675
3	3	// File : AWT_input_mask.cxx //
4	4	// Purpose : General input masks //
5		~~// Time-stamp: <Fri Jul/25/2008 12:35 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/AWT_item_sel_list.cxx

r5330	r5675
3	3	// File : AWT_item_sel_list.cxx //
4	4	// Purpose : selection lists for items (ad_item_selector) //
5		~~// Time-stamp: <Wed May/21/2008 15:54 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/AWT_macro.cxx

r4535	r5675
3	3	// File : AWT_macro.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Fri Apr/27/2007 12:26 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/AWT_translate.cxx

r5660	r5675
3	3	// File : AWT_translate.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Wed Dec/17/2008 13:19 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in June 2006 //

trunk/AWT/awt_advice.hxx

r3492	r5675
3	3	// File : awt_advice.hxx //
4	4	// Purpose : general user advices //
5		~~// Time-stamp: <Tue Dec/21/2004 16:56 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/awt_attributes.hxx

r3030	r5675
3	3	// File : awt_attributes.hxx //
4	4	// Purpose : get attribute colors for species/genes //
5		~~// Time-stamp: <Sun Jul/18/2004 18:43 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/awt_changekey.hxx

r3841	r5675
3	3	// File : AWT_changekey.hxx //
4	4	// Purpose : changekey management //
5		~~// Time-stamp: <Mon May/23/2005 19:57 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/awt_config_manager.hxx

r3086	r5675
4	4	// Purpose : general interface to store/restore //
5	5	// a set of related awars //
6		~~// Time-stamp: <Tue Aug/17/2004 12:07 MET Coder@ReallySoft.de> //~~
7	6	// //
8	7	// //

trunk/AWT/awt_hotkeys.hxx

r312	r5675
3	3	// File : awt_hotkeys.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Tue Oct/02/2001 16:17 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/awt_input_mask.hxx

r4872	r5675
3	3	// File : AWT_input_mask.h //
4	4	// Purpose : General input masks //
5		~~// Time-stamp: <Thu Sep/27/2007 15:08 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/awt_item_sel_list.hxx

r3852	r5675
3	3	// File : AWT_item_sel_list.hxx //
4	4	// Purpose : selection lists for items (ad_item_selector) //
5		~~// Time-stamp: <Mon May/23/2005 19:47 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/awt_macro.hxx

r3896	r5675
3	3	// File : awt_macro.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Wed May/25/2005 17:31 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/awt_parsimony_defaults.hxx

r5475	r5675
3	3	// File : awt_parsimony_defaults.hxx //
4	4	// Purpose : control behavior of parsimony //
5		~~// Time-stamp: <Tue Jul/22/2008 16:25 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/awt_sel_boxes.hxx

r4534	r5675
3	3	// File : awt_sel_boxes.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Fri Apr/20/2007 17:57 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/AWT/awt_translate.hxx

r5601	r5675
3	3	// File : AWT_translate.h //
4	4	// Purpose : //
5		~~// Time-stamp: <Wed Nov/19/2008 11:44 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in June 2006 //

trunk/AWTC/AWTC_fast_aligner.cxx

r5660	r5675
3	3	// File : AWTC_fast_aligner.cxx //
4	4	// Purpose : A fast aligner (not a multiple aligner!) //
5		~~// Time-stamp: <Wed Dec/17/2008 13:19 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in 1998 //

trunk/AWTC/awtc_ClustalV.hxx

r5390	r5675
3	3	// File : awtc_ClustalV.hxx //
4	4	// Purpose : Clustal V //
5		~~// Time-stamp: <Wed Jun/04/2008 09:46 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in June 2008 //

trunk/AWTC/awtc_constructSequence.hxx

r5390	r5675
3	3	// File : awtc_constructSequence.hxx //
4	4	// Purpose : simple sequence assembler (unfinished) //
5		~~// Time-stamp: <Wed Jun/04/2008 10:14 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in 1998 //

trunk/AWTC/awtc_next_neighbours.hxx

r5486	r5675
3	3	// File : awtc_next_neighbours.hxx //
4	4	// Purpose : Search relatives via PT server //
5		~~// Time-stamp: <Sun Jul/27/2008 12:37 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/AWTC/awtc_seq_search.hxx

r5486	r5675
3	3	// File : awtc_seq_search.hxx //
4	4	// Purpose : Fast sequence search for fast aligner //
5		~~// Time-stamp: <Sun Jul/27/2008 13:17 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in July 1998 //

trunk/AWTI/awti_export.hxx

r5390	r5675
3	3	// File : awti_export.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Wed Jun/04/2008 12:56 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in June 2008 //

trunk/BUGEX/bugex.h

r5390	r5675
3	3	// File : bugex.h //
4	4	// Purpose : Debugging code //
5		~~// Time-stamp: <Wed Jun/04/2008 13:19 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/CONVERTALN/convert.c

r4286	r5675
3	3	/* File : convert.c */
4	4	/* Purpose : some helpers for global data handling */
5		~~/* Time-stamp: <Thu Jan/25/2007 12:53 MET Coder@ReallySoft.de> */~~
6	5	/* */
7	6	/* Coded by Ralf Westram (coder@reallysoft.de) in December 2006 */

trunk/DIST/di_view_matrix.hxx

r5421	r5675
2	2	// //
3	3	// File : di_view_matrix.hxx //
4		~~// Time-stamp: <Thu Jul/03/2008 16:21 MET Coder@ReallySoft.de> //~~
5	4	// //
6	5	// Institute of Microbiology (Technical University Munich) //

trunk/EDIT4/ED4_dump.cxx

r2512	r5675
3	3	// File : ED4_dump.cxx //
4	4	// Purpose : Contains dump() methods of ED4-classes //
5		~~// Time-stamp: <Thu Mar/11/2004 13:47 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/EDIT4/ed4_awars.hxx

r5206	r5675
3	3	// File : ed4_awars.hxx //
4	4	// Purpose : edit4 awars //
5		~~// Time-stamp: <Wed Sep/26/2007 09:10 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/EDIT4/ed4_block.hxx

r5390	r5675
3	3	// File : ed4_block.hxx //
4	4	// Purpose : Block operations //
5		~~// Time-stamp: <Thu Jun/05/2008 11:12 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) //

trunk/EDIT4/ed4_extern.hxx

r4807	r5675
3	3	// File : ed4_extern.hxx //
4	4	// Purpose : external interface (e.g. for secedit) //
5		~~// Time-stamp: <Wed Sep/05/2007 18:21 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/EDIT4/ed4_search.hxx

r4843	r5675
3	3	// File : ed4_search.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Sat Sep/01/2007 10:00 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) //

trunk/EDIT4/ed4_secedit.hxx

r4852	r5675
3	3	// File : ed4_secedit.hxx //
4	4	// Purpose : start secondary editor //
5		~~// Time-stamp: <Wed Sep/12/2007 09:41 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/GDE/MOLPHY/mo_assert.h

r2701	r5675
3	3	// File : mo_assert.h //
4	4	// Purpose : defines assert macro //
5		~~// Time-stamp: <Thu May/06/2004 12:18 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/GENOM/EXP.hxx

r5659	r5675
3	3	// File : EXP.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Thu Dec/18/2008 16:20 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/GENOM/EXP_interface.cxx

r5660	r5675
3	3	// File : EXP_interface.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Thu Dec/18/2008 16:52 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/GENOM/EXP_interface.hxx

r290	r5675
3	3	// File : EXP_interface.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Thu Sep/06/2001 20:13 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/GENOM/EXP_local.hxx

r1694	r5675
3	3	// File : EXP_local.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Thu Aug/14/2003 23:09 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/GENOM/EXP_main.cxx

r5428	r5675
3	3	// File : EXP_main.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Wed Jul/09/2008 12:27 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/GENOM/GEN_tools.cxx

r3009	r5675
3	3	// File : GEN_tools.cxx //
4	4	// Purpose : Some helper functions //
5		~~// Time-stamp: <Thu Jul/01/2004 09:08 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/GENOM/GEN_tools.hxx

r3022	r5675
3	3	// File : GEN_tools.hxx //
4	4	// Purpose : general purpose toolkit for genome library //
5		~~// Time-stamp: <Wed Jul/14/2004 12:30 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/HELP_SOURCE/arb_help.dtd

r3613	r5675
3	3	<!-- File : arb_help.dtd -->
4	4	<!-- Purpose : -->
5		~~<!-- Time-stamp: <Thu Feb/03/2005 20:46 MET Coder@ReallySoft.de> -->~~
6	5	<!-- -->
7	6	<!-- -->

trunk/HELP_SOURCE/arb_help2xml.cxx

r5428	r5675
3	3	// File : arb_help2xml.cxx //
4	4	// Purpose : Converts old ARB help format to XML //
5		~~// Time-stamp: <Wed Jul/09/2008 12:38 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/MERGE/MG_configs.cxx

r5625	r5675
3	3	// File : MG_configs.cxx //
4	4	// Purpose : Merge editor configurations //
5		~~// Time-stamp: <Wed Dec/03/2008 10:49 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/MERGE/MG_gene_species.cxx

r5660	r5675
4	4	// Purpose : Transfer fields from organism and gene when //
5	5	// tranferring gene species //
6		~~// Time-stamp: <Wed Dec/17/2008 15:47 MET Coder@ReallySoft.de> //~~
7	6	// //
8	7	// //

trunk/MERGE/MG_preserves.cxx

r5660	r5675
3	3	// File : MG_preserves.cxx //
4	4	// Purpose : find candidates for alignment preservation //
5		~~// Time-stamp: <Wed Dec/17/2008 15:52 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/MERGE/merge.hxx

r5390	r5675
3	3	// File : merge.hxx //
4	4	// Purpose : Local header for usage inside directory MERGE //
5		~~// Time-stamp: <Thu Jun/05/2008 11:26 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/MERGE/mg_merge.hxx

r5168	r5675
3	3	// File : mg_merge.hxx //
4	4	// Purpose : Merge tool external interface //
5		~~// Time-stamp: <Sat Mar/01/2008 12:34 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in March 2008 //

trunk/MULTI_PROBE/mp_proto.hxx

r5390	r5675
3	3	// File : mp_proto.hxx //
4	4	// Purpose : Provide some prototypes //
5		~~// Time-stamp: <Wed Jun/04/2008 13:28 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/Makefile

r5672	r5675
2	2	# #
3	3	# File : Makefile #
4		~~# Time-stamp: <Tue Dec/23/2008 06:27 MET Coder@ReallySoft.de> #~~
5	4	# #
6	5	# Institute of Microbiology (Technical University Munich) #

trunk/NTREE/NT_MAUS.cxx

r5148	r5675
3	3	// File : NT_MAUS.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Thu Feb/28/2008 16:04 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in July 2004 //

trunk/NTREE/NT_dbrepair.cxx

r5660	r5675
3	3	// File : NT_dbrepair.cxx //
4	4	// Purpose : repair database bugs //
5		~~// Time-stamp: <Wed Dec/17/2008 17:52 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in May 2008 //

trunk/NTREE/NT_dbrepair.hxx

r5513	r5675
3	3	// File : NT_dbrepair.hxx //
4	4	// Purpose : repair database bugs //
5		~~// Time-stamp: <Wed Sep/03/2008 15:24 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in May 2008 //

trunk/NTREE/NT_trackAliChanges.cxx

r5309	r5675
3	3	// File : NT_trackAliChanges.cxx //
4	4	// Purpose : Track alignment and sequences changes //
5		~~// Time-stamp: <Fri May/16/2008 11:03 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in June 2007 //

trunk/NTREE/NT_trackAliChanges.h

r4673	r5675
3	3	// File : NT_trackAliChanges.h //
4	4	// Purpose : Track alignment and sequence changes //
5		~~// Time-stamp: <Fri Jun/29/2007 17:31 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in June 2007 //

trunk/NTREE/nt_concatenate.hxx

r5660	r5675
3	3	/* File : nt_concatenate.hxx */
4	4	/* Purpose : Header file for NT_concatenate.cxx */
5		~~/* Time-stamp: <Wed Dec/17/2008 17:33 MET Coder@ReallySoft.de> */~~
6	5	/* Author : Yadhu Kumar (yadhu@mikro.biologie.tu-muenchen.de) */
7	6	/* web site : http://www.arb-home.de/ */

trunk/PERL_SCRIPTS/ARBTOOLS/IFTHELP/embl_gen_long_features.pl

r4924	r5675
5	5	# Purpose : modifies embl feature table for easy scanning #
6	6	# with ARBs ift #
7		~~# Time-stamp: <Fri Mar/18/2005 15:27 MET Coder@ReallySoft.de> #~~
8	7	# #
9	8	# Coded by Ralf Westram (coder@reallysoft.de) in March 2005 #

trunk/PERL_SCRIPTS/ARBTOOLS/IFTHELP/genbank_gen_long_features.pl

r4985	r5675
1
2	1	#!/usr/bin/perl
3	2	# ================================================================ #
…	…
6	5	# Purpose : modifies genbank feature table for easy scanning #
7	6	# with ARBs ift #
8		~~# Time-stamp: <Fri Dec/07/2007 13:28 MET Coder@ReallySoft.de> #~~
9	7	# #
10	8	# Coded by Ralf Westram (coder@reallysoft.de) in November 2007 #

trunk/PERL_SCRIPTS/ARBTOOLS/raxml2arb.pl

r5248	r5675
6	6	# ARB and generate comment containing likelyhood #
7	7	# and content of info file #
8		~~# Time-stamp: <Fri Mar/14/2008 13:09 MET Coder@ReallySoft.de> #~~
9	8	# #
10	9	# Coded by Ralf Westram (coder@reallysoft.de) in March 2008 #

trunk/PERL_SCRIPTS/GENOME/GI.pm

r3044	r5675
3	3	# File : GI.pm #
4	4	# Purpose : Genome import library #
5		~~# Time-stamp: <Thu Aug/05/2004 15:16 MET Coder@ReallySoft.de> #~~
6	5	# #
7	6	# #

trunk/PERL_SCRIPTS/SAI/SAI.pm

r4069	r5675
3	3	# File : SAI.pm #
4	4	# Purpose : Basic SAI access #
5		~~# Time-stamp: <Fri Jun/23/2006 11:55 MET Coder@ReallySoft.de> #~~
6	5	# #
7	6	# Coded by Ralf Westram (coder@reallysoft.de) in June 2006 #

trunk/PERL_SCRIPTS/SPECIES/listMarkedSpecies.pl

r4197	r5675
5	5	# File : markedSpecies.pl #
6	6	# Purpose : list names of species marked in running ARB #
7		~~# Time-stamp: <Fri Oct/13/2006 17:36 MET Coder@ReallySoft.de> #~~
8	7	# #
9	8	# Coded by Ralf Westram (coder@reallysoft.de) in October 2006 #

trunk/PGT/xm_defs.hxx

r3954	r5675
3	3	// File : xm_defs.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Thu Nov/03/2005 17:24 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in November 2005 //

trunk/PROBE_DESIGN/probe_match_parser.cxx

r2984	r5675
3	3	// File : probe_match_parser.cxx //
4	4	// Purpose : parse the results of a probe match //
5		~~// Time-stamp: <Tue Jul/06/2004 13:41 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/PROBE_DESIGN/probe_match_parser.hxx

r5489	r5675
3	3	// File : probe_match_parser.hxx //
4	4	// Purpose : parse the results of a probe match //
5		~~// Time-stamp: <Wed Jul/30/2008 10:41 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/PROBE_SERVER/PROBE_GROUP/pg_main.cxx

r5428	r5675
2	2	// //
3	3	// File : pg_main.cxx //
4		~~// Time-stamp: <Wed Jul/09/2008 12:48 MET Coder@ReallySoft.de> //~~
5	4	// //
6	5	// //

trunk/PROBE_SERVER/TREE_MERGE/tree_merge.cxx

r5264	r5675
3	3	// File : tree_merge.cxx //
4	4	// Purpose : merges multiple trees saved by arb_probe_group_design //
5		~~// Time-stamp: <Thu Feb/12/2004 15:23 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/PROBE_SERVER/WORKER/psw_main.cxx

r5634	r5675
3	3	// File : psw_main.cxx //
4	4	// Purpose : Worker process (handles requests from cgi scripts) //
5		~~// Time-stamp: <Fri Dec/05/2008 16:38 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/PROBE_SERVER/common.h

r5625	r5675
4	4	// Purpose : Common code for all tools //
5	5	// Note : include only once in each executable!!! //
6		~~// Time-stamp: <Mon Dec/01/2008 17:20 MET Coder@ReallySoft.de> //~~
7	6	// //
8	7	// //

trunk/PROBE_SERVER/global_defs.h

r2437	r5675
5	5	// PROBE_GROUP_DESIGN //
6	6	// Note : include only once in each executable!!! //
7		~~// Time-stamp: <Fri Feb/27/2004 17:01 MET Coder@ReallySoft.de> //~~
8	7	// //
9	8	// //

trunk/PROBE_SERVER/mapping.h

r5428	r5675
3	3	// File : mapping.h //
4	4	// Purpose : simple species mapping //
5		~~// Time-stamp: <Wed Jul/09/2008 12:52 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/PROBE_SERVER/path_code.h

r5517	r5675
4	4	// Purpose : node-path en/decoding //
5	5	// Note : include only once in each executable!!! //
6		~~// Time-stamp: <Thu Oct/07/2004 16:00 MET Coder@ReallySoft.de> //~~
7	6	// //
8	7	// //

trunk/PROBE_SERVER/read_config.h

r5383	r5675
3	3	// File : read_config.h //
4	4	// Purpose : reads and provides probe_parameters.conf //
5		~~// Time-stamp: <Fri May/30/2008 12:29 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/PROBE_SET/ps_tools.cxx

r3283	r5675
3	3	// File : ps_tools.cxx //
4	4	// Purpose : remove duplicated code //
5		~~// Time-stamp: <Mon Oct/04/2004 17:50 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/PROBE_SET/ps_tools.hxx

r3283	r5675
3	3	// File : ps_tools.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Mon Oct/04/2004 17:49 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/RNA3D/RNA3D_StructureData.hxx

r4796	r5675
3	3	// File : RNA3D_StructureData.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Sat Aug/25/2007 17:33 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/SECEDIT/SEC_abspos.cxx

r4803	r5675
3	3	// File : SEC_abspos.cxx //
4	4	// Purpose : Encapsulates helix position access //
5		~~// Time-stamp: <Fri Sep/07/2007 09:03 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in July 2007 //

trunk/SECEDIT/SEC_abspos.hxx

r5139	r5675
3	3	// File : sec_abspos.hxx //
4	4	// Purpose : Encapsulates helix position access //
5		~~// Time-stamp: <Fri Sep/07/2007 08:56 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in July 2007 //

trunk/SECEDIT/SEC_bonddef.cxx

r4803	r5675
3	3	// File : SEC_bonddef.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Mon Sep/10/2007 10:55 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in September 2007 //

trunk/SECEDIT/SEC_bonddef.hxx

r4803	r5675
3	3	// File : sec_bonddef.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Mon Sep/10/2007 10:55 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in September 2007 //

trunk/SECEDIT/SEC_db.cxx

r5635	r5675
3	3	// File : SEC_db.cxx //
4	4	// Purpose : db interface //
5		~~// Time-stamp: <Thu Dec/04/2008 15:48 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/SECEDIT/SEC_db.hxx

r5208	r5675
3	3	// File : sec_db.hxx //
4	4	// Purpose : DB interface //
5		~~// Time-stamp: <Wed Mar/05/2008 18:30 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/SECEDIT/SEC_defs.hxx

r4803	r5675
3	3	// File : sec_defs.hxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Thu Sep/06/2007 10:59 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in September 2007 //

trunk/SECEDIT/SEC_drawn_pos.hxx

r4803	r5675
3	3	// File : SEC_drawn_pos.hxx //
4	4	// Purpose : store all drawn positions //
5		~~// Time-stamp: <Thu Aug/23/2007 08:45 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/SECEDIT/SEC_gc.hxx

r5390	r5675
3	3	// File : sec_gc.hxx //
4	4	// Purpose : GC definitions //
5		~~// Time-stamp: <Thu Jun/05/2008 14:07 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in July 2007 //

trunk/SECEDIT/SEC_graphic.cxx

r5635	r5675
3	3	// File : SEC_graphic.cxx //
4	4	// Purpose : GUI for structure window //
5		~~// Time-stamp: <Thu Dec/04/2008 15:49 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/SECEDIT/SEC_graphic.hxx

r4916	r5675
3	3	// File : sec_graphic.hxx //
4	4	// Purpose : interface to structure GUI //
5		~~// Time-stamp: <Wed Oct/31/2007 12:16 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/SECEDIT/SEC_helix.cxx

r5350	r5675
3	3	// File : SEC_helix.cxx //
4	4	// Purpose : helix related things //
5		~~// Time-stamp: <Fri May/23/2008 20:06 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/SECEDIT/SEC_helix.hxx

r4803	r5675
3	3	// File : sec_helix.hxx //
4	4	// Purpose : helix related things //
5		~~// Time-stamp: <Thu Sep/06/2007 10:40 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/SECEDIT/SEC_io.cxx

r4803	r5675
3	3	// File : SEC_io.cxx //
4	4	// Purpose : io-related things //
5		~~// Time-stamp: <Fri Sep/07/2007 09:02 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/SECEDIT/SEC_iter.hxx

r4803	r5675
3	3	// File : SEC_iter.hxx //
4	4	// Purpose : secondary structure iterators //
5		~~// Time-stamp: <Fri Sep/07/2007 09:01 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/SECEDIT/SEC_layout.cxx

r5183	r5675
3	3	// File : SEC_layout.cxx //
4	4	// Purpose : layout size and positions of structure //
5		~~// Time-stamp: <Mon Mar/03/2008 08:28 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/SECEDIT/SEC_main.cxx

r5483	r5675
3	3	// File : SEC_main.cxx //
4	4	// Purpose : main part of SECEDIT //
5		~~// Time-stamp: <Fri Jul/25/2008 14:59 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/SECEDIT/SEC_read.cxx

r5174	r5675
3	3	// File : SEC_read.cxx //
4	4	// Purpose : read structure from declaration string //
5		~~// Time-stamp: <Fri Feb/29/2008 13:55 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/SECEDIT/SEC_root.hxx

r5383	r5675
3	3	// File : SEC_root.hxx //
4	4	// Purpose : secondary structure representation //
5		~~// Time-stamp: <Fri May/30/2008 12:26 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Institute of Microbiology (Technical University Munich) //

trunk/SECEDIT/SEC_split.cxx

r4803	r5675
3	3	// File : SEC_split.cxx //
4	4	// Purpose : split/unsplit loops (aka fold/unfold helices) //
5		~~// Time-stamp: <Fri Sep/07/2007 09:03 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/SECEDIT/SEC_structure.cxx

r4803	r5675
3	3	// File : SEC_structure.cxx //
4	4	// Purpose : general implementation of classes in SEC_root.hxx //
5		~~// Time-stamp: <Mon Sep/17/2007 11:07 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in August 2007 //

trunk/SECEDIT/SEC_toggle.cxx

r5635	r5675
3	3	// File : SEC_toggle.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Fri Dec/05/2008 18:01 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in September 2007 //

trunk/SECEDIT/SEC_toggle.hxx

r5635	r5675
3	3	// File : SEC_toggle.hxx //
4	4	// Purpose : Support for multiple structure //
5		~~// Time-stamp: <Thu Dec/04/2008 15:44 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in September 2007 //

trunk/SECEDIT/secedit_extern.hxx

r4803	r5675
3	3	// File : secedit_extern.hxx //
4	4	// Purpose : external interface //
5		~~// Time-stamp: <Wed Sep/12/2007 09:38 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in July 2007 //

trunk/SEQ_QUALITY/SQ_GroupData.cxx

r5017	r5675
3	3	// File : SQ_GroupData.cxx //
4	4	// Purpose : Classes to store global information about sequences //
5		~~// Time-stamp: <Wed Sep/22/2004 19:02 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SEQ_QUALITY/SQ_GroupData.h

r5017	r5675
3	3	// File : SQ_GroupData.h //
4	4	// Purpose : Classes to store global information about sequences //
5		~~// Time-stamp: <Wed Mar/21/2007 00:16 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SEQ_QUALITY/SQ_ambiguities.h

r5017	r5675
3	3	// File : SQ_ambiguities.h //
4	4	// Purpose : Class used for evaluation of iupac ambiguities //
5		~~// Time-stamp: <Wed Feb/04/2004 14:34 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SEQ_QUALITY/SQ_functions.cxx

r5546	r5675
3	3	// File : SQ_functions.cxx //
4	4	// Purpose : Implementation of SQ_functions.h //
5		~~// Time-stamp: <Wed May/21/2008 19:10 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SEQ_QUALITY/SQ_functions.h

r5546	r5675
3	3	// File : SQ_functions.h //
4	4	// Purpose : Functions used for calculation of alignment quality //
5		~~// Time-stamp: <Fri Oct/01/2004 17:48 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SEQ_QUALITY/SQ_helix.h

r5018	r5675
3	3	// File : SQ_helix.h //
4	4	// Purpose : Class used for calculation of helix layout //
5		~~// Time-stamp: <Mon Sep/17/2007 12:28 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SEQ_QUALITY/SQ_main.cxx

r5546	r5675
3	3	// File : SQ_main.cxx //
4	4	// Purpose : Entrypoint to Seq. Quality analysis; calls funktions //
5		~~// Time-stamp: <Thu Feb/28/2008 16:53 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SEQ_QUALITY/SQ_physical_layout.h

r5017	r5675
3	3	// File : SQ_physical_layout.h //
4	4	// Purpose : Class used for calculation of the phys. layout of seq. //
5		~~// Time-stamp: <Tue Feb/03/2004 14:48 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SEQ_QUALITY/seq_quality.h

r5017	r5675
2	2	// //
3	3	// File : SQ_quality.h //
4		~~// Time-stamp: <Thu Feb/05/2004 11:40 MET Coder@ReallySoft.de> //~~
5	4	// //
6	5	// //

trunk/SL/AW_HELIX/AW_helix.cxx

r4782	r5675
3	3	// File : AW_helix.cxx //
4	4	// Purpose : Wrapper for BI_helix + AW-specific functions //
5		~~// Time-stamp: <Sat Aug/25/2007 21:26 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SL/AW_HELIX/AW_helix.hxx

r4781	r5675
3	3	// File : AW_helix.hxx //
4	4	// Purpose : Wrapper for BI_helix + AW-specific functions //
5		~~// Time-stamp: <Sat Aug/25/2007 20:39 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SL/DB_SCANNER/db_scanner.hxx

r3817	r5675
3	3	// File : db_scanner.hxx //
4	4	// Purpose : ARB database scanner //
5		~~// Time-stamp: <Tue May/24/2005 13:22 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/SL/FILE_BUFFER/FileBuffer.cxx

r5428	r5675
3	3	// File : FileBuffer.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Tue Jul/08/2008 12:42 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in December 2006 //

trunk/SL/FILE_BUFFER/FileBuffer.h

r5489	r5675
3	3	// Copyright (C) 2000
4	4	// Ralf Westram
5		~~// Time-stamp: <Wed Jul/30/2008 10:41 MET Coder@ReallySoft.de>~~
6	5	//
7	6	// Permission to use, copy, modify, distribute and sell this software

trunk/SOURCE_TOOLS/grepx.pl

r5470	r5675
4	4	# File : grepx.pl #
5	5	# Purpose : Replacement for grep (used from emacs) #
6		~~# Time-stamp: <Fri Jul/18/2008 10:17 MET Coder@ReallySoft.de> #~~
7	6	# #
8	7	# (C) November 2005 by Ralf Westram #

trunk/SOURCE_TOOLS/postcompile.pl

r4867	r5675
4	4	# File : postcompile.pl #
5	5	# Purpose : filter gcc shadow spam #
6		~~# Time-stamp: <Thu Sep/27/2007 13:40 MET Coder@ReallySoft.de> #~~
7	6	# #
8	7	# Coded by Ralf Westram (coder@reallysoft.de) in September 2007 #

trunk/TEMPLATES/SIG_PF.h

r2321	r5675
1	1	/* File : SIG_PF.h
2	2	* Purpose : wrapper to include or define stuff needed for SIG_PF
3		* Time-stamp: <Fri Jan/16/2004 17:21 MET Coder@ReallySoft.de>
4	3	*/
5	4

trunk/TEMPLATES/arb_debug.h

r4596	r5675
3	3	// File : arb_debug.h //
4	4	// Purpose : some debugging tools //
5		~~// Time-stamp: <Fri May/18/2007 16:12 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in May 2007 //

trunk/TEMPLATES/arb_version.h

r5477	r5675
3	3	// File : arb_version.h //
4	4	// Purpose : //
5		~~// Time-stamp: <Wed Jul/23/2008 14:38 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in March 2007 //

trunk/TEMPLATES/arbtools.h

r1615	r5675
3	3	// File : arbtools.h //
4	4	// Purpose : small general purpose helper classes //
5		~~// Time-stamp: <Fri Aug/08/2003 07:36 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/TEMPLATES/attributes.h

r5634	r5675
3	3	// File : attributes.h //
4	4	// Purpose : declare attribute macros //
5		~~// Time-stamp: <Fri Dec/05/2008 16:57 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/TEMPLATES/config_parser.h

r5383	r5675
3	3	// File : config_parser.h //
4	4	// Purpose : reads config files //
5		~~// Time-stamp: <Fri May/30/2008 12:29 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/TEMPLATES/inline.h

r5437	r5675
3	3	// File : inline.h //
4	4	// Purpose : general purpose inlined funcions //
5		~~// Time-stamp: <Thu Jul/10/2008 11:57 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/TEMPLATES/output.h

r5124	r5675
3	3	// File : output.h //
4	4	// Purpose : class for indented output to FILE //
5		~~// Time-stamp: <Wed Feb/27/2008 19:38 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/TEMPLATES/perf_timer.h

r3396	r5675
3	3	// File : perf_timer.h //
4	4	// Purpose : Simple performance timer using clock() //
5		~~// Time-stamp: <Thu Nov/18/2004 13:55 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/TOOLS/arb_help2xml.cxx

r329	r5675
3	3	// File : arb_help2xml.cxx //
4	4	// Purpose : Converts old ARB help format to XML //
5		~~// Time-stamp: <Wed Oct/24/2001 13:17 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/TOOLS/arb_test.cxx

r5635	r5675
6	6	// overwrite and checkin this. //
7	7	// //
8		~~// Time-stamp: <Fri Dec/05/2008 19:47 MET Coder@ReallySoft.de> //~~
9	8	// //
10	9	// Coded by Ralf Westram (coder@reallysoft.de) in May 2008 //

trunk/WINDOW/AW_font_group.cxx

r4799	r5675
3	3	// File : AW_font_group.cxx //
4	4	// Purpose : Bundles a group of fonts and provides overall maximas //
5		~~// Time-stamp: <Wed Sep/19/2007 13:28 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/WINDOW/AW_global_awars.cxx

r2512	r5675
3	3	// File : AW_global_awars.cxx //
4	4	// Purpose : Make some awars accessible from ALL arb applications //
5		~~// Time-stamp: <Thu Mar/11/2004 13:39 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in January 2003 //

trunk/WINDOW/AW_position.cxx

r4757	r5675
3	3	// File : AW_position.cxx //
4	4	// Purpose : Positions, Vectors and Angles //
5		~~// Time-stamp: <Fri Sep/07/2007 11:45 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in July 2007 //

trunk/WINDOW/AW_question.cxx

r5483	r5675
3	3	// File : aw_question.cpp //
4	4	// Purpose : //
5		~~// Time-stamp: <Fri Jul/25/2008 12:30 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/WINDOW/aw_color_groups.hxx

r3505	r5675
3	3	// File : aw_color_groups.cxx //
4	4	// Purpose : //
5		~~// Time-stamp: <Tue Dec/21/2004 16:56 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in June 2001 //

trunk/WINDOW/aw_def.hxx

r3589	r5675
3	3	// File : aw_def.hxx //
4	4	// Purpose : WINDOW library global defines //
5		~~// Time-stamp: <Thu Jan/20/2005 14:43 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/WINDOW/aw_font_group.hxx

r4798	r5675
3	3	// File : aw_font_group.hxx //
4	4	// Purpose : Bundles a group of fonts and provides overall maximas //
5		~~// Time-stamp: <Sat Sep/01/2007 17:21 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/WINDOW/aw_global.hxx

r4832	r5675
3	3	// File : aw_global.hxx //
4	4	// Purpose : global functions from WINDOWS lib //
5		~~// Time-stamp: <Sat Aug/18/2007 21:47 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/WINDOW/aw_global_awars.hxx

r1064	r5675
3	3	// File : aw_global_awars.hxx //
4	4	// Purpose : define awars available in ALL arb applications //
5		~~// Time-stamp: <Fri Jan/24/2003 17:41 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/WINDOW/aw_position.hxx

r4865	r5675
3	3	// File : aw_position.hxx //
4	4	// Purpose : Positions, Vectors and Angles //
5		~~// Time-stamp: <Thu Sep/27/2007 11:48 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// Coded by Ralf Westram (coder@reallysoft.de) in July 2007 //

trunk/WINDOW/aw_question.hxx

r3505	r5675
3	3	// File : aw_question.hxx //
4	4	// Purpose : Functions to ask questions to user //
5		~~// Time-stamp: <Tue Dec/21/2004 16:56 MET Coder@ReallySoft.de> //~~
6	5	// //
7	6	// //

trunk/XML/xml.cxx

r4091	r5675
3	3	// Copyright (C) 2000
4	4	// Ralf Westram
5		~~// Time-stamp: <Mon Jun/26/2006 15:41 MET Coder@ReallySoft.de>~~
6	5	//
7	6	// Permission to use, copy, modify, distribute and sell this software

trunk/XML/xml.hxx

r5124	r5675
3	3	// Copyright (C) 2001
4	4	// Ralf Westram
5		~~// Time-stamp: <Wed Feb/27/2008 16:43 MET Coder@ReallySoft.de>~~
6	5	//
7	6	// Permission to use, copy, modify, distribute and sell this software

trunk/lib/dtd/arb_seq_export.dtd

r721	r5675
3	3	<!-- File : arb_seq_export.dtd -->
4	4	<!-- Purpose : DTD for ARB sequence export -->
5		~~<!-- Time-stamp: <Wed Jul/03/2002 16:20 MET Coder@ReallySoft.de> -->~~
6	5	<!-- -->
7	6	<!-- Coded by Ralf Westram (coder@reallysoft.de) in July 2002 -->

trunk/lib/dtd/arb_tree.dtd

r1556	r5675
3	3	<!-- File : arb_tree.dtd -->
4	4	<!-- Purpose : DTD for ARB tree export -->
5		~~<!-- Time-stamp: <Thu Jul/31/2003 14:17 MET Coder@ReallySoft.de> -->~~
6	5	<!-- -->
7	6	<!-- -->