root/branches/stable_5.0

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Rev Chgset Date Author Log Message
(edit) @8301 [8301] 2 months westram * fixed some realigner bugs - when species did not contain …
(edit) @8215 [8215] 3 months westram - guard truncated probe match against misunderstandings - increase match …
(edit) @8213 [8213] 3 months westram * update
(edit) @8211 [8211] 3 months westram
(edit) @8210 [8210] 3 months westram - drop suse version
(edit) @8209 [8209] 3 months westram Auto version upgrade to 5.3 by devel@…
(edit) @8208 [8208] 3 months westram * arb 5.3 changes
(edit) @8207 [8207] 3 months westram - 10.04
(edit) @8206 [8206] 3 months westram - added BRANCH_STATE
(edit) @8204 [8204] 3 months westram merge from trunk part of [7900] - fixed target 'savetest' - perl2arb …
(edit) @8203 [8203] 3 months westram - removed molphy (protml)
(edit) @7758 [7758] 7 months westram - patches for clang-compiler (thx to Matt)
(edit) @7757 [7757] 7 months westram - added gcc 4.4.3 to stable
(edit) @7738 [7738] 7 months westram - merge from trunk [7737]
(edit) @7590 [7590] 9 months westram - if ARB can't write to /tmp, it terminated with 'unknown error'
(edit) @7490 [7490] 10 months westram merged [7489] to stable
(edit) @7487 [7487] 10 months westram * removed debug prints * removed wrong escape
(edit) @7486 [7486] 10 months westram based on a …
(edit) @7292 [7292] 11 months westram - backport of buffer overflow fix from [7290]
(edit) @7199 [7199] 12 months westram - backport of [7198]
(edit) @7132 [7132] 12 months westram - merged [7131] to stable
(edit) @7113 [7113] 12 months westram - merge [7112] from tags/arb_5.2 to stable
(edit) @7061 [7061] 16 months westram - backport of [7060]
(edit) @7033 [7033] 16 months arb_build - remove _index.html in clean (automatic builds were still failing)
(edit) @7028 [7028] 16 months westram - remove svn ignore (fixes NDEBUG build)
(edit) @7023 [7023] 16 months westram * grml
(edit) @7022 [7022] 16 months westram * merged [7016] [7017] [7018] [7021] from trunk
(edit) @7020 [7020] 16 months westram * merged [6189] [7015] from trunk
(edit) @7019 [7019] 16 months westram * backported [7013]
(edit) @6779 [6779] 17 months arb_build Auto version upgrade to 5.2 by devel@…
(edit) @6778 [6778] 17 months westram - merged [6377]+[6465]
(edit) @6777 [6777] 17 months westram - missing dependency
(edit) @6776 [6776] 17 months westram - merged [6775] from trunk
(edit) @6773 [6773] 17 months westram - updated changelog
(edit) @6772 [6772] 17 months westram - merged r6770:6771 from trunk
(edit) @6769 [6769] 17 months westram - merged r6765:6768 to stable (replaces sablotron with xsltproc)
(edit) @6589 [6589] 22 months westram - backport [6588]
(edit) @6521 [6521] 2 years westram * added COMPILE_ASSERT * assert correct pointersizes for PT-server
(edit) @6519 [6519] 2 years westram - quick save errors were dropped (no quicksave happened)
(edit) @6487 [6487] 2 years westram - backport [6486]
(edit) @6419 [6419] 2 years westram - backport [6418]
(edit) @6358 [6358] 2 years westram - backport [6353], [6354] and [6357]
(edit) @6351 [6351] 2 years westram - backport [6350]
(edit) @6341 [6341] 2 years westram - backport [6340]
(edit) @6339 [6339] 2 years westram - backport [6338]
(edit) @6289 [6289] 2 years westram - backport [6288]
(edit) @6287 [6287] 2 years westram - backport [6285] [6286]
(edit) @6258 [6258] 2 years westram - backport [6256]
(edit) @6240 [6240] 2 years westram - backport [6239]
(edit) @6237 [6237] 2 years westram * backport [6236]
(edit) @6215 [6215] 2 years westram - merged [6214]
(edit) @6213 [6213] 2 years arb_build Auto version upgrade to 5.1 by devel@…
(edit) @6212 [6212] 2 years westram - bugfixes for arb_5.1
(edit) @6210 [6210] 2 years westram * arb_install.sh - check for arb.32.*.tgz / arb.64.*.tgz (no longer …
(edit) @6204 [6204] 2 years westram * GB_dump - if content read from DB is NULL, check for exported error
(edit) @6203 [6203] 2 years westram * fixed bug in createDataFromConsensus - wrote string with wrong size …
(edit) @6202 [6202] 2 years westram * backport [6198] + [6199]
(edit) @6196 [6196] 2 years westram * build instruction for OSX (thx to Matt Cottrell)
(edit) @6195 [6195] 2 years westram * repaired, tree and compression optimized
(edit) @6194 [6194] 2 years westram * missing transaction
(edit) @6193 [6193] 2 years westram * do not try to optimize alignments with no data (crashed)
(edit) @6185 [6185] 2 years westram * backport [6184]
(edit) @6182 [6182] 2 years arb_build Auto version upgrade to 5.0 by devel@…
(edit) @6181 [6181] 2 years westram * backport [6180]
(edit) @6178 [6178] 2 years westram * ignores
(edit) @6177 [6177] 2 years westram * moved trace code into SH/arb_trace * redirect stderr into log
(edit) @6176 [6176] 2 years westram * added breakpoint to malloc_error_break (OSX) * more detailed info * …
(edit) @6171 [6171] 2 years westram * backport [6170]
(edit) @6169 [6169] 2 years westram * backport [6167]
(edit) @6165 [6165] 2 years westram * backport [6164]
(edit) @6163 [6163] 2 years westram * backport [6161] + [6162]
(edit) @6159 [6159] 2 years westram * backport [6157]
(edit) @6156 [6156] 2 years westram * backport [6155]
(edit) @6154 [6154] 2 years westram * backport [6153]
(edit) @6152 [6152] 2 years arb_build Auto version upgrade to 4.43 by devel@…
(edit) @6149 [6149] 2 years westram * merged [6145], [6146], [6147] and [6148]
(edit) @6144 [6144] 2 years arb_build Auto version upgrade to 4.42 by devel@…
(edit) @6143 [6143] 2 years westram * backport [6141] (parts changing code, but only strings and comments)
(edit) @6142 [6142] 2 years westram * backport [6141] (parts not affecting code at all, i.e. helpfiles, figs, …
(edit) @6139 [6139] 2 years westram * backport [6137] + [6138]
(edit) @6132 [6132] 2 years westram * backporting parts of [6131]. Fixes truncated helpfiles for release (e.g. …
(copy) @6130 [6130] 3 years arb_build * branch rc for arb_5.0
copied from trunk:
(edit) @6129 [6129] 3 years arb_build * fix for [6116]
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