| 1 | # Wrapper to build RAxML versions |
|---|
| 2 | |
|---|
| 3 | # _PORTABLE_PTHREADS in axml.c to get pthread pinning on linux |
|---|
| 4 | # use approx 1 thread per 500bp |
|---|
| 5 | |
|---|
| 6 | # Versions of RAxML to build |
|---|
| 7 | VERSIONS:=SSE3.PTHREADS PTHREADS |
|---|
| 8 | |
|---|
| 9 | # AVX needs gcc >= 4.6.0 |
|---|
| 10 | ifeq ("$(USE_GCC_46_OR_HIGHER)", "yes") |
|---|
| 11 | VERSIONS+=AVX.PTHREADS |
|---|
| 12 | endif |
|---|
| 13 | |
|---|
| 14 | TARFILE=sativa-RAxML-8.2.3-patched.tar.gz |
|---|
| 15 | |
|---|
| 16 | ifeq ($(DARWIN),1) |
|---|
| 17 | MAKE_SUFFIX=mac |
|---|
| 18 | else |
|---|
| 19 | MAKE_SUFFIX=gcc |
|---|
| 20 | endif |
|---|
| 21 | |
|---|
| 22 | RAXML_BIN=$(ARBHOME)/bin/raxmlHPC8-sativa- |
|---|
| 23 | |
|---|
| 24 | ## targets called by "upsteam makefile": |
|---|
| 25 | |
|---|
| 26 | all: install |
|---|
| 27 | |
|---|
| 28 | clean_local: |
|---|
| 29 | rm -rf builddir.* |
|---|
| 30 | rm -f $(RAXML_BIN)* |
|---|
| 31 | rm -f unpack.*.stamp |
|---|
| 32 | |
|---|
| 33 | ## internal targets |
|---|
| 34 | |
|---|
| 35 | OBSOLETE_MENU=$(ARBHOME)/lib/gde/sativa.menu |
|---|
| 36 | |
|---|
| 37 | install: build |
|---|
| 38 | cp arb_sativa.pl $(ARBHOME)/bin |
|---|
| 39 | chmod a+x $(ARBHOME)/bin/arb_sativa.pl |
|---|
| 40 | cp arb_raxml8_sativa.sh $(ARBHOME)/bin |
|---|
| 41 | chmod a+x $(ARBHOME)/bin/arb_raxml8_sativa.sh |
|---|
| 42 | test ! -e $(OBSOLETE_MENU) || rm $(OBSOLETE_MENU) |
|---|
| 43 | find sativa -path "*.svn" -prune -o -type d -exec mkdir -p $(ARBHOME)/lib/{} \; |
|---|
| 44 | find sativa -path "*.svn" -prune -o -type f -exec cp -p {} $(ARBHOME)/lib/{} \; |
|---|
| 45 | # ln -s $(ARBHOME)/bin $(ARBHOME)/bin/sativa/epac/bin |
|---|
| 46 | |
|---|
| 47 | uninstall: |
|---|
| 48 | rm -f $(ARBHOME)/bin/arb_sativa.pl |
|---|
| 49 | rm -f $(ARBHOME)/bin/arb_raxml8_sativa.sh |
|---|
| 50 | rm -rf $(ARBHOME)/lib/sativa |
|---|
| 51 | rm -f $(ARBHOME)/lib/gde/sativa.menu |
|---|
| 52 | |
|---|
| 53 | clean: clean_local uninstall |
|---|
| 54 | |
|---|
| 55 | build: $(VERSIONS:%=$(RAXML_BIN)%) |
|---|
| 56 | |
|---|
| 57 | # (MAKEFLAGS need to be unset as ARB sets "-r", suppressing built-in rules, |
|---|
| 58 | # which are needed by RAxML) |
|---|
| 59 | |
|---|
| 60 | $(RAXML_BIN)%: unpack.%.stamp Makefile |
|---|
| 61 | ( MAKEFLAGS= $(MAKE) -C $(<:unpack.%.stamp=builddir.%) -f Makefile.$(@:$(RAXML_BIN)%=%).$(MAKE_SUFFIX) ) 2>&1 | grep -vi ' warning: ' |
|---|
| 62 | cp $(<:unpack.%.stamp=builddir.%)/raxmlHPC-* $@ |
|---|
| 63 | |
|---|
| 64 | unpack.%.stamp: $(TARFILE) |
|---|
| 65 | (DIR=$(@:unpack.%.stamp=builddir.%); \ |
|---|
| 66 | rm -rf $$DIR &&\ |
|---|
| 67 | mkdir $$DIR &&\ |
|---|
| 68 | tar -C $$DIR --strip-components=1 -xzf $(TARFILE) &&\ |
|---|
| 69 | arb_sed -i 's/-march=native//' $$DIR/Makefile*) |
|---|
| 70 | touch $@ -r $(TARFILE) |
|---|
| 71 | |
|---|
| 72 | %.stamp: |
|---|
| 73 | echo $@ |
|---|
| 74 | |
|---|
| 75 | # prevent make from deleting intermediate targets: |
|---|
| 76 | .SECONDARY: |
|---|
| 77 | |
|---|
| 78 | .PHONY: clean all install build uninstall clean_local |
|---|
