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Rev Chgset Date Author Log Message
(edit) @8748 [8748] 2 days westram - use simpler way to declare attributed static/inline functions
(edit) @8724 [8724] 2 weeks westram * moved leftover functionality from AW_window into AW_selection_list * …
(edit) @8723 [8723] 2 weeks westram * moved functionality from AW_window into AW_selection_list * removed …
(edit) @8719 [8719] 2 weeks westram * added header arb_algo.h (idioms based on <algorithm>) - added …
(edit) @8717 [8717] 2 weeks westram * support for mouse wheel - scrolling (vertical; horizontal with …
(edit) @8715 [8715] 2 weeks westram * mouse button-defs - moved from AWT -> AW (where AW_event is) - …
(edit) @8700 [8700] 3 weeks westram - clear unused error when invalid sort tree specified
(edit) @8589 [8589] 6 weeks westram * macro execution - when a macro terminates (closes DB), it informs …
(edit) @8558 [8558] 7 weeks westram * global define for "no tree selected"
(edit) @8511 [8511] 2 months westram * use GBT_get_species_data instead of inlined code - replaced all …
(edit) @8508 [8508] 2 months westram * NJ-bootstrapping - calculated one tree less than specified (fixed) …
(edit) @8490 [8490] 2 months westram * elim last global from CT_rbtree.cxx - now multiple ConsensusTree …
(edit) @8487 [8487] 2 months westram * reuse MatrixOrder (approx. 10x faster than b4 [8485])
(edit) @8486 [8486] 2 months westram * pull MatrixOrder to caller side * dont try to load tree if no …
(edit) @8485 [8485] 2 months westram * simplified DI_MATRIX::load - create a MatrixOrder object and use it …
(edit) @8482 [8482] 2 months westram * new class ConsensusTree - moved globals from CT_ctree.cxx there …
(edit) @8460 [8460] 3 months westram * added explicit init/cleanup functions for each module in CONSENSUS_TREE …
(edit) @8451 [8451] 3 months westram * added GBT_is_invalid (check tree and return error if invalid) * check …
(edit) @8450 [8450] 3 months westram * moved DI_MATRIX::ROOT into own class DI_GLOBAL_MATRIX - create one …
(edit) @8449 [8449] 3 months westram - added static methods to DI_MATRIX for deleting/replacing ROOT matrix
(edit) @8423 [8423] 3 months westram * use LocallyModify for several flags
(edit) @8393 [8393] 3 months westram - cppchecked (1.53)
(edit) @8360 [8360] 4 months westram * renamed menu separator functions * removed macro AWMIMT
(edit) @8358 [8358] 4 months westram * AWT_reactivate_all_advices - renamed into AW_reactivate_all_advices …
(edit) @8309 [8309] 5 months westram * moved much code into static scope
(edit) @8267 [8267] 6 months westram * removed unused(-but-set) variables/params
(edit) @8249 [8249] 6 months westram * wrap main for untested (but testable) units - still untestable …
(edit) @8246 [8246] 6 months westram * eliminated several main()'s from lib/obj-code - replaced by ARB_main …
(edit) @8217 [8217] 6 months westram - removed dead code
(edit) @8098 [8098] 7 months westram merge from ptpan_back [8023] [8030] [8052] [8058] [8062] * suppress …
(edit) @8036 [8036] 8 months westram merge from dev [7950] [7951] [7952] [7953] [7954] [7955] [7957] * …
(edit) @7931 [7931] 9 months westram merge from dev [7905] [7908] [7927] * added …
(edit) @7918 [7918] 9 months westram * explicit counters for different tree modifications (GroupChanges) * …
(edit) @7917 [7917] 9 months westram * cluster-name suffix now configurable - show example name for …
(edit) @7916 [7916] 9 months westram * removed AWAR_DTREE_REFRESH (-> AWAR_TREE_REFRESH) * DRYed …
(edit) @7913 [7913] 9 months westram * fix cluster naming - 'append to name' * had no effect * …
(edit) @7812 [7812] 10 months westram merge from dev [7751] [7752] * updated many old-style typedefs (typedef …
(edit) @7811 [7811] 10 months westram merge from dev [7748] [7749] [7750] * comments (C->C++ style) * fixed …
(edit) @7803 [7803] 10 months westram merge from dev [7716] [7732] [7733] [7734] [7735] * script to add+remove …
(edit) @7801 [7801] 10 months westram merge from dev [7710] * resolve some nesting in library dependencies …
(edit) @7800 [7800] 10 months westram merge from dev [7687] [7692] [7693] [7694] [7695] [7697] [7706] [7707] …
(edit) @7770 [7770] 10 months westram merge from dev [7679] [7683] [7684] [7685] [7686] * ARBDB -> CORE - …
(edit) @7669 [7669] 11 months westram * merge from dev [7638] [7639] [7646] [7645] [7647] [7648] [7649] [7650] …
(edit) @7661 [7661] 12 months westram * merge from dev [7512] [7520] [7522] [7529] [7530] [7531] [7532] [7535] …
(edit) @7659 [7659] 12 months westram * merge from dev [7494] [7495] [7496] [7497] [7498] [7499] [7500] [7501] …
(edit) @7655 [7655] 12 months westram * merge from dev [7485] [7493] - eliminated AW_font_information (using …
(edit) @7636 [7636] 12 months westram * added basic reference entries handler - goal: perform action on all …
(edit) @7632 [7632] 12 months westram * ARB_DIST - use ints in DI_dmatrix - matrix allows much denser …
(edit) @7631 [7631] 12 months westram - cosmetics
(edit) @7623 [7623] 12 months westram - merge from dev [7450] [7452] [7456] [7457] [7458] [7459] [7460] [7461] …
(edit) @7622 [7622] 12 months westram * merge from dev [7434] [7435] [7436] [7437] [7438] [7439] [7440] [7441] …
(edit) @7335 [7335] 14 months westram * renamed intf (global typename from /usr/include/zconf.h) * fixed …
(edit) @7190 [7190] 15 months westram merges [7164] [7165] [7166] [7167] [7168] [7169] [7170] from refactor * …
(edit) @7186 [7186] 15 months westram merges [7097] [7098] [7100] [7101] [7102] [7103] [7105] from refactor * …
(edit) @7183 [7183] 15 months westram merges [7084] [7086] [7087] [7088] from refactor * added CORE lib - …
(edit) @7111 [7111] 16 months westram * added export as comma-separated-values (NDS export) * renamed enum …
(edit) @7044 [7044] 19 months westram * fixed include wrappers (merges [7006] [7007]) - use gcc-style …
(edit) @7018 [7018] 19 months westram * create a simple index page (to invite google to search all pages) - …
(edit) @7014 [7014] 19 months westram - cluster search no longer crashes when used on protein alignments (no …
(edit) @6913 [6913] 20 months westram * suppress status update by matrix calculation with a flag. Suppress while …
(edit) @6868 [6868] 21 months westram - updated prototypes and dependencies
(edit) @6867 [6867] 21 months westram * ARB GUI (merges [6844] [6845] [6847] [6858] [6861] from refactor) * new …
(edit) @6866 [6866] 21 months westram * compiler-messages (merges [6848] [6849] [6850] [6851] [6853] [6855] …
(edit) @6865 [6865] 21 months westram * loosened dependencies between libraries (merges [6820] [6828] [6830] …
(edit) @6817 [6817] 21 months westram - depends for [6816]
(edit) @6814 [6814] 21 months westram * depends updated for [6812] + [6813]
(edit) @6666 [6666] 2 years westram * AW_root - ctor initializes AWAR subsystem - made more clear that …
(edit) @6659 [6659] 2 years westram * free() - removed unneeded casts of argument - removed unneeded …
(edit) @6656 [6656] 2 years westram - removed unneeded 'struct' keyword - renamed several structs …
(edit) @6607 [6607] 2 years westram - NDS text creation mode changed to enum
(edit) @6568 [6568] 2 years westram - name change
(edit) @6527 [6527] 2 years westram - ignore *.gcda *.gcno
(edit) @6509 [6509] 2 years westram [static checker] * fixed error handling for several functions * use flag …
(edit) @6501 [6501] 2 years westram - redefined ATTRIBUTED() as STATIC_ATTRIBUTED and INLINE_ATTRIBUTED
(edit) @6490 [6490] 2 years westram * moved a few types to arbdb_base.h * only use arbdb_base.h or arbdb.h …
(edit) @6485 [6485] 2 years westram - list of detected clusters can be sorted by different criteria
(edit) @6483 [6483] 2 years westram - trace calculated distances (DEBUG)
(edit) @6482 [6482] 2 years westram - fixed width calculation (signedness?)
(edit) @6481 [6481] 2 years westram * clustersearch - fixed crash on unnamed group in tree (just ignore …
(edit) @6476 [6476] 2 years westram * ColumnStat?-ctor now expects an AWAR containing an alignment (most …
(edit) @6463 [6463] 2 years westram * Changed hash-size passed to GBS_create_hash etc. - pass number of …
(edit) @6448 [6448] 2 years westram - added library dependency declarations
(edit) @6428 [6428] 2 years westram * replaced global (and multiple existing) AD_map_viewer() by callback …
(edit) @6422 [6422] 2 years westram * moved fileselection to libWINDOW (to remove dependency libWINDOW -> …
(edit) @6421 [6421] 2 years westram * (started to) replace adawcbstruct - instead use classes …
(edit) @6410 [6410] 2 years westram * replaced stupid name 'selection_box' with 'fileselection'
(edit) @6409 [6409] 2 years westram * aw_root::open_default no longer uses AWT_announce_db_to_browser * now …
(edit) @6397 [6397] 2 years westram * renamed AWT_csp -> ColumnStat? * renamed many other ColumnStat? related …
(edit) @6395 [6395] 2 years westram * made some tree functions use 'const GBT_TREE*' * GBT_count_nodes -> …
(edit) @6385 [6385] 2 years westram - removed trailing whitespace
(edit) @6383 [6383] 2 years westram - removed void
(edit) @6381 [6381] 2 years westram - fixed includes - added MBI headers - removed unused files
(edit) @6374 [6374] 2 years westram * fixed doxygen-alike comments - either use explicit qt-style triggers …
(edit) @6371 [6371] 2 years westram * more ws fixes
(edit) @6369 [6369] 2 years westram * removed NOOPs
(edit) @6367 [6367] 2 years westram * manual whitespace fix (some broken by script, some already broken b4)
(edit) @6366 [6366] 2 years westram * fixed whitespace (scripted)
(edit) @6364 [6364] 2 years westram - use less useless comments
(edit) @6363 [6363] 2 years westram - unused file
(edit) @6352 [6352] 2 years westram - condensed several comments
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