Changeset 6668 for trunk/PROBE_COM/PT.aisc

Timestamp:

26/05/10 19:01:23 (2 years ago)

Author:

westram

Message:

• moved match visualization ("GUCACGGCU-=NN=====g=-CAGCAGCCC") from match_string() (aisc:MATCH_STRING) to get_match_overlay()
• removed redundant calculation of wmis/wmismatches (MATCHLIST_WMISMATCHES)
• added rpc hook for get_match_overlay() to PT.aisc (MATCHLIST_OVERLAY)
• removed rpc hook for unused variable is_member (MATCHLIST_IS_MEMBER)

(thx to elmar)

Files:

• trunk/PROBE_COM/PT.aisc (modified) (2 diffs)

trunk/PROBE_COM/PT.aisc

@@ -172 +172 @@
     double,     wmismatches,    t,    r,    ,       WMISMATCHES,    16,     ,      (~number of weighted mismatches~);
     int,        N_mismatches,   t,    r,    ,       N_MISMATCHES,   17,     ,      (~number of 'N' mismatches~);
-    int,        is_member,      t,    r,    ,       IS_MEMBER,      18,     ,      (~member of group~);
+#    int,        is_member,      t,    r,    ,       IS_MEMBER,      18,     ,      (~member of group~);
     double,     dt,             t,    r,    ,       DT,             19,     ,      (~the dt of a probe~);
     char,       sequence,       l,    r,    ,       SEQUENCE,       22,     ,      (~path of probe~);
@@ -178 +178 @@
 #    aisc_string,get_match_hinfo,%,    r,    ,       INFO_HEADER,    26,     ,      (~the combined info text of _one_ probe match (header)~);
 #    aisc_string,get_match_info, %,    r,    ,       INFO,           27,     ,      (~the combined info text of _one_ probe match~);
+    aisc_string,get_match_overlay,%,  r,    ,       OVERLAY,        28,     ,      (~ascii visualization of match~);
 };