Opened 12 years ago

Last modified 3 years ago

#253 new enhancement

inconsistent distance matrix export formats in ARB

Reported by: guest Owned by: devel
Priority: major Milestone: arb7.x
Component: ARB_DIST Version: arb-6.x
Keywords: distance matrix, export, decimal Cc: kbseah@…, trichter@…


Export of distance matrix in ARB can be in Phylip, TSV, or "readable" formats. However, distance values in Phylip format use "." as decimal point, and in TSV format use "," as decimal point. Also, TSV export gives values as percentage, whereas Phylip export gives it as a decimal fraction.

Could they be made consistent? I.e. all numbers as decimal fractions, with "." as decimal marker, and to same degree of rounding?

Thank you!

Change History (5)

comment:1 Changed 10 years ago by westram

  • Cc trichter@… added
  • Component changed from !NoIdea to ARB_DIST
  • Milestone set to arb6.1
  • Priority changed from normal to major
  • Version set to arb-6.0.2

requested by Tim in arb_users:

  1. Is it possible to change the default delimiter in the txt output from

"," to "."? I am running ARB 6 under ubuntu. It would make things much more convenient when processing the txt.files with R or excel.

comment:2 Changed 9 years ago by westram

  • Milestone changed from arb6.1 to arb6.2

comment:3 Changed 7 years ago by westram

  • Milestone changed from arb6.2 to arb6.x

Ticket retargeted after milestone deleted

comment:4 Changed 3 years ago by westram

  • Milestone changed from arb6.x to arb7.x

Milestone renamed

comment:5 Changed 3 years ago by westram

  • Version changed from arb-6.0.2 to arb-6.x

unify tickets for all 6.x versions.

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