root/trunk/AWTC

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Rev Chgset Date Author Log Message
(edit) @8744 [8744] 4 days westram * AISC clients - client-handles for server-side objects are …
(edit) @8661 [8661] 4 weeks westram - scaling awar (next neighbour search) was defined at wrong place …
(edit) @8614 [8614] 5 weeks westram merge from e4fix [8168] [8169] [8170] [8171] [8178] [8180] [8181] [8182] …
(edit) @8574 [8574] 6 weeks westram * [8567] failed on WCs where shared libs were up-to-date, but not yet …
(edit) @8536 [8536] 2 months westram * next neighbour search can report errors to client - reports error if …
(edit) @8535 [8535] 2 months westram * scaling of relative scores in 'Next neighbour search' can be configured …
(edit) @8534 [8534] 2 months westram * fixed absolute score limit (17.5 was interpreted as 17.0)
(edit) @8533 [8533] 2 months westram * simplified TEST_SLOW_PT_FamilyFinder - tested too many cases - …
(edit) @8531 [8531] 2 months westram * added header with global defines for ptserver and its clients - …
(edit) @8530 [8530] 2 months westram * ptserver now can filter found relatives by minimum score - allow to …
(edit) @8528 [8528] 2 months westram * sort equally scored relatives by pt-server-internal species-index …
(edit) @8522 [8522] 2 months westram * again fixed relative score calculation (see [8520]) - now uses …
(edit) @8520 [8520] 2 months westram * fixed wrong relative score calculation - if the source sequence …
(edit) @8519 [8519] 2 months westram * next-relative-search - collect all occurring oligos - perform …
(edit) @8517 [8517] 2 months westram * added next-relative-search-tests for short oligos (occurring repeatedly …
(edit) @8313 [8313] 5 months westram * removed dead code
(edit) @8309 [8309] 5 months westram * moved much code into static scope
(edit) @8100 [8100] 7 months westram merge from ptpan_back [8016] [8017] [8021] [8051] [8067] * added method …
(edit) @7916 [7916] 9 months westram * removed AWAR_DTREE_REFRESH (-> AWAR_TREE_REFRESH) * DRYed …
(edit) @7803 [7803] 10 months westram merge from dev [7716] [7732] [7733] [7734] [7735] * script to add+remove …
(edit) @7801 [7801] 10 months westram merge from dev [7710] * resolve some nesting in library dependencies …
(edit) @7800 [7800] 10 months westram merge from dev [7687] [7692] [7693] [7694] [7695] [7697] [7706] [7707] …
(edit) @7770 [7770] 10 months westram merge from dev [7679] [7683] [7684] [7685] [7686] * ARBDB -> CORE - …
(edit) @7623 [7623] 12 months westram - merge from dev [7450] [7452] [7456] [7457] [7458] [7459] [7460] [7461] …
(edit) @7415 [7415] 14 months westram merged from dev [7395] [7396] [7397] [7398] [7399] [7400] [7401] [7402] …
(edit) @7414 [7414] 14 months westram merged from dev [7373] [7375] [7376] [7377] [7378] [7379] [7380] [7381] …
(edit) @7337 [7337] 14 months westram * possibility to toggle the TODO-warnings via config.makefile
(edit) @7318 [7318] 14 months westram typos
(edit) @7316 [7316] 14 months westram merged from dev [7283] [7285] [7297] [7298] [7299] [7305] [7306] [7307] …
(edit) @7314 [7314] 14 months westram merged from dev [7300] [7301] [7309] [7310] * move to CORE - …
(edit) @7248 [7248] 15 months westram merged from dev [7242] [7243] [7245] * next-relative search in NTREE may …
(edit) @7247 [7247] 15 months westram merged from dev [7225] [7226] [7233] [7229] [7230] [7231] [7232] [7234] …
(edit) @7200 [7200] 15 months westram - fixed compile conditionals for UNIT_TESTS
(edit) @7197 [7197] 15 months westram - reproduce report of wrong position for designed probe in unittest. - …
(edit) @7190 [7190] 15 months westram merges [7164] [7165] [7166] [7167] [7168] [7169] [7170] from refactor * …
(edit) @7183 [7183] 15 months westram merges [7084] [7086] [7087] [7088] from refactor * added CORE lib - …
(edit) @7177 [7177] 15 months westram merges [7054] [7055] [7057] [7058] [7059] [7062] from refactor * added …
(edit) @7172 [7172] 15 months westram merged [6787] [6803] [6941] [6944] [6947] [7064] [7065] * ptserver tests …
(edit) @6868 [6868] 21 months westram - updated prototypes and dependencies
(edit) @6867 [6867] 21 months westram * ARB GUI (merges [6844] [6845] [6847] [6858] [6861] from refactor) * new …
(edit) @6866 [6866] 21 months westram * compiler-messages (merges [6848] [6849] [6850] [6851] [6853] [6855] …
(edit) @6865 [6865] 21 months westram * loosened dependencies between libraries (merges [6820] [6828] [6830] …
(edit) @6863 [6863] 21 months westram * unit-test improvements (merged [6819] [6821] [6822] [6823] [6824] [6826] …
(edit) @6817 [6817] 21 months westram - depends for [6816]
(edit) @6814 [6814] 21 months westram * depends updated for [6812] + [6813]
(edit) @6750 [6750] 21 months westram - sync with refactor branch (branching sux)
(edit) @6724 [6724] 21 months westram * do not send uninitialized bytes to servers via …
(edit) @6720 [6720] 21 months westram * added TEST for PT_FamilyFinder (pt-server test) * added similarity …
(edit) @6714 [6714] 21 months westram * added GBS_nameserver_tag() and GBS_ptserver_tag()
(edit) @6713 [6713] 21 months westram * removed duplicated unnecessary definition of aisc_com
(edit) @6703 [6703] 21 months westram * generate client.h without 'extern "C" {}'-wrapper, instead only use …
(edit) @6698 [6698] 22 months westram - "fixed" crash when aligning multiple species against PT-Server …
(edit) @6691 [6691] 22 months westram * allow failures in fast_aligner - added 'Continue on error' toggle and …
(edit) @6688 [6688] 22 months westram * added unit tests for aligner (covering selection of targets and …
(edit) @6687 [6687] 22 months westram * renamed - AWTC_FIND_FAMILY into PT_FamilyFinder - …
(edit) @6686 [6686] 22 months westram * changed interface of AWTC_FIND_FAMILY (moved several params of …
(edit) @6527 [6527] 2 years westram - ignore *.gcda *.gcno
(edit) @6503 [6503] 2 years westram [static check] - some fixes / assertions added
(edit) @6490 [6490] 2 years westram * moved a few types to arbdb_base.h * only use arbdb_base.h or arbdb.h …
(edit) @6448 [6448] 2 years westram - added library dependency declarations
(edit) @6426 [6426] 2 years westram - ... and filenames
(edit) @6423 [6423] 2 years westram * removed dependency of AWTC from GLOBAL_gb_main
(edit) @6404 [6404] 2 years westram * move AWT/AWT_sel_boxes.cxx/AWT_edit to WINDOW/AW_edit.cxx/AW_edit …
(edit) @6385 [6385] 2 years westram - removed trailing whitespace
(edit) @6383 [6383] 2 years westram - removed void
(edit) @6381 [6381] 2 years westram - fixed includes - added MBI headers - removed unused files
(edit) @6374 [6374] 2 years westram * fixed doxygen-alike comments - either use explicit qt-style triggers …
(edit) @6366 [6366] 2 years westram * fixed whitespace (scripted)
(edit) @6352 [6352] 2 years westram - condensed several comments
(edit) @6347 [6347] 2 years westram Moved a lot of dead code to where it belongs: into the depths of SVN. I …
(edit) @6345 [6345] 2 years westram - fixed hard readable '} else {'
(edit) @6331 [6331] 2 years westram * removed GB_strdup * moved freeset, nulldup, etc to own header …
(edit) @6277 [6277] 3 years westram * ARB_ERROR (drop-in replacement for GB_ERROR) - checks for unused and …
(edit) @6268 [6268] 3 years westram - unused
(edit) @6267 [6267] 3 years westram * move some fast-aligner-related code to SL/FAST_ALIGNER - …
(edit) @6209 [6209] 3 years westram - dependencies updated
(edit) @6141 [6141] 3 years westram * spellchecked all (phew)
(edit) @6127 [6127] 3 years westram - added some comment-pointers about code-dependencies
(edit) @6101 [6101] 3 years westram * fix warning "format not a string literal and no format arguments" - …
(edit) @5999 [5999] 3 years westram * reuse colorset save/load window for identical item selectors * unique …
(edit) @5968 [5968] 3 years westram * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
(edit) @5885 [5885] 3 years westram * moved fast-aligner to separate library
(edit) @5842 [5842] 3 years westram * like [5839], but AWT, AWTC, AWTI and WINDOW
(edit) @5825 [5825] 3 years westram * replaced GB_entry/GB_create/GB_search+GB_read_XXX by GBT_read_XXX * …
(edit) @5782 [5782] 3 years westram * fixed spelling of 'occurrence'
(edit) @5725 [5725] 3 years westram * removed useless macros: - GB_STRDUP (easily taken for GB_strdup) …
(edit) @5709 [5709] 3 years westram - made depends for [5708]
(edit) @5675 [5675] 3 years westram - removed automatic timestamps (the best they were good for, were …
(edit) @5660 [5660] 3 years westram - generally use GBT_read_name() where possible - recoded several …
(edit) @5655 [5655] 3 years westram * GBT_read_name: - returns 'const char *' now - never returns NULL …
(edit) @5648 [5648] 3 years westram * moved AWT_get_full_path() + AWT_concat_full_path() to ARBDB * rewrote …
(edit) @5635 [5635] 3 years westram * class GB_transaction: * replaced abort() by close(error). close() is …
(edit) @5625 [5625] 3 years westram * added convenience functions: - GB_end_transaction() …
(edit) @5604 [5604] 4 years westram - argh.. reverted [5603]
(edit) @5603 [5603] 4 years westram - dependencies updated
(edit) @5545 [5545] 4 years westram from elmar: Add a parameter to the PT server that allows limiting the …
(edit) @5540 [5540] 4 years westram - prototypes and dependencies updated
(edit) @5506 [5506] 4 years westram - transaction around AWTC_aligner -> undo all in case of error (Ctrl-A …
(edit) @5497 [5497] 4 years westram * AWTC/AWTC_ClustalV.cxx: - reactivated debug code - fixed several …
(edit) @5495 [5495] 4 years westram * AWTC/AWTC_ClustalV.cxx: - replaced hardcoded 21's vs MAX_BASETYPES …
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