source: branches/ali/GDE/RAxML8/Makefile

# Wrapper to build RAxML versions

# _PORTABLE_PTHREADS in axml.c to get pthread pinning on linux
# use approx 1 thread per 500bp

# Versions of RAxML to build
VERSIONS:=SSE3.PTHREADS PTHREADS

# AVX needs gcc >= 4.6.0
ifeq ("$(USE_GCC_46_OR_HIGHER)", "yes")
  VERSIONS+=AVX.PTHREADS
endif

TARFILE=$(wildcard standard-RAxML-8.*.*gz)

ifeq ($(DARWIN),1)
  MAKE_SUFFIX=mac
else
  MAKE_SUFFIX=gcc
endif

RAXML_BIN=$(ARBHOME)/bin/raxmlHPC8-

## targets called by "upsteam makefile":

all: install


clean:
        rm -rf builddir.*
        rm -f $(RAXML_BIN)*
        rm -f unpack.*.stamp

wantNoWindowsExecutables:
        find . -name "WindowsExecutables*" -type d -exec rm -r {} \; || true

## internal targets

OBSOLETE_MENU=$(ARBHOME)/lib/gde/raxml8.menu

install: build
        cp arb_raxml8.sh $(ARBHOME)/bin
        chmod a+x $(ARBHOME)/bin/arb_raxml8.sh
        test ! -e $(OBSOLETE_MENU) || rm $(OBSOLETE_MENU)

build:  require_tarball $(VERSIONS:%=$(RAXML_BIN)%)
        $(MAKE) wantNoWindowsExecutables

require_tarball:
ifeq ($(TARFILE),)
        $(error Failed to detect RAxML tarball)
endif

# (MAKEFLAGS need to be unset as ARB sets "-r", suppressing built-in rules,
#  which are needed by RAxML)

$(RAXML_BIN)%: unpack.%.stamp
        MAKEFLAGS= $(MAKE) -C $(<:unpack.%.stamp=builddir.%) -f Makefile.$(@:$(RAXML_BIN)%=%).$(MAKE_SUFFIX)
        cp $(<:unpack.%.stamp=builddir.%)/raxmlHPC-* $@

unpack.%.stamp: require_tarball $(TARFILE)
        (DIR=$(@:unpack.%.stamp=builddir.%); \
        rm -rf $$DIR &&\
        mkdir $$DIR &&\
        tar -C $$DIR --strip-components=1 -xzf $(TARFILE) &&\
        arb_sed -i 's/-march=native//' $$DIR/Makefile*)
        touch $@ -r $(TARFILE)

%.stamp:
        echo $@

# prevent make from deleting intermediate targets:
.SECONDARY:

.PHONY: clean all