source: branches/ali/SH/arb_repair

#!/bin/bash

main() {
    if [ -z "$2" ]; then
        echo "Usage: arb_repair database outputdatabase [-m] [-r] [-c[tree_xxx]]"
        echo "       -m            create map file too"
        echo "       -r            try to repair invalid database"
        echo "       -c[tree_xxx]  optimize database using tree_xxx or largest tree"
    else
        local IN=$1
        local OUT=$2

        shift 2

        local MAPFILE=
        local RECOVER=
        local OPTIMIZE=

        while [ ! -z "$1" ]; do
            if [ "$1" = "-m" ]; then
                MAPFILE=$1
                shift
            else
                if [ "$1" = "-r" ]; then
                    RECOVER=$1
                    shift
                else
                    OPTIMIZE=$1
                    shift
                fi
            fi
        done

        echo "arb_repair: Repairing database $IN .."
        echo ""
        echo "Running 'arb_2_ascii $RECOVER $IN - | arb_2_bin $MAPFILE $RECOVER $OPTIMIZE - $OUT'"
        arb_2_ascii $RECOVER $IN - | arb_2_bin $MAPFILE $RECOVER $OPTIMIZE - $OUT
        ls -al $IN $OUT
    fi
}

main $*