Changeset 5894 for trunk/ALIV3

Timestamp:

07/05/09 19:24:04 (3 years ago)

Author:

westram

Message:

• reactivated original GB_close
• removed GB_exit (use GB_close)
• gb_delete_entry now takes and invalidates a GBDATA** (to avoid further undetected usage)
• gb_do_callback_list called with GB_MAIN_TYPE (instead of possibly already deleted gb_main)
• added some missing transactions
• moved declaration of GBDATA into arbdb_base.h (and include where needed)
• GB_MAIN_TYPE is no longer void
• AW_default is no longer void
• replaced the 3 differing ways to exit EDIT4 by ED4_exit()
• added AW_root::unlink_awars_from_DB() and call in arb_ntree, arb_dist, arb_edit4, arb_pars and arb_phylo
• rewrote arb_2_ascii, arb_2_bin, arb_perf_test, arb_read_tree (single exit point, error handling)
• unlinked AWARs now return "" not "?????"
• AW_awar::read_string works only with awars of type AW_STRING. Added assertion + fixed one wrong usage.
• inlined AW_awar::get()
• added AW_awar::remove_all_callbacks() and AW_awar::remove_all_target_vars()

Files:

• trunk/ALIV3/a3_arbdb.cxx (modified) (2 diffs)

trunk/ALIV3/a3_arbdb.cxx

@@ -15 +15 @@
 // -----------------------------------------------------------------------------
 {
-    if (gb_main)    GB_exit(gb_main);
+    if (gb_main)    GB_close(gb_main);
     if (alignment)  free ((char *) alignment);
 }
@@ -43 +43 @@
 
 // -----------------------------------------------------------------------------
-    void A3Arbdb::close ( void )
+void A3Arbdb::close ( void )
 // -----------------------------------------------------------------------------
 {
-   GB_exit(gb_main);
-   freeset(alignment, 0);
+    GB_close(gb_main);
+    freeset(alignment, 0);
 }