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Rev Chgset Date Author Log Message
(edit) @6681 [6681] 6 weeks westram * added GB_key_2_existing_quark (like GB_key_2_quark, but returns 0 for …
(edit) @6680 [6680] 6 weeks westram - do not TRACE_ALLOCS until block bug is fixed
(edit) @6679 [6679] 8 weeks westram - When ~/arb_tcp.dat exists it is used by ARB, but editing in ptserver …
(edit) @6678 [6678] 8 weeks westram - param int->bool
(edit) @6677 [6677] 2 months westram - measure time used for tests
(edit) @6676 [6676] 2 months westram - avoid conflicts in directory generation
(edit) @6675 [6675] 3 months westram * AW_awar / widget interaction - replaced AW_INSERT_BUTTON_IN_AWAR_LIST …
(edit) @6674 [6674] 3 months westram * valgrind2grep: - ignore some leaked motif memory (wont fix that (now)) …
(edit) @6673 [6673] 3 months westram * GBS_strstruct - made a class - added unit tests
(edit) @6672 [6672] 3 months westram * again added old hack-around removed in [6654] * enabled TRACE_ALLOCS - …
(edit) @6671 [6671] 3 months westram - AllocLogEntry? uses void*
(edit) @6670 [6670] 3 months westram - allow infinite NTREE clones
(edit) @6669 [6669] 4 months westram - don't warn when reporting probe matches to field 'tmp' twice. append …
(edit) @6668 [6668] 4 months westram * moved match visualization ("GUCACGGCU-=NN=====g=-CAGCAGCCC") from …
(edit) @6667 [6667] 4 months westram * replaced tests in DB-read/write functions by some inlines providing more …
(edit) @6666 [6666] 4 months westram * AW_root - ctor initializes AWAR subsystem - made more clear that …
(edit) @6665 [6665] 4 months westram - added GB_open_DBs() - returns number of open ARB databases
(edit) @6664 [6664] 4 months westram - free remote_hash
(edit) @6663 [6663] 4 months westram * allow GB_close in "no transaction" mode (needed to close properties DB) …
(edit) @6662 [6662] 4 months westram - exclude directory UNIT_TESTER/tests
(edit) @6661 [6661] 4 months westram * gbm_get_mem / gbm_free_mem use void* (like malloc/free)
(edit) @6660 [6660] 4 months westram - more fixes to source-list
(edit) @6659 [6659] 4 months westram * free() - removed unneeded casts of argument - removed unneeded …
(edit) @6658 [6658] 4 months westram - include lib depends to arb_src.tgz
(edit) @6657 [6657] 4 months westram - undo part of [6656]
(edit) @6656 [6656] 4 months westram - removed unneeded 'struct' keyword - renamed several structs …
(edit) @6655 [6655] 4 months westram * struct GBS_strstruct -> GBS_strstruct
(edit) @6654 [6654] 4 months westram * This patch stuffs all memory leaks in ARBDB (as far as covered by …
(edit) @6653 [6653] 4 months westram - skip scoped symbols (xx::yy) - e.g. static variables inside functions
(edit) @6652 [6652] 4 months westram - use smart pointers for several static buffers (freeing more reachable …
(edit) @6651 [6651] 4 months westram - rewrote arb_tcp.dat-handling (fixing memleaks)
(edit) @6650 [6650] 4 months westram - fixed memleak caused by hash-statistics (DEBUG only)
(edit) @6649 [6649] 4 months westram * GB_close crashed for DBs with mapfiles since [6648] - on mapfile-load …
(edit) @6648 [6648] 4 months westram * stuffed all direct memory leaks in GB_open/GB_close - call …
(edit) @6647 [6647] 4 months westram - field conversion errors were reported for wrong species
(edit) @6646 [6646] 4 months westram * DB cache - didn't cache anything since ages (gb_cache_entry.clock was …
(edit) @6645 [6645] 4 months westram - fix error handling
(edit) @6644 [6644] 4 months westram - disabled several debug prints
(edit) @6643 [6643] 4 months westram - compile error
(edit) @6642 [6642] 4 months westram - disabled some DEBUG code
(edit) @6641 [6641] 4 months westram * fast_aligner - fill start of alignBuffer with gaps when aligning …
(edit) @6640 [6640] 4 months westram * removed unused parameters/parameter names * made several functions …
(edit) @6639 [6639] 4 months westram * GB_change_my_security - removed constant result - removed unused …
(edit) @6638 [6638] 4 months westram * replaced more duplicated code
(edit) @6637 [6637] 4 months westram * replaced duplicated code
(edit) @6636 [6636] 4 months westram * replaced defines by enum GBCM_ServerResult - fixed functions
(edit) @6635 [6635] 4 months westram * removed unused parameter names (fixing unused warnings)
(edit) @6634 [6634] 4 months westram * ARBDB memory management - gbm_put_memblk/gbm_get_memblk went static …
(edit) @6633 [6633] 4 months westram - unused warnings (removed parameters/parameternames)
(edit) @6632 [6632] 4 months westram - rename
(edit) @6631 [6631] 4 months westram - automatically name unnamed parameters in xsub-wrappers
(edit) @6630 [6630] 4 months westram - gb_save_mapfile returns GB_ERROR instead of exporting it
(edit) @6629 [6629] 4 months westram * fixed DB-main-index handling - use GB_random() instead of time() to …
(edit) @6628 [6628] 4 months westram - depends + prototypes updated
(edit) @6627 [6627] 4 months westram - quicksave *.a99 was never used
(edit) @6626 [6626] 4 months westram - unit tests for save/load DB
(edit) @6625 [6625] 4 months westram * DBs for unit-testing
(edit) @6624 [6624] 4 months westram * some unit-test assertions for error handling
(edit) @6623 [6623] 4 months westram * was not able to load ASCII-DB, if one string entry starts with '%'
(edit) @6622 [6622] 4 months westram * if DB contained no tree, NDS list view was unscrollable - reason: …
(edit) @6621 [6621] 4 months westram - debug output
(edit) @6620 [6620] 4 months westram - determine hash-size from tree-size (reverts hack [6619])
(edit) @6619 [6619] 4 months westram - fixed useless hash-size-warning (occurs with many zombies)
(edit) @6618 [6618] 4 months westram * If properties were saved with 'Rotate molecule'=true, the meaning of the …
(edit) @6617 [6617] 4 months westram - fix_depends.pl didn't work if $ARBHOME contained '+' or similar
(edit) @6616 [6616] 4 months westram * restored previous version (checkin by mistake)
(edit) @6615 [6615] 4 months westram * when installing SIGPIPE handlers, also accept SIG_IGN as old handler
(edit) @6614 [6614] 4 months westram - swapped argument order of ASSERT_RESULT()
(edit) @6613 [6613] 4 months westram - commented out 'treetool' (no longer provided?)
(edit) @6612 [6612] 4 months westram - added gcc 4.4.3
(edit) @6611 [6611] 4 months westram * IRS tree view - enabled auto-jump (was disabled in IRS) - tried to …
(edit) @6610 [6610] 5 months westram * handle tree-command-modes which are common for list- and tree-views at …
(edit) @6609 [6609] 5 months westram * avoid repeated dynamic casts to AWT_graphic_tree * removed duplicated …
(edit) @6608 [6608] 5 months westram * added GB_followingEntry and GB_following_marked - like GB_nextEntry …
(edit) @6607 [6607] 5 months westram - NDS text creation mode changed to enum
(edit) @6606 [6606] 5 months westram * show brackets with groupname for open groups (dendrogram only)
(edit) @6605 [6605] 5 months westram * added XmGetPixmap? to ignored valgrind-errors
(edit) @6604 [6604] 5 months westram * taxonomy cache - added define for number of chars used as …
(edit) @6603 [6603] 5 months westram * re-import (GDE import, e.g. external aligner, readseq?) - added 'skip …
(edit) @6602 [6602] 5 months westram * re-import after calling external aligner - zero byte was not written …
(edit) @6601 [6601] 5 months westram - major changes since v5
(edit) @6600 [6600] 5 months westram * if re-align failed for ALL species, ARB asked to increase alignment …
(edit) @6599 [6599] 5 months westram - do not export error in GBT_check_arb_file
(edit) @6598 [6598] 5 months westram - create species from consensus failed since [6272]. EDIT4 was always …
(edit) @6597 [6597] 5 months westram - optimize hash used for suppression of repeated errors
(edit) @6596 [6596] 5 months westram - fixed crash during merge
(edit) @6595 [6595] 5 months westram * changed BOOL/TRUE/FALSE into bool/true/false * deleted unused class …
(edit) @6594 [6594] 5 months westram - error handling
(edit) @6593 [6593] 5 months westram - error handling
(edit) @6592 [6592] 5 months westram - error handling / cosmetics
(edit) @6591 [6591] 5 months westram * fixed lazy-sequence-loading for AP_sequence_protein (broken since …
(edit) @6590 [6590] 5 months westram * spelling
(edit) @6588 [6588] 5 months westram * changed default browse-url-command to 'xdg-open' ('open' on DARWIN). …
(edit) @6587 [6587] 5 months westram * species/SAI-references for alignment adaption - added buttons to …
(edit) @6586 [6586] 5 months westram - fixed unit-test broken by [6584] - added additional unit-tests for …
(edit) @6585 [6585] 5 months westram * memleak
(edit) @6584 [6584] 5 months westram * GBT_names_move() wraps around if dest index is out of bounds * …
(edit) @6583 [6583] 5 months westram * moved some local prototypes to headers * rename - check_status -> …
(edit) @6582 [6582] 5 months westram * moved AW_selection_list methods to AW_select.cxx * renamed - …
(edit) @6581 [6581] 5 months westram * added AW_window/init_selection_list_from_array() * …
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