Opened 12 years ago
Last modified 8 years ago
#255 new defect
PHYML bootstrap value bug
| Reported by: | guest | Owned by: | devel |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | no idea | Version: | |
| Keywords: | Cc: |
Description (last modified by westram)
When performing bootstrapping with PHYML (currently only possible in interactive mode):
- the resulting
contains bootstrap values as branchlengths
- these bootstrap values are absolute (should to be relative)
To fix this 
, add bootstrapping option to ARB interface (by implementing #128) .
Original report from Adrian:
I just noticed a minor Bug with the bootstrap value in ARB. When you are creating a with Phylm Maximum likelihood and a certain amount of Bootstrap the value you will have on each node afterward will be the number of with this node and not a percentage value.
For example if I set a bootstrap of 33; I won't have any values over 33% and if I set a bootstrap of 1000 I will have nice over the top values.
It's not that important, I can still calculate the normal value (Or stick to 100 bootstrap) But I thought it will be good to be mentioned.
Change History (1)
comment:1 Changed 8 years ago by westram
- Description modified (diff)
- Summary changed from Bootstrap value bug to PHYML bootstrap value bug
