| #804 |
replace using regular expressions refuses to replace "nothing"
|
new
|
devel
|
defect
|
critical
|
|
| #812 |
synchronizing IDs may ressurrect zombies in trees
|
assigned
|
westram
|
defect
|
critical
|
|
| #850 |
merge tool sometimes does not merge sequence data
|
new
|
devel
|
defect
|
critical
|
|
| #32 |
Sequences with protection level >0 can be deleted in Search and Query
|
new
|
westram
|
defect
|
major
|
|
| #39 |
Generating new name when importing sequences - additional fields ignored?
|
new
|
devel
|
defect
|
major
|
|
| #59 |
crash when merging DBs with concatenated alignments
|
new
|
devel
|
defect
|
major
|
|
| #86 |
undo after "destroy group" does not recover the group name; ARB crashes after a subsequent try to rename the group
|
new
|
devel
|
defect
|
major
|
|
| #100 |
Sec_Edit shows no structure when alignment was expanded
|
new
|
westram
|
defect
|
major
|
|
| #130 |
Add possibily to display tree horizontally flipped
|
new
|
devel
|
enhancement
|
major
|
wishlist
|
| #143 |
Database versioning
|
new
|
devel
|
enhancement
|
major
|
|
| #159 |
Sec edit crashes when saving secondary structure
|
new
|
westram
|
defect
|
major
|
|
| #162 |
ARB crashes when transferring species or SAIs if the amount of alignemnt position is extended
|
new
|
devel
|
defect
|
major
|
|
| #164 |
No connection to name server possible if this has been started by someone else
|
new
|
devel
|
enhancement
|
major
|
|
| #169 |
Feature Request: More Information in Message Boxes when problems with conflicting field types pop up
|
new
|
devel
|
enhancement
|
major
|
|
| #186 |
Mess with Protection levels
|
new
|
westram
|
defect
|
major
|
|
| #192 |
Nameserver not multiuser-capable
|
new
|
devel
|
defect
|
major
|
|
| #217 |
Fix error handling in ARB
|
new
|
devel
|
task
|
major
|
|
| #227 |
AISC cant handle strings longer than 1024
|
new
|
devel
|
task
|
major
|
|
| #235 |
replace Motif
|
assigned
|
epruesse
|
task
|
major
|
|
| #253 |
inconsistent distance matrix export formats in ARB
|
new
|
devel
|
enhancement
|
major
|
arb7.x
|
| #258 |
Rewrite CSV import
|
new
|
devel
|
enhancement
|
major
|
wishlist
|
| #322 |
undefined pt server breaks assert (crash in DEBUG)
|
new
|
devel
|
defect
|
major
|
|
| #352 |
Editing alignments extremely slow with large DB/tree
|
new
|
devel
|
enhancement
|
major
|
|
| #412 |
Increase EDIT4 sequence search mismatch limit
|
new
|
devel
|
defect
|
major
|
arb7.x
|
| #414 |
Editor crash on right click into sequence area
|
new
|
devel
|
defect
|
major
|
|
| #444 |
Topology comparison via tree display
|
assigned
|
westram
|
umbrella
|
major
|
wishlist
|
| #451 |
'Move groups..' changes root
|
new
|
devel
|
defect
|
major
|
wishlist
|
| #452 |
'remove species from tree' is broken
|
new
|
devel
|
defect
|
major
|
|
| #480 |
undo "delete tree" crashes arb
|
new
|
devel
|
defect
|
major
|
|
| #512 |
Optimize 'Move groups' for speed
|
new
|
devel
|
optimization
|
major
|
wishlist
|
| #554 |
provoking ARB fatal error does not cause termination
|
new
|
devel
|
defect
|
major
|
arb7.x
|
| #566 |
Add mark scripts via GDE
|
assigned
|
westram
|
enhancement
|
major
|
arb7.x
|
| #585 |
optimize database sequence compression
|
new
|
devel
|
optimization
|
major
|
|
| #601 |
Adding Short Sequences to SILVA_NR_119 does not have reliable placement in tree
|
assigned
|
westram
|
misbehavior
|
major
|
|
| #621 |
arb_export_rates crashes
|
new
|
devel
|
defect
|
major
|
arb7.x
|
| #622 |
raxml 'rapid bootstrap analysis' does not import bootstrap values
|
new
|
devel
|
defect
|
major
|
arb7.x
|
| #664 |
Problem DIsplay RNA3d
|
new
|
devel
|
defect
|
major
|
|
| #675 |
message are not processed in reasonable time
|
new
|
devel
|
defect
|
major
|
arb7.x
|
| #706 |
Condensed tree view
|
new
|
devel
|
enhancement
|
major
|
wishlist
|
| #722 |
merge tool: shall warn about mismatch in alignment length
|
assigned
|
westram
|
misbehavior
|
major
|
|
| #734 |
add high level function to update (new) tree from existing tree
|
new
|
devel
|
enhancement
|
major
|
wishlist
|
| #737 |
some unittest macros behave wrong (double eval fix)
|
new
|
westram
|
defect
|
major
|
|
| #745 |
optionally word-wrap group names in tree display
|
new
|
|
enhancement
|
major
|
|
| #748 |
jump to species broken in IRS tree (again)
|
new
|
|
defect
|
major
|
|
| #749 |
species field 'group_name' breaks group/species identification
|
new
|
|
defect
|
major
|
|
| #755 |
probe match shall support more types of "weak matches"
|
new
|
devel
|
enhancement
|
major
|
wishlist
|
| #763 |
ACI-, SRT- and REG-expressions shall get precompiled
|
assigned
|
westram
|
optimization
|
major
|
|
| #767 |
tree importer fails to handle numeric group-names
|
new
|
devel
|
defect
|
major
|
|
| #774 |
allow custom node-IDs during tree-import
|
_started
|
westram
|
enhancement
|
major
|
wishlist
|
| #776 |
arb crashes after import of (specific) trees
|
new
|
devel
|
defect
|
major
|
|
| #785 |
Tree modifications have uncontrolled impact on groups
|
assigned
|
westram
|
defect
|
major
|
|
| #786 |
synchronizing IDs fails after importing the attached file
|
assigned
|
westram
|
defect
|
major
|
|
| #787 |
tree export/import cannot handle node-comment which are no bootstraps
|
new
|
devel
|
defect
|
major
|
|
| #792 |
Move "marked groups only" selects wrong groups
|
new
|
devel
|
defect
|
major
|
|
| #795 |
secedit crashes on startup (OSX only)
|
new
|
devel
|
defect
|
major
|
|
| #809 |
drop support for 32-bit-version
|
new
|
devel
|
optimization
|
major
|
|
| #816 |
cleanup preinstalled import/export filters
|
new
|
devel
|
task
|
major
|
|
| #817 |
add memory buttons to search & query
|
new
|
devel
|
enhancement
|
major
|
|
| #821 |
embed clustal omega
|
new
|
devel
|
task
|
major
|
wishlist
|
| #822 |
arb_launcher fails to terminate w/o error state
|
new
|
devel
|
issue
|
major
|
|
| #832 |
emphasize group name conventions
|
_started
|
westram
|
task
|
major
|
|
| #844 |
ARB freezes upon using keyboard
|
accepted
|
westram
|
defect
|
major
|
|
| #845 |
newick tree exporter shall allow to export 100% bootstraps
|
_started
|
westram
|
misbehavior
|
major
|
|
| #857 |
Rejection of numeric groupnames aborts probably expensive calculations
|
accepted
|
westram
|
defect
|
major
|
|
| #867 |
quitting arb via macro causes problems
|
reopened
|
westram
|
defect
|
major
|
|
| #868 |
allow to mark species using stored selection in merge tool
|
_started
|
westram
|
enhancement
|
major
|
|
| #12 |
PT server admin
|
new
|
westram
|
defect
|
normal
|
|
| #29 |
probe match/design parameters
|
new
|
devel
|
defect
|
normal
|
|
| #43 |
Deleting columns causes extra calculation. Why?
|
new
|
westram
|
defect
|
normal
|
|
| #56 |
Layout changes
|
new
|
westram
|
task
|
normal
|
|
| #61 |
Concatenated alignments
|
new
|
devel
|
enhancement
|
normal
|
|
| #74 |
Remove menu poit Tools -> Network
|
new
|
devel
|
enhancement
|
normal
|
|
| #83 |
Add information who add created/updated the PT-server
|
new
|
devel
|
enhancement
|
normal
|
arb7.x
|
| #97 |
Ctrl-cursor positions false
|
new
|
devel
|
defect
|
normal
|
|
| #109 |
Crashes sometimes when selecting with right mouse
|
new
|
devel
|
defect
|
normal
|
|
| #113 |
Allow to rename DB field
|
new
|
devel
|
enhancement
|
normal
|
arb7.x
|
| #120 |
Treenames used as keys
|
new
|
devel
|
enhancement
|
normal
|
|
| #126 |
add faster checksum algorithm
|
new
|
devel
|
enhancement
|
normal
|
|
| #128 |
Add PhyML bootstrap option to the ARB menu
|
new
|
devel
|
enhancement
|
normal
|
|
| #170 |
Feature request: Missing compression button in ARB Neighbour Joining
|
new
|
devel
|
enhancement
|
normal
|
arb7.x
|
| #173 |
field conversion in merge tool
|
new
|
devel
|
enhancement
|
normal
|
|
| #188 |
remove hardcoded limit in ACI
|
new
|
devel
|
defect
|
normal
|
|
| #191 |
Some files in genbank format introduce multiple entries in DB field "nuc_nr" when imported with filter "genbank_silva.ift"
|
new
|
devel
|
defect
|
normal
|
|
| #205 |
enhance multiprobing interface
|
new
|
devel
|
enhancement
|
normal
|
|
| #206 |
multi selection boxes
|
new
|
devel
|
enhancement
|
normal
|
|
| #207 |
bootstrap transfer
|
new
|
devel
|
enhancement
|
normal
|
|
| #208 |
Filter RAxML output
|
new
|
devel
|
defect
|
normal
|
|
| #210 |
auto-sense submenus
|
assigned
|
epruesse
|
enhancement
|
normal
|
|
| #212 |
Feature request: Search next relatives of Listed Species
|
new
|
devel
|
enhancement
|
normal
|
arb7.x
|
| #229 |
sequence import number not reset
|
new
|
devel
|
defect
|
normal
|
|
| #240 |
redesign query and dbScanner
|
new
|
westram
|
enhancement
|
normal
|
|
| #245 |
ARB Genbank export for nucleotides
|
new
|
devel
|
defect
|
normal
|
|
| #250 |
import/export for secondary structures
|
new
|
devel
|
task
|
normal
|
|
| #252 |
Create species from consensus fails under certain conditions
|
new
|
devel
|
defect
|
normal
|
|
| #254 |
fold/unfold all groups in edit4
|
new
|
devel
|
enhancement
|
normal
|
arb7.x
|
| #255 |
PHYML bootstrap value bug
|
new
|
devel
|
defect
|
normal
|
|
| #256 |
Fix multiple tree view
|
new
|
devel
|
misbehavior
|
normal
|
arb7.x
|
| #257 |
Horizontal Split-View in ED4
|
new
|
devel
|
enhancement
|
normal
|
|
| #260 |
built PT server from marked
|
new
|
devel
|
enhancement
|
normal
|
|
| #262 |
Simplify resolving field-type conflicts
|
new
|
devel
|
enhancement
|
normal
|
|
