| #32 |
Sequences with protection level >0 can be deleted in Search and Query
|
new
|
westram
|
defect
|
major
|
ARB_NTREE
|
| #39 |
Generating new name when importing sequences - additional fields ignored?
|
new
|
devel
|
defect
|
major
|
ARB_NAME_SERVER
|
| #59 |
crash when merging DBs with concatenated alignments
|
new
|
devel
|
defect
|
major
|
ARB_NTREE
|
| #65 |
tree compare
|
new
|
devel
|
enhancement
|
major
|
ARB_NTREE
|
| #86 |
undo after "destroy group" does not recover the group name; ARB crashes after a subsequent try to rename the group
|
new
|
devel
|
defect
|
major
|
Library (DB)
|
| #100 |
Sec_Edit shows no structure when alignment was expanded
|
new
|
westram
|
defect
|
major
|
ARB_SECEDIT
|
| #119 |
Sort query results by distance
|
new
|
devel
|
enhancement
|
major
|
ARB_NTREE
|
| #143 |
Database versioning
|
new
|
devel
|
enhancement
|
major
|
ARB_NTREE
|
| #159 |
Sec edit crashes when saving secondary structure
|
new
|
westram
|
defect
|
major
|
ARB_SECEDIT
|
| #162 |
ARB crashes when transferring species or SAIs if the amount of alignemnt position is extended
|
new
|
devel
|
defect
|
major
|
!NoIdea
|
| #164 |
No connection to name server possible if this has been started by someone else
|
new
|
devel
|
enhancement
|
major
|
ARB_NAME_SERVER
|
| #169 |
Feature Request: More Information in Message Boxes when problems with conflicting field types pop up
|
new
|
devel
|
enhancement
|
major
|
!NoIdea
|
| #180 |
ARB NeighbourJoining, Sequence Compression Option is missing
|
new
|
devel
|
enhancement
|
major
|
ARB_DIST
|
| #182 |
ARB Neighbour Joining, remove reduction of input sequences when bootstrapping
|
new
|
devel
|
enhancement
|
major
|
ARB_DIST
|
| #184 |
RAxML, Filter settings in tree output message missing
|
new
|
devel
|
defect
|
major
|
External_tools
|
| #186 |
Mess with Protection levels
|
new
|
westram
|
defect
|
major
|
global
|
| #192 |
Nameserver not multiuser-capable
|
new
|
devel
|
defect
|
major
|
ARB_NAME_SERVER
|
| #195 |
Remove stop-codon option does not work
|
new
|
devel
|
defect
|
major
|
External_tools
|
| #207 |
bootstrap transfer
|
new
|
devel
|
enhancement
|
major
|
ARB_NTREE
|
| #209 |
optionally skip numbers from xfig tree-export
|
assigned
|
westram
|
defect
|
major
|
Library (GUI)
|
| #215 |
Treatment of temporary files when running external programs in ARB
|
new
|
devel
|
defect
|
major
|
!NoIdea
|
| #216 |
NDS Configurations can not be deleted
|
new
|
devel
|
defect
|
major
|
!NoIdea
|
| #217 |
Fix error handling in ARB
|
assigned
|
westram
|
task
|
major
|
global
|
| #220 |
Name Server stalles when renaming large amounts of tag sequences
|
new
|
devel
|
defect
|
major
|
ARB_NAME_SERVER
|
| #227 |
AISC cant handle strings longer than 1024
|
new
|
devel
|
task
|
major
|
Library (other)
|
| #231 |
RaxMl tree filter settings are not displayed
|
new
|
devel
|
defect
|
major
|
!NoIdea
|
| #232 |
Non-existing socket connection lets arb programs crash
|
new
|
devel
|
defect
|
major
|
ARB_NTREE
|
| #233 |
"Global optimization of marked visible nodes" in ARB Parsimony crashes with "stack overflowwhen running on tree_SSURef_1200_slv_102.
|
new
|
devel
|
defect
|
major
|
ARB_PARSIMONY
|
| #235 |
replace Motif
|
new
|
devel
|
task
|
major
|
Library (GUI)
|
| #1 |
Sequence refresh problem in ARB_EDIT4
|
new
|
devel
|
defect
|
normal
|
ARB_EDIT4
|
| #12 |
PT server admin
|
new
|
westram
|
defect
|
normal
|
!NoIdea
|
| #18 |
New alignment type for custom sequence-data (non RNA-DNA-AA)
|
new
|
westram
|
enhancement
|
normal
|
!NoIdea
|
| #26 |
Multiple renames produce zombies
|
new
|
westram
|
defect
|
normal
|
!NoIdea
|
| #29 |
probe match/design parameters
|
new
|
devel
|
defect
|
normal
|
ARB_PT_SERVER
|
| #43 |
Deleting columns causes extra calculation. Why?
|
new
|
westram
|
defect
|
normal
|
ARB_NTREE
|
| #52 |
Open species information from within Editor
|
new
|
devel
|
enhancement
|
normal
|
ARB_EDIT4
|
| #53 |
Save configuration
|
new
|
devel
|
defect
|
normal
|
ARB_EDIT4
|
| #56 |
Layout changes
|
new
|
westram
|
task
|
normal
|
!NoIdea
|
| #61 |
Concatenated alignments
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #63 |
Macro recording/playback for clients
|
new
|
devel
|
enhancement
|
normal
|
!NoIdea
|
| #64 |
New circular tree view
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #68 |
Missing drag line when moving group info
|
new
|
westram
|
defect
|
normal
|
ARB_NTREE
|
| #70 |
Fast Aligner message window
|
new
|
devel
|
enhancement
|
normal
|
ARB_EDIT4
|
| #73 |
Fit on X pages is strange
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #74 |
Remove menu poit Tools -> Network
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #76 |
Old Aligner dos not work
|
new
|
devel
|
defect
|
normal
|
ARB_EDIT4
|
| #82 |
Debug Meldungen in Sec Edit abschalten
|
new
|
devel
|
defect
|
normal
|
ARB_EDIT4
|
| #83 |
Add information who add created/updated the PT-server
|
new
|
devel
|
enhancement
|
normal
|
ARB_PT_SERVER
|
| #95 |
Alignment not working
|
new
|
devel
|
defect
|
normal
|
ARB_EDIT4
|
| #97 |
Ctrl-cursor positions false
|
new
|
devel
|
defect
|
normal
|
ARB_EDIT4
|
| #109 |
Crashes sometimes when selecting with right mouse
|
new
|
devel
|
defect
|
normal
|
ARB_EDIT4
|
| #111 |
Jump button bugs
|
assigned
|
westram
|
defect
|
normal
|
ARB_NTREE
|
| #118 |
Number of species in group optional
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #120 |
Treenames used as keys
|
new
|
devel
|
enhancement
|
normal
|
Library (other)
|
| #122 |
User masks crash
|
new
|
devel
|
defect
|
normal
|
ARB_NTREE
|
| #126 |
add faster checksum algorithm
|
new
|
westram
|
enhancement
|
normal
|
!NoIdea
|
| #127 |
Make discarding of sequences when running ARB Neighbour joining with Bootstraps optional
|
new
|
devel
|
enhancement
|
normal
|
!NoIdea
|
| #128 |
Add PhyML bootstrap option to the ARB menu
|
new
|
devel
|
enhancement
|
normal
|
External_tools
|
| #130 |
Add possibily to display tree horizontally flipped
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #132 |
[amd64] "(GB_INT) -1" shows up as "4294967295" (2^32-1)
|
new
|
westram
|
task
|
normal
|
Library (DB)
|
| #137 |
Feature Request - Link Editor with Sepcies information information
|
new
|
devel
|
enhancement
|
normal
|
ARB_EDIT4
|
| #144 |
Treeing for protein partial sequence
|
new
|
devel
|
defect
|
normal
|
!NoIdea
|
| #145 |
bug when realign nucleic acid according to aligned protein
|
new
|
devel
|
defect
|
normal
|
!NoIdea
|
| #155 |
Sorting trees or folders for trees
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #158 |
Missing information about filter used when building trees with RAXML
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #165 |
Crashes/assertions when having alignments without related entries
|
new
|
devel
|
defect
|
normal
|
Library (DB)
|
| #170 |
Feature request: Missing compression button in ARB Neighbour Joining
|
new
|
devel
|
enhancement
|
normal
|
ARB_DIST
|
| #173 |
field conversion in merge tool
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #175 |
ARB_EDIT4 block selection/deselection
|
new
|
devel
|
enhancement
|
normal
|
ARB_EDIT4
|
| #181 |
ARB Neighbour Joining, strange progress window when using bootstrap
|
new
|
devel
|
defect
|
normal
|
ARB_DIST
|
| #188 |
remove hardcoded limit in ACI
|
new
|
devel
|
defect
|
normal
|
!NoIdea
|
| #191 |
Some files in genbank format introduce multiple entries in DB field "nuc_nr" when imported with filter "genbank_silva.ift"
|
new
|
devel
|
defect
|
normal
|
ARB_NTREE (import)
|
| #194 |
Import from ARB-database
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #203 |
Sorting of numerical values does not work correctly
|
new
|
devel
|
defect
|
normal
|
ARB_NTREE
|
| #204 |
Load probe list
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #205 |
enhance multiprobing interface
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE
|
| #206 |
multi selection boxes
|
assigned
|
westram
|
enhancement
|
normal
|
Library (GUI)
|
| #208 |
Filter RAxML output
|
new
|
devel
|
defect
|
normal
|
External_tools
|
| #210 |
auto-sense submenus
|
new
|
devel
|
enhancement
|
normal
|
Library (GUI)
|
| #212 |
Feature request: Search next relatives of Listed Species
|
new
|
devel
|
enhancement
|
normal
|
!NoIdea
|
| #213 |
generalize ACI to work with groups
|
new
|
devel
|
enhancement
|
normal
|
Library (DB)
|
| #218 |
editor crashes when moving cursor inside detailed column statistic
|
new
|
devel
|
defect
|
normal
|
ARB_EDIT4
|
| #219 |
remove detailed column statistic
|
new
|
devel
|
defect
|
normal
|
ARB_EDIT4
|
| #221 |
delete species displayed in input mask
|
new
|
devel
|
defect
|
normal
|
ARB_NTREE
|
| #224 |
line 143 cannot execute binary file
|
new
|
devel
|
defect
|
normal
|
ARB_NTREE
|
| #225 |
error: can't allocate region
|
new
|
devel
|
defect
|
normal
|
ARB_PARSIMONY
|
| #226 |
per user import/export filters
|
new
|
devel
|
enhancement
|
normal
|
ARB_NTREE (import)
|
| #228 |
partial fast alignment vs "partial relatives"
|
assigned
|
westram
|
enhancement
|
normal
|
ARB_EDIT4
|
| #229 |
sequence import number not reset
|
new
|
devel
|
defect
|
normal
|
ARB_NTREE (import)
|
| #230 |
"user comment" contains random data for newly created alignment
|
new
|
devel
|
defect
|
normal
|
ARB_NTREE
|
| #236 |
Add GDE menus for more popular alignment/tree reconstruction tools
|
new
|
devel
|
enhancement
|
normal
|
!NoIdea
|
| #238 |
version information in libARBDB
|
new
|
devel
|
enhancement
|
normal
|
Libraries (several)
|
| #239 |
Pt server can not be built
|
new
|
devel
|
defect
|
normal
|
ARB_PT_SERVER
|
| #240 |
redesign query and dbScanner
|
assigned
|
westram
|
enhancement
|
normal
|
Libraries (several)
|
| #242 |
Verify that FFINDER is not affected by MAX_HITS issue
|
new
|
epruesse
|
task
|
normal
|
ARB_PT_SERVER
|
| #243 |
Dynamically adjust MATCH_MAX_HITS default
|
new
|
devel
|
task
|
normal
|
ARB_PT_SERVER
|
| #244 |
allow external users to create tickets?
|
new
|
devel
|
enhancement
|
normal
|
!NoIdea
|
| #245 |
ARB Genbank export for nucleotides
|
new
|
devel
|
defect
|
normal
|
!NoIdea
|
| #248 |
RESERVED keyword in arb_tcp_org.dat
|
new
|
devel
|
task
|
normal
|
!NoIdea
|
| #250 |
import/export for secondary structures
|
new
|
devel
|
task
|
normal
|
ARB_NTREE
|