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Last change
on this file was
8930,
checked in by westram, 12 years ago
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- pass result parameters to ClustalV_align by reference (using const for result buffers)
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-
Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
1.2 KB
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| 1 | // =============================================================== // |
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| 2 | // // |
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| 3 | // File : ClustalV.hxx // |
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| 4 | // Purpose : Clustal V // |
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| 5 | // // |
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| 6 | // Coded by Ralf Westram (coder@reallysoft.de) in June 2008 // |
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| 7 | // Institute of Microbiology (Technical University Munich) // |
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| 8 | // http://www.arb-home.de/ // |
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| 9 | // // |
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| 10 | // =============================================================== // |
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| 11 | |
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| 12 | #ifndef CLUSTALV_HXX |
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| 13 | #define CLUSTALV_HXX |
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| 14 | |
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| 15 | #ifndef ARB_ERROR_H |
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| 16 | #include <arb_error.h> |
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| 17 | #endif |
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| 18 | |
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| 19 | ARB_ERROR ClustalV_align(int is_dna, int weighted, |
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| 20 | const char *seq1, int length1, const char *seq2, int length2, |
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| 21 | const int *gapsBefore1, |
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| 22 | int max_seq_length, |
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| 23 | const char*& result1, const char*& result2, int& result_len, int& score); |
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| 24 | void ClustalV_exit(); |
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| 25 | |
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| 26 | int baseMatch(char c1, char c2); |
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| 27 | |
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| 28 | #else |
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| 29 | #error ClustalV.hxx included twice |
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| 30 | #endif // CLUSTALV_HXX |
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