Opened 11 years ago

Last modified 9 years ago

#59 new defect

crash when merging DBs with concatenated alignments

Reported by: westram Owned by: devel
Priority: major Milestone:
Component: ARB_NTREE Version: SVN
Keywords: Cc:

Description (last modified by westram)

.. konkatenierte Datenbanken abzugleichen.

Beim merge versuch von

  • pop:/pop1/wl/prot/core_genes_final.arb und
  • pop:/pop1/wl/prot/core_sc_wl.arb

kommts zu Absturz (s. u.). Liegt wohl an den konkatenierten acc- Einträgen (TOO LONG). Ist nicht dringend, hab das Problem durch Kürzen der Einträge gelöst. Seltsam erscheint mir nur, dass 'generate new names' mit den einzelnen Datenbanken ohne Fehlermeldung durchläuft…

wl/prot> arb
Using ARBHOME='/usr/arb'
Please wait while the program ARB is starting .....
wl/prot> ARB: Loading '.arb_prop/ntree.arb'
ARB: Loading '/usrdat/wl/ludwig/.arb_prop/ntree.arb' done

Font size 16 not found, using larger 17 point
ARB: Loading '/pop1/wl/prot/core_genes_final.arb'
ARB: no FastLoad File '/pop1/wl/prot/core_genes_final.ARM' found: 
loading entire database
ARB: Loading '/pop1/wl/prot/core_genes_final.arb' done

ARB: Loading '/pop1/wl/prot/core_sc_wl.arb'
ARB: no FastLoad File '/pop1/wl/prot/core_sc_wl.ARM' found: loading 
entire database
ARB: Loading '/pop1/wl/prot/core_sc_wl.arb' done

No changes to ARB_name_server data.
AISC_SET_ERROR: ARG 8: STRING '{HbcS2092} {HbcS2076} ARB_GENE_B3B1E28D 
{HbcS2084} ARB_GENE_3E380EF3 {HbcS2087} ARB_GENE_1D5595FE {HbcS2089} 
ARB_GENE_14EB7263 {HbcS2081} ARB_GENE_A02CDEED {HbcS2082} 
ARB_GENE_FF378486 {HbcS2079} ARB_GENE_49299F89 {HbcS2080} 
ARB_GENE_FBCF682F {HbcS2091} ARB_GENE_6F4460B0 {HbcS2078} 
ARB_GENE_13E7090 {HbcS2088} ARB_GENE_2B9F2F92 {HbcSal15} 
ARB_GENE_3F211381 {HbcS2086} ARB_GENE_8B7BC3D {HbcS2085} 
ARB_GENE_B10A341D {HbcS2090} ARB_GENE_3127F007 {HbcS2077} 
ARB_GENE_A7AF972C {HbcS2094} ARB_GENE_6CF4BA06 {HbcS2095} {HbcS2092} 
{HbcS2076} ARB_GENE_B3B1E28D {HbcS2084} ARB_GENE_3E380EF3 {HbcS2087} 
ARB_GENE_1D5595FE {HbcS2089} ARB_GENE_14EB7263 {HbcS2081} 
ARB_GENE_A02CDEED {HbcS2082} ARB_GENE_FF378486 {HbcS2079} 
ARB_GENE_49299F89 {HbcS2080} ARB_GENE_FBCF682F {HbcS2091} 
ARB_GENE_6F4460B0 {HbcS2078} ARB_GENE_13E7090 {HbcS2088} 
ARB_GENE_2B9F2F92 {HbcSal15} ARB_GENE_3F211381 {HbcS2086} 
ARB_GENE_8B7BC3D {HbcS2085} ARB_GENE_B10A341D {HbcS2090} 
ARB_GENE_3127F007 {HbcS2077} ARB_GENE_A7AF972C {HbcS2093} 
ARB_GENE_1D54E494 {HbcS2093} ARB_GENE_1D54E494' TOO LONG
No changes to ARB_name_server data.
/usr/arb/bin/arb: line 138: 10250 Segmentation fault      arb_ntree $args
ARB done

Change History (1)

comment:1 Changed 9 years ago by westram

  • Description modified (diff)
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