Changeset 6141 for trunk/NTREE/AP_consensus.cxx

Timestamp:

14/08/09 16:29:27 (3 years ago)

Author:

westram

Message:

• spellchecked all (phew)

Files:

• trunk/NTREE/AP_consensus.cxx (modified) (7 diffs)

trunk/NTREE/AP_consensus.cxx

@@ -33 +33 @@
  * Dependencies:       Needs consens.fig and CON_groups.fig
  *
- * Description: This module calculates the consensus of sequencies of
+ * Description: This module calculates the consensus of sequences of
  *              bases or amino acids. The result can be one or more lines
  *              of characters and it is written to the extended data of
@@ -83 +83 @@
  * Description:       This function creates one or more result strings out
  *                    of table statistic. Memory for result is allocated
- *                    and later freeded in function CON_calculate_cb
+ *                    and later freed in function CON_calculate_cb
  *
  * NOTE:              Usage of groupflags and groupnames see function
@@ -510 +510 @@
         {
             int group2=1;
-            float highest=0,relativ;
+            float highest=0,relative;
             int diffchar;
             if (absolutrow[col]){
                 while( (diffchar=neworder[group2++]) ){
-                    relativ=(float)statistic[diffchar][col]
+                    relative=(float)statistic[diffchar][col]
                         /(float)absolutrow[col];
-                    if(relativ>highest) highest=relativ;
-                    additional[diffchar][col]=relativ;
+                    if(relative>highest) highest=relative;
+                    additional[diffchar][col]=relative;
                 }
                 additional[0][col]=highest;
@@ -525 +525 @@
         }
 
-        GBDATA *gb_relativ=GB_search(gb_graph,"MAX",GB_FLOATS);
-        err=GB_write_floats(gb_relativ,additional[0],maxalignlen);
+        GBDATA *gb_relative=GB_search(gb_graph,"MAX",GB_FLOATS);
+        err=GB_write_floats(gb_relative,additional[0],maxalignlen);
 
         for(group=1;group<numdiffchars;group++)
@@ -533 +533 @@
             if (ch <'A' || ch>'Z') continue;
             sprintf(charname,"N%c",ch);
-            gb_relativ=GB_search(gb_graph,charname,GB_FLOATS);
-            err=GB_write_floats(gb_relativ,additional[group],maxalignlen);
+            gb_relative=GB_search(gb_graph,charname,GB_FLOATS);
+            err=GB_write_floats(gb_relative,additional[group],maxalignlen);
         }
 
@@ -628 +628 @@
 
 
-        /* creating the table for characters and allocating memory for 'statistc' */
+        /* creating the table for characters and allocating memory for 'statistic' */
         int *statistic[MAX_AMINOS+1];
         int  convtable[256];
@@ -895 +895 @@
  * Function:           CON_calc_max_freq_cb( AW_window *aw)
  *
- * Description:       Gets the maximum frequence for each columns.
+ * Description:       Gets the maximum frequency for each columns.
  *
  * NOTE: