Opened 17 years ago
Last modified 11 years ago
#86 new defect
undo after "destroy group" does not recover the group name; ARB crashes after a subsequent try to rename the group
Reported by: | meierh | Owned by: | devel |
---|---|---|---|
Priority: | major | Milestone: | |
Component: | Library (DB) | Version: | SVN |
Keywords: | group destroy undo rename | Cc: |
Description
When I destroy a group (group—>right click on inner node; destroy), and perform an "undo" errors occurs:
case1: I destroyed group "Bacteria":
- strange group name (#IGROUP Mrö31) +
- ARB-Message: ARB is most likely unstable now (due to this error). If you've made changes to the database, consider to save it using a different name. Try to fix the cause of the error and restart ARB. 16:39.28 Internal ARB Error: ARB ERROR: Internal Error: Cannot uncompress data of field
'group_name'
- Rename Group works
case 2: I destroyed the group Firmicutes
- ARB-Message: 16:50.19 ARB ERROR: in 'taxonomy(1)': while applying 'taxonomy(1)' to : Group without 'group_name' entry
- Error Message occurs as group name in the : "<error: ARB ERROR: in 'taxonomy(1)': while applying…."
- ARB crashes with SegFault?, when I try to rename the group
Change History (7)
comment:1 Changed 17 years ago by meierh
- Component changed from ARB to ARB_NTREE
comment:2 Changed 17 years ago by meierh
comment:3 Changed 16 years ago by westram
- similar effect, when group info is moved to a different node and then applying undo:
- group name disappears
- saving results in unloadable (GB_STRING_SHRT-; "Unknown -type 0"; this is already fixed in CVS!)
comment:4 Changed 16 years ago by westram
- Component changed from ARB_NTREE to DB
comment:5 Changed 15 years ago by meierh
- Version changed from stable-2007 to CVS
This effect is not database specific. Occurs too with "SSURef_96_SILVA_04_10_08_opt.arb" and "SSURef_98_SILVA_20_03_09_opt.arb". It occurs just for some groups been destroyed and tried to become restored by pressing the "undo"-button (e.g. for Bacteria, but not for Archaea). 'Group-size-dependant?
comment:6 Changed 11 years ago by westram
might get fixed by #496
comment:7 Changed 11 years ago by westram
to reproduce this with demo.arb follow these instructions
Test-Database: SSURef_92_SILVA_26_09_07_opt.arb