Changeset 6141 for trunk/NTREE/ad_transpro.cxx

Timestamp:

14/08/09 16:29:27 (3 years ago)

Author:

westram

Message:

• spellchecked all (phew)

Files:

• trunk/NTREE/ad_transpro.cxx (modified) (4 diffs)

trunk/NTREE/ad_transpro.cxx

@@ -338 +338 @@
 #define SYNC_LENGTH 4
 // every X in amino-alignment, it represents 1 to 3 bases in DNA-Alignment
-// SYNC_LENGTH is the # of codons which will be syncronized (ahead!)
+// SYNC_LENGTH is the # of codons which will be synchronized (ahead!)
 // before deciding "X was realigned correctly"
 
@@ -505 +505 @@
                                 delete sync_possible_with_catchup;
                                 failed = 1;
-                                fail_reason = "Can't syncronize after 'X'";
+                                fail_reason = "Can't synchronize after 'X'";
                                 break;
                             }
@@ -521 +521 @@
                         else if (!synchronizeCodons(protein, d, x_count, x_count*3, &catchUp, allowed_code, allowed_code_left)) {
                             failed = 1;
-                            fail_reason = "Can't syncronize after 'X'";
+                            fail_reason = "Can't synchronize after 'X'";
                             break;
                         }
@@ -641 +641 @@
             nt_assert(strlen(buffer) == (unsigned)ali_len);
 
-            // re-alignment sucessfull
+            // re-alignment successful
             error             = GB_write_string(gb_dest_data, buffer);
             if (!error) error = GBT_write_string(gb_species, "codon_start", "1"); // after re-alignment codon_start is always 1