Ticket #781: rna.fasta

File rna.fasta, 6.8 KB (added by westram, 6 years ago)
Line 
1>MetMazeiMetMazei        1475 bp          rna
2.......... .......... .....AUUCU GGUUGAUCCU GCCAGAGGUU
3ACUGCUAUCG GUGUUCGCCU AAGCCAUGCG AGUCAUAUGU A-GCAA--UA
4CAUGGCGUAC UGCUCAGUAA CACGUGGAUA ACCUGCCCUU GGGACCGGCA
5UAACCCCGGG AAACUGGGGA UAAUUCCGGA UAACGCAUAU UUGCUGGAAU
6GCUUUAUGCG UCAAAAGGAU UCGUCUGCCC AAGGAUGGGU CUGCGGCCUA
7UCAGGUAGUA GUGGGUGUAA UGUACCUACU AGCCAGCGAC GGGUACGGGU
8UGUGAGAGCA AGAGCCCGGA GAUGGAUUCU GAGACAUGAA UCCAGGCCCU
9ACGGGGCGCA GCAGGCGCGA AAACUUUACA AUGCGGGAAA CCGUGAUAAG
10GGGACACCGA GUGCCA-GCA UCAU-AUGCU GGCUGUCCGG AUGUGUAAAA
11UACAUCCGUU AGCAAGGGCC GGGCAAGACC GGUGCCAGCC GCCGCGGUAA
12CACCGGCGGC CCGAGUGGUG AUCGUGAUUA UUGGGUCUAA AGGGUCCGUA
13GCCGGUUUGG UCAGUCCUCC GGGAAAUCUG AUAGCUCAAC UAUUAGGCUU
14UCGGGGGAUA CUGCCAGACU UGGAACCGGG AGAGGUAAGA GGUACUACAG
15GGGUAGGAGU GAAAUCUUGU AAUCCCUGUG GGACCACCUG UGGCGAAGGC
16GUCUUACCAG AACGGGUUCG ACGGUGAGGG ACGAAAGCUG GGGGCACGAA
17CCGGAUUAGA UACCCGGGUA GUCCCAGCCG UAAACGAUGC UCGCUAGGUG
18UCAGGCAUGG CGCGACCGUG UCUGGUGCCG CAGGGAAGCC GUGAAGCGAG
19CCACCUGGGA AGUACGGCCG CAAGGCUGAA ACUUAAAGGA AUUGGCGGGG
20GAGCACAACA ACGGGUGGAG CCUGCGGUUU AAUUGGACUC AACGCCGGAC
21AACUCACCGG GGGCGACAGC AAUAUGUAGG CCAAGCUGAA GACUUUGCCU
22-GAAUCGCUG AGAGGAGGUG CAUGGCCGUC GCCAGUUCGU ACUGUGAAGC
23AUCCUGUUAA GUCAGGCAAC GAGCGAGACC CGUGCCCACU GUUACCAGCA
24UGUCCUCCGG GACGAUGGGU ACUCUGUGGG GACCGCCGAU GUUAAAUCGG
25AGGAAGGUGC GGGCCUCGGU AGGUCAGUAU GCCCCGAAUC UCCCGGGCUA
26CACGCGGGCU ACAAUGGAUG GGACAAUGGG UCCCUCCCCU GAAAAGGGCU
27GGUAAUCUCA CAAACCCAUU CGUAGUUCGG AUCGAGGGCU GUAACUCGCC
28CUCGUGAAGC UGGAAUCCGU AGUAAUCGCG UUUCAA-UAU AGCGCGGUGA
29AUACGUCCCU GCUCCUUGCA CACACCGCCC GUCAAACCAC CCGAGUGAGG
30UAUGGGUGAG GGCACGGACU UC-GUGCCGU GUUCGAACCU GUGCUUUGCA
31AGGGUGGUUA AGUCGUAACA AGGUAGCCGU AGGGGAAUCU GCGGCUGGAU
32CACCUCCU.. .......... .......... ..
33>MhcBurtoMhcBurto        1476 bp          rna
34.......... .......... .....AUCCY GKUUGAUCCY GSCAGAGGUU
35ACUGCUAUCG GUGUUCGACU AAGCCAUGCG AGUCAUAUGU UCUUCGUGAA
36CAUGGCGGAC UGCUCAGUAA CACGUGGAUA ACCUGCCCUU AGGUUUGGCA
37UAACUCCGGG AAACUGGAGA UAAUUCCGAA UAGGUCAAAU AUGCUGGAAU
38GCUUUUUGAU CAAAA-GACU UCGGUUGCCU AAGGAUGGAU CUGCGGUCUA
39UCAGGUUGUA GUGGGUGUAA CGUACCUACU AGCCUACGAC GGAUAUGGGU
40UGUGAGAGCA AGAGCCCAGA GAUGGAUUCU GAGACAUGAA UCCAGGCCCU
41ACGGGGCGCA GCAGGCGCGA AAUCUUUACA AUGCGGGAAA CCGCGAUAAG
42GGGACACCGA GUGCCAAGCA U-UU-AUGUU GGCUGUCCAC AUGUGUAAAC
43GGCAUGUGUU AGCAAGGGCC GGGCAAGACC GGUGCCAGCC GCCGCGGUAA
44CACCGGCGGC CCGAGUGGUA AUCACUUUUA UUGGGUCUAA AGGGUCCGUA
45GCCGGUUUGA UCAGUUCUUC GGGAAAUCUG ACAGCUCAAC UGUUAGGCUU
46CCGGGGAAUA CUGUCAGACU UGGGACCGGG AGAGGUAAGA GGUACUACAG
47GGGUAGGAGU GAAAUCUUGU AAUCCCUGUG GGACCACCAG UGGCGAAGGC
48GUCUUACCAG AACGGGUCCG ACGGUGAGGG ACGAAAGCUG GGGGCACGAA
49CCGGAUUAGA UACCCGGGUA GUCCCAGCCG UAAACGAUGU UCGCUAGGUG
50UCAGGGGCGG UGCGACCGCU UCUGGUGCCG UAGGGAAGCC GUGAAGCGAA
51CCACCUGGGA AGUACGGCCG CAAGGCUGAA ACUUAAAGGA AUUGGCGGGG
52GAGCACUACA ACGGGUGGAG CCUGCGGUUU AAUUGGACUC AACGCCGGAA
53AACUCACCGG GGGCGACAGC AAAAUGUAGG UCAAGCUAAA GACUUUACCU
54-GAAUCGCUG AGAGGAGGUG CAUGGCCGUC GUCAGUUCGU ACUGUGAAGC
55AUCCUGUUAA GUCAGGCAAC GAGCGAGACC CGUGCCCACU GUUGCCAGCA
56UGUCCUUCGG GAUGAUGGGU ACUCUGUGGG GACCGCUGGU GCUAAACCAG
57AGGAAGGUGC GGGCUACGGU AGGUCAGUAU GCCCCGAAUC UCCCGGGCUA
58CACGCGGGCU ACAAUGGUUG GGACAAUGGG UUCCUACACC GAAAGGUGAU
59GGCAAUCUCC UAAACCCAAC CGUAGUUCGA AUUGAGGACU GUAACUCGUC
60CUCAUGAAGC UGGAAUCCGU AGUAAUCGCG UUUCAAC-AU AGCGCGGUGA
61AUACGUCCCU GCUCCUUGCA CACACCGCCC GUCAAACCAC CCGAGUGAGG
62UAUGGGUGAG GGCACGGACU UA-GUGCCGU GUUCGAACCU AAAUUUCGCA
63AGGGGGGUUA AGUCGUAACA AGGUAGCCGU AGGGGAAUCU GCGGCUGGAU
64CACCUCC... .......... .......... ..
65>Mhs-Soehn-Soehn        1520 bp          rna
66GGAAUUAACA AAAACUUCCU AGAGAAUUCU GGUUGAUCCU GCCAGAGGUU
67ACUGCUAUCG AGGUUCGACU AAGCCAUGCG AGUCGAAUGU A-GCAA--UA
68CAUGGCGAAC UGCUCAGUAA CACGUGGACA ACCUGCCCUU AGGUUGGGUA
69UAAACCCGGG AAACUGGGUA UAAUACCCGA UAGGUCUCGA UUGCUGGAAU
70GCAUCGAGAU UUAAA-GC-U CCG-GCGCCU AAGGAUGGGU CUGCGGCCUA
71UCAGGUAGUA GUGGGUGUAG CGUACCUACU AGCCUACGAC GGGUACGGGU
72UGUGAGAGCA AGAGCCCGGA GAUGGAUUCU GAGACACGAA UCCAGGCCCU
73ACGGGGUGCA GCAGGCGCGA AAACUUUACA AUGCUGGCAA CAGCGAUAAG
74GGAACCUCGA GUGCCA-GGU UACA-AAUCU GGCUGUCGAG AUGCCUAAAA
75AGCAUUUCAU AGCAAGGGCC GGGCAAGACC GGUGCCAGCC GCCGCGGUAA
76CACCGGCGGC UCGAGUGGUA ACCGUUAUUA UUGGGUCUAA AGGGUCUGUA
77GCCGGCCGGA UAAGUCUCUU GAGAAAUCUG GCAGCUUAAC UGUCAGGCUU
78UCAGGAGAUA CUGUCUGGCU CGAGGCCGGG AGAGGUGAGA GGUACUUCAG
79GGGUAGGGGU GAAAUCUUGU AAUCCUUGAA GGACCACCAG UGGCGAAGGC
80GUCUCACCAG AACGGACCUG ACGGCAAGGG ACGAAAGCUA GGGGCACGAA
81CCGGAUUAGA UACCCGGGUA GUCCUAGCCG UAAACGAUAC UCGCUAGGUG
82UCGGCCACGG UGCGACCGUU GUCGGUGCCG UAGGGAAGCC GUGAAGCGAG
83CCACCUGGGA AGUACGGCCG CAAGGCUGAA ACUUAAAGGA AUUGGCGGGG
84GAGCACCACA ACGGGUGGAG CUUGCGGUUU AAUUGGAUUC AACGCCGGAA
85AUCUUACCGG GACCGACAGC AAUAUGAAGG CCAGGCUGAA GACUUUGCC-
86GGAUUAGCUG AGAGGUGGUG CAUGGCCGUC GUCAGUUCGU ACUGUGAAGC
87AUCCUGUUAA GUCAGGCAAC GAGCGAGACC CACGCCCACA GUUGCCAGCG
88UACUCUCUGG AGUGACGGGU ACACUGUGGG GACCGCCGCU GCUAAAGCGG
89AGGAAGGAAU GGGCAACGGU AGGUCAGUAU GCCCCGAAUA UCCCGGGCUA
90CACGCGAGCU ACAAUGGUUG GUACAAUGGG UAUCUACCCC GAAAGGGGAC
91GGGAAUCUCC UAAAACCAAU CUUAGUUCGG AUUGAGGGCU GCAACUCGCC
92CUCAUGAAGC UGGAAUCCGU AGUAAUCGCG UUUCAAC-AG AACGCGGUGA
93AUACGUCCCU GCUCCUUGCA CACACCGCCC GUCAAACCAC CCGAGUAGGG
94UCUGAAUGAG AGCGCUUU-C UUU-GGAGGC GUUCGAAUUU GGGCUUUGCA
95AGGGGGGUUA AGUCGUAACA AGGUAGCCGU AGGGGAAUCU GCGGCUGGAU
96CACCUCCUAA CGUUACGAGC AUGCAAAACA GC
97>MhrHunga        1466 bp          rna
98.......... .......... .....AUUCU GNUUGAUCCU GCCAGAGGCC
99ACUGCUAUCG GGGUUUGACU AAGCCAUGCG AGUCGAGAGG .UGCAA-GAC
100CUCGGCGUAC UGCUCAGUAA CACGUGGACA AUCUGCCCUG AAGAGGAGGA
101UAAUCCCGGG AAACUGGGGG UAAUACUCCA UAGUUCGUGC UGACUGGAAU
102GUUAUGCGAA CGAAA-GA-U CCG-UCGCUU CAGGAUGAGU CUGCGGCCGA
103UUAGGUAGUU GUUGGGGUAA CGGCCCAACA AGCCUGUCAU CGGUACGGGU
104UGUGGGAGCA AGAGCCCGGA GAUGGAUUCU GAGACACGAA UCCAGGCCCU
105ACGGGGCGCA GCAGGCGCGA AAACUUUACC AUGCGGGCAA CCGUGAUAAG
106GAAACCCCGA GUGCCA-GC- -ACAG--GCU GGCUGUCCAC CAGUGUAAAU
107AACUGGUGA- AGAAAGGGCC GGGCAAGACC GGUGCCAGCC GCCGCGGUAA
108UACCGGCGGC UCGAGUGGUG GCCGCUAUUA CUGGGCUUAA AGGGUCCGUA
109GCUGGAUAUA CAAGUCCCUU GAGAAAUCCG CCGGCUUAAC CGGUGGGCGU
110UCAGGGGAAA CUGUAUUUCU AGGGACCGGG AGAGGUGAGA GGUACUGCCG
111GGGUAGGAGU GAAAUCCUGU AAUCCCGGUG GGACCACCUA UGGCGAAGGC
112AUCUCACCAG AACGGGUCCG ACAGUGAGGG ACGAAAGCUG GGGGAGCAAA
113CCGGAUUAGA UACCCGGGUA GUCCCAGCUG UAAACGAUGC GCGUUAGGUG
114UGUCAGUGAC CACGUGUCAC UGAGGUGCCG AAGGGAAACC GUGAAACGCG
115CCGCCUGGGG AGUACGGUCG CAAGGCUGAA ACUUAAAGGA AUUGGCGGGG
116GAGCACCACA ACGGGUGGAG CCUGCGGUUU AAUCGGACUC AACGCCGGAA
117AUCUCACCGG AUAAGACAGC UGAAUGAUAG UCGGGAUGAA GACUCUACUU
118-GACUAGCUG AGAGGAGGUG CAUGGCCGUC GUCAGUUCGU ACUGUGAAGC
119AUCCUGUUUA GUCAGGCAAC GAGCGAGACC CACGCGAGCA GUUGCCAGCU
120UGACCUUCGG GUUGAUGGGG ACACUGCUCG GACCGCCUCU GCUAAAGGGG
121AGGAAGGAAU GGGCAACGGU AGGUCAGCAU GCCCCGAAUU AUCCGGGCUA
122CACGCGGGCU ACAAUGGACA GGACAAUGGG UUUCGACACC GAGAGGUGAG
123GAUAAUCUCC UAAACCUGUC CGAAGUUCGG AUUGCGGGUU GUAACUCACC
124CGCAUGAAGC UGGAAUCCGU AGUAAUCGCG UUUCAAC-AU AGCGCGGUGA
125AUAUGUCCCU GCUCCUUGCA CACACCGCCC GUCAAACCAC CCGAGUGAGG
126UCUUGAUGAG GAUGUAUC-A UU--G-AUAU GUUCGAAUCU GGGUUUUGCA
127AGGGGGGUUA AGUCGUAACA AGGUAGCCGU AGGGGAAUCU GCGGCUGGAU
128CACCUCCU.. .......... .......... ..