| 1 | # -------------------------------------------------------------------------------- |
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| 2 | |
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| 3 | ifeq ($(ISINA),1) |
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| 4 | ARCH_SINA_NO_DEPENDS = SINA/SINA.dummy |
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| 5 | else |
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| 6 | ARCH_SINA_NO_DEPENDS = |
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| 7 | endif |
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| 8 | |
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| 9 | # -------------------------------------------------------------------------------- |
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| 10 | |
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| 11 | ARCHS_COMMON_DEPENDS = \ |
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| 12 | CLUSTAL/CLUSTAL.dummy \ |
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| 13 | SUPPORT/SUPPORT.dummy \ |
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| 14 | AxML/AxML.dummy \ |
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| 15 | |
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| 16 | ARCHS_COMMON_NO_DEPENDS = \ |
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| 17 | PHYML20130708/PHYML20130708.dummy \ |
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| 18 | RAxML8/RAxML8.dummy \ |
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| 19 | SATIVA/SATIVA.dummy \ |
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| 20 | $(ARCH_SINA_NO_DEPENDS) \ |
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| 21 | |
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| 22 | # -------------------------------------------------------------------------------- |
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| 23 | # If a package is available as debian package it should go here |
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| 24 | # |
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| 25 | # Note: I'm not sure whether this is a good idea. Due to limited manpower it often takes |
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| 26 | # longer until ARB works with newer (incompatible) versions of these tools. --ralf |
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| 27 | |
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| 28 | ARCHS_NON_DEBIAN_DEPENDS = \ |
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| 29 | CLUSTALW/CLUSTALW.dummy \ |
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| 30 | FASTDNAML/FASTDNAML.dummy \ |
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| 31 | MrBAYES/MrBAYES.dummy \ |
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| 32 | PHYLIP/PHYLIP.dummy \ |
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| 33 | PHYML/PHYML.dummy \ |
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| 34 | RAxML/RAxML.dummy \ |
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| 35 | TREEPUZZLE/TREEPUZZLE.dummy \ |
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| 36 | |
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| 37 | ARCHS_NON_DEBIAN_NO_DEPENDS = \ |
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| 38 | FASTTREE/FASTTREE.dummy \ |
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| 39 | MAFFT/MAFFT.dummy \ |
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| 40 | MUSCLE/MUSCLE.dummy \ |
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| 41 | PROBCONS/PROBCONS.dummy \ |
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| 42 | |
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| 43 | # -------------------------------------------------------------------------------- |
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| 44 | |
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| 45 | ifeq ($(DEBIAN),1) |
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| 46 | ARCHS_DEPENDS = $(ARCHS_COMMON_DEPENDS) |
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| 47 | ARCHS_NO_DEPENDS = $(ARCHS_COMMON_NO_DEPENDS) |
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| 48 | else |
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| 49 | ARCHS_DEPENDS = $(ARCHS_COMMON_DEPENDS) $(ARCHS_NON_DEBIAN_DEPENDS) |
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| 50 | ARCHS_NO_DEPENDS = $(ARCHS_COMMON_NO_DEPENDS) $(ARCHS_NON_DEBIAN_NO_DEPENDS) |
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| 51 | endif |
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| 52 | |
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| 53 | ARCHS=$(ARCHS_DEPENDS) $(ARCHS_NO_DEPENDS) |
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| 54 | |
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| 55 | # Allow disabling build of packages individually via environment variable |
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| 56 | ARB_BUILD_SKIP_PKGS?="" |
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| 57 | ARCHS:=$(filter-out $(patsubst %,%/%.dummy,$(ARB_BUILD_SKIP_PKGS)), $(ARCHS)) |
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| 58 | |
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| 59 | # -------------------------------------------------------------------------------- |
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| 60 | # modify cflags for submakefiles |
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| 61 | |
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| 62 | RAISE_WARNINGS=0# no warnings in this subtree |
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| 63 | UNIT_TESTS=0# no tests in this subtree |
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| 64 | |
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| 65 | sub_cflags:=$(cflags) |
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| 66 | |
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| 67 | ifeq ('$(RAISE_WARNINGS)','0') |
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| 68 | sub_cflags:=$(subst -W -Wall,-w,$(sub_cflags)) |
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| 69 | endif |
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| 70 | ifeq ('$(UNIT_TESTS)','0') |
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| 71 | sub_cflags:=$(subst -DUNIT_TESTS,,$(sub_cflags)) |
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| 72 | endif |
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| 73 | |
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| 74 | # skip vectorization info |
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| 75 | sub_cflags:=$(subst -fopt-info-vec-missed , ,$(sub_cflags)) |
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| 76 | sub_cflags:=$(subst -fopt-info-vec , ,$(sub_cflags)) |
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| 77 | sub_cflags:=$(subst -fopt-info , ,$(sub_cflags)) |
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| 78 | |
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| 79 | # skip coverage support |
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| 80 | sub_cflags:=$(subst -ftest-coverage , ,$(sub_cflags)) |
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| 81 | sub_cflags:=$(subst -fprofile-arcs , ,$(sub_cflags)) |
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| 82 | |
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| 83 | # note the above substs do not affect ALL subdirs. see also manual changes to: |
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| 84 | # - MrBAYES/mrbayes_3.2.1/Makefile |
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| 85 | # - PROBCONS/probcons/Makefile |
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| 86 | # - FASTTREE/Makefile |
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| 87 | # - SATIVA/Makefile |
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| 88 | # - MAFFT/Makefile |
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| 89 | |
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| 90 | # -------------------------------------------------------------------------------- |
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| 91 | |
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| 92 | $(MAIN): |
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| 93 | ifeq ('$(RAISE_WARNINGS)','0') |
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| 94 | @echo ----------------- non-ARB code: warnings disabled |
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| 95 | endif |
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| 96 | $(MAKE) $(ARCHS) |
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| 97 | ifeq ('$(RAISE_WARNINGS)','0') |
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| 98 | @echo ----------------- warnings enabled again |
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| 99 | endif |
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| 100 | |
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| 101 | depends: $(ARCHS_DEPENDS:.dummy=.depend) |
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| 102 | |
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| 103 | clean: $(ARCHS:.dummy=.clean) |
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| 104 | |
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| 105 | %.depend: |
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| 106 | @cp -p $(@D)/Makefile $(@D)/Makefile.old # save old Makefile |
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| 107 | @$(MAKE) -C $(@D) -r depends |
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| 108 | @grep "^# DO NOT DELETE" $(@D)/Makefile >/dev/null || \ |
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| 109 | (echo "$(@D)/Makefile:666: Error: No dependencies in $(@D)/Makefile"; false) # check whether sub Makefile has dependencies |
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| 110 | @$(ARBHOME)/SOURCE_TOOLS/fix_depends.pl "(from GDE)" < $(@D)/Makefile > $(@D)/Makefile.2 |
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| 111 | @mv $(@D)/Makefile.old $(@D)/Makefile # restore old Makefile |
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| 112 | @$(ARBHOME)/SOURCE_TOOLS/mv_if_diff $(@D)/Makefile.2 $(@D)/Makefile # update Makefile if changed |
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| 113 | |
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| 114 | %.dummy: |
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| 115 | +@( \ |
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| 116 | (( \ |
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| 117 | echo "$(SEP) Make $(@D)"; \ |
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| 118 | $(MAKE) -C $(@D) -r \ |
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| 119 | "ARB = yes" \ |
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| 120 | "MAIN = $(@F:.dummy=.a)" \ |
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| 121 | "cflags = $(sub_cflags) -DIN_ARB_$(@D:/=)" && \ |
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| 122 | echo "$(SEP) Make $(@D) [done]"; \ |
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| 123 | ) >$(@D).$$ID.log 2>&1 && (cat $(@D).$$ID.log;rm $(@D).$$ID.log)) || (cat $(@D).$$ID.log;rm $(@D).$$ID.log;false)) |
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| 124 | |
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| 125 | %.clean: |
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| 126 | +@$(MAKE) -C $(@D) \ |
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| 127 | "ARB = yes" \ |
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| 128 | clean |
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| 129 | |
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| 130 | %.proto: |
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| 131 | @$(MAKE) -C $(@D) \ |
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| 132 | proto |
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| 133 | |
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| 134 | # the end of the above command avoids that the output of parallel make calls gets mixed up |
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| 135 | |
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| 136 | # DO NOT DELETE |
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| 137 | |
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| 138 | # Do not add dependencies manually - use 'make depend' in $ARBHOME |
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| 139 | # For formatting issues see SOURCE_TOOLS/fix_depends.pl (from main) |
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