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5 | **phyml-manual.tex |
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6 | (./phyml-manual.tex |
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397 | [3] |
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398 | LaTeX Font Info: Try loading font information for OMS+cmr on input line 60. |
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399 | |
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400 | (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd |
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401 | File: omscmr.fd 1999/05/25 v2.5h Standard LaTeX font definitions |
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402 | ) |
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404 | (Font) Font shape `OMS/cmsy/m/n' tried instead on input line 60. |
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405 | LaTeX Font Info: Font shape `OMS/cmr/m/n' in size <12> not available |
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406 | (Font) Font shape `OMS/cmsy/m/n' tried instead on input line 74. |
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407 | [4 |
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409 | ] [5 |
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411 | ] |
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412 | Underfull \hbox (badness 1552) in paragraph at lines 188--196 |
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413 | []\OT1/cmr/m/n/12 This fea-ture of PhyML re-lies on the MPI (Mes-sage Pass-ing |
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414 | In- |
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415 | [] |
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419 | \OT1/cmr/m/n/12 on it. In case MPI is not in-stalled, you can dowload it from |
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420 | [] |
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421 | |
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422 | [6] [7] [8] [9] [10] [11] [12] |
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423 | Missing character: There is no â in font cmr12! |
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424 | Missing character: There is no in font cmr12! |
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425 | Missing character: There is no in font cmr12! |
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426 | [13] |
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427 | Underfull \hbox (badness 10000) in paragraph at lines 489--495 |
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428 | \OT1/cmtt/m/n/12 | Dayhoff | DCMut | RtREV | CpREV | VT | Blosum62 | |
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429 | [] |
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433 | []\OT1/cmtt/m/n/10.95 ((seq1:0.03,seq2:0.01):0.04,(seq3:0.01,(seq4:0.2,seq5:0.0 |
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938 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 969--969 |
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943 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 969--969 |
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968 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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983 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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988 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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993 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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998 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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1003 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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1008 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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1013 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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1018 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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1023 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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1033 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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1038 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 970--970 |
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1039 | []|\OT1/cmr/m/n/6 1.61| |
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1043 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1048 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1053 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1054 | []|\OT1/cmr/m/n/6 2.03| |
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1058 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1063 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1068 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1069 | []|\OT1/cmr/m/n/6 0.86| |
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1073 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1074 | []|\OT1/cmr/m/n/6 0.82| |
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1078 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1079 | []|\OT1/cmr/m/n/6 0.23| |
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1083 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1088 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1089 | []|\OT1/cmr/m/n/6 1.46| |
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1093 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1094 | []|\OT1/cmr/m/n/6 0.33| |
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1098 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1099 | []|\OT1/cmr/m/n/6 1.39| |
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1103 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1108 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1113 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1114 | []|\OT1/cmr/m/n/6 0.80| |
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1118 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 971--971 |
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1119 | []|\OT1/cmr/m/n/6 4.38| |
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1123 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1124 | []|\OT1/cmr/m/n/6 0.11| |
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1128 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1129 | []|\OT1/cmr/m/n/6 1.16| |
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1133 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1134 | []|\OT1/cmr/m/n/6 0.07| |
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1138 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1139 | []|\OT1/cmr/m/n/6 0.13| |
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1143 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1144 | []|\OT1/cmr/m/n/6 0.72| |
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1148 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1149 | []|\OT1/cmr/m/n/6 0.22| |
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1153 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1154 | []|\OT1/cmr/m/n/6 0.16| |
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1158 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1159 | []|\OT1/cmr/m/n/6 0.34| |
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1163 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1164 | []|\OT1/cmr/m/n/6 0.26| |
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1168 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1169 | []|\OT1/cmr/m/n/6 0.21| |
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1173 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1174 | []|\OT1/cmr/m/n/6 0.67| |
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1178 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1179 | []|\OT1/cmr/m/n/6 0.14| |
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1183 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1184 | []|\OT1/cmr/m/n/6 0.52| |
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1188 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1189 | []|\OT1/cmr/m/n/6 1.53| |
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1193 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1194 | []|\OT1/cmr/m/n/6 0.14| |
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1198 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1199 | []|\OT1/cmr/m/n/6 0.52| |
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1203 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 972--972 |
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1204 | []|\OT1/cmr/m/n/6 0.11| |
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1208 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1209 | []|\OT1/cmr/m/n/6 0.24| |
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1213 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1214 | []|\OT1/cmr/m/n/6 0.38| |
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1218 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1219 | []|\OT1/cmr/m/n/6 1.09| |
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1223 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1224 | []|\OT1/cmr/m/n/6 0.33| |
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1228 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1229 | []|\OT1/cmr/m/n/6 0.54| |
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1233 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1234 | []|\OT1/cmr/m/n/6 0.23| |
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1238 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1239 | []|\OT1/cmr/m/n/6 0.20| |
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1243 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1244 | []|\OT1/cmr/m/n/6 0.10| |
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1248 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1249 | []|\OT1/cmr/m/n/6 3.87| |
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1253 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1254 | []|\OT1/cmr/m/n/6 0.42| |
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1258 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1259 | []|\OT1/cmr/m/n/6 0.40| |
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1263 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1264 | []|\OT1/cmr/m/n/6 0.13| |
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1268 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1269 | []|\OT1/cmr/m/n/6 0.43| |
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1273 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1274 | []|\OT1/cmr/m/n/6 6.45| |
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1278 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1279 | []|\OT1/cmr/m/n/6 0.22| |
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1283 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1284 | []|\OT1/cmr/m/n/6 0.79| |
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1288 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1289 | []|\OT1/cmr/m/n/6 0.29| |
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1293 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 973--973 |
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1294 | []|\OT1/cmr/m/n/6 2.49| |
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1298 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1299 | []|\OT1/cmr/m/n/6 2.01| |
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1303 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1304 | []|\OT1/cmr/m/n/6 0.25| |
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1308 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1309 | []|\OT1/cmr/m/n/6 0.20| |
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1313 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1314 | []|\OT1/cmr/m/n/6 0.15| |
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1318 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1319 | []|\OT1/cmr/m/n/6 1.00| |
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1323 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1324 | []|\OT1/cmr/m/n/6 0.30| |
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1328 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1329 | []|\OT1/cmr/m/n/6 0.59| |
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1333 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1334 | []|\OT1/cmr/m/n/6 0.19| |
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1338 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1339 | []|\OT1/cmr/m/n/6 0.12| |
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1343 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1344 | []|\OT1/cmr/m/n/6 7.82| |
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1348 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1349 | []|\OT1/cmr/m/n/6 1.80| |
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1353 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1354 | []|\OT1/cmr/m/n/6 0.31| |
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1358 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1359 | []|\OT1/cmr/m/n/6 2.06| |
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1363 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1364 | []|\OT1/cmr/m/n/6 0.65| |
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1368 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1369 | []|\OT1/cmr/m/n/6 0.31| |
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1373 | Overfull \hbox (3.72147pt too wide) in paragraph at lines 974--974 |
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1374 | []|\OT1/cmr/m/n/6 0.23| |
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