source: branches/ali/SL/FAST_ALIGNER/Makefile

Last change on this file was 18959, checked in by westram, 3 years ago
File size: 5.4 KB
Line 
1# for variables passed from parent makefile see ../../SOURCE_TOOLS/parent_make.txt
2
3.SUFFIXES: .o .cxx .depend
4
5OBJECTS = $(subst .cxx,.o,$(wildcard *.cxx))
6
7$(MAIN): $(OBJECTS)
8        $(LINK_STATIC_LIB) $(MAIN) $(OBJECTS)
9
10.cxx.o:
11        $(A_CXX) $(cflags) $(cxxflags) -c $< $(CXX_INCLUDES) $(POST_COMPILE) $<
12
13clean:
14        rm -f $(OBJECTS) *.a
15
16DEPENDS = $(OBJECTS:.o=.depend)
17depends: $(DEPENDS)
18        @cat $(DEPENDS) | grep -v '^#' >>Makefile
19        @rm $(DEPENDS)
20$(DEPENDS): depend.init
21depend.init:
22        $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies
23.c.depend:
24        $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@
25.cxx.depend:
26        $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@
27
28# DO NOT DELETE
29
30# Do not add dependencies manually - use 'make depend' in $ARBHOME
31# For formatting issues see SOURCE_TOOLS/fix_depends.pl (from SL)
32
33ClustalV.o: ClustalV.hxx
34ClustalV.o: seq_search.hxx
35ClustalV.o: $(ARBHOME)/INCLUDE/arb_assert.h
36ClustalV.o: $(ARBHOME)/INCLUDE/arb_core.h
37ClustalV.o: $(ARBHOME)/INCLUDE/arb_error.h
38ClustalV.o: $(ARBHOME)/INCLUDE/arb_global_defs.h
39ClustalV.o: $(ARBHOME)/INCLUDE/arb_mem.h
40ClustalV.o: $(ARBHOME)/INCLUDE/arb_string.h
41ClustalV.o: $(ARBHOME)/INCLUDE/arbdb_base.h
42ClustalV.o: $(ARBHOME)/INCLUDE/arbtools.h
43ClustalV.o: $(ARBHOME)/INCLUDE/attributes.h
44ClustalV.o: $(ARBHOME)/INCLUDE/aw_base.hxx
45ClustalV.o: $(ARBHOME)/INCLUDE/aw_msg.hxx
46ClustalV.o: $(ARBHOME)/INCLUDE/BI_basepos.hxx
47ClustalV.o: $(ARBHOME)/INCLUDE/cxxforward.h
48ClustalV.o: $(ARBHOME)/INCLUDE/dupstr.h
49ClustalV.o: $(ARBHOME)/INCLUDE/gccver.h
50ClustalV.o: $(ARBHOME)/INCLUDE/smartptr.h
51ClustalV.o: $(ARBHOME)/INCLUDE/test_global.h
52ClustalV.o: $(ARBHOME)/INCLUDE/test_unit.h
53
54fast_aligner.o: ClustalV.hxx
55fast_aligner.o: fast_aligner.hxx
56fast_aligner.o: seq_search.hxx
57fast_aligner.o: $(ARBHOME)/INCLUDE/ad_cb.h
58fast_aligner.o: $(ARBHOME)/INCLUDE/ad_cb_prot.h
59fast_aligner.o: $(ARBHOME)/INCLUDE/ad_prot.h
60fast_aligner.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
61fast_aligner.o: $(ARBHOME)/INCLUDE/arb_assert.h
62fast_aligner.o: $(ARBHOME)/INCLUDE/arb_core.h
63fast_aligner.o: $(ARBHOME)/INCLUDE/arb_defs.h
64fast_aligner.o: $(ARBHOME)/INCLUDE/arb_error.h
65fast_aligner.o: $(ARBHOME)/INCLUDE/arb_global_defs.h
66fast_aligner.o: $(ARBHOME)/INCLUDE/arb_mem.h
67fast_aligner.o: $(ARBHOME)/INCLUDE/arb_msg.h
68fast_aligner.o: $(ARBHOME)/INCLUDE/arb_progress.h
69fast_aligner.o: $(ARBHOME)/INCLUDE/arb_strarray.h
70fast_aligner.o: $(ARBHOME)/INCLUDE/arb_string.h
71fast_aligner.o: $(ARBHOME)/INCLUDE/arb_unit_test.h
72fast_aligner.o: $(ARBHOME)/INCLUDE/arbdb.h
73fast_aligner.o: $(ARBHOME)/INCLUDE/arbdb_base.h
74fast_aligner.o: $(ARBHOME)/INCLUDE/arbdbt.h
75fast_aligner.o: $(ARBHOME)/INCLUDE/arbtools.h
76fast_aligner.o: $(ARBHOME)/INCLUDE/attributes.h
77fast_aligner.o: $(ARBHOME)/INCLUDE/aw_awar.hxx
78fast_aligner.o: $(ARBHOME)/INCLUDE/aw_awar_defs.hxx
79fast_aligner.o: $(ARBHOME)/INCLUDE/aw_awars.hxx
80fast_aligner.o: $(ARBHOME)/INCLUDE/aw_base.hxx
81fast_aligner.o: $(ARBHOME)/INCLUDE/aw_keysym.hxx
82fast_aligner.o: $(ARBHOME)/INCLUDE/aw_msg.hxx
83fast_aligner.o: $(ARBHOME)/INCLUDE/aw_question.hxx
84fast_aligner.o: $(ARBHOME)/INCLUDE/aw_root.hxx
85fast_aligner.o: $(ARBHOME)/INCLUDE/aw_window.hxx
86fast_aligner.o: $(ARBHOME)/INCLUDE/awt_config_manager.hxx
87fast_aligner.o: $(ARBHOME)/INCLUDE/awt_sel_boxes.hxx
88fast_aligner.o: $(ARBHOME)/INCLUDE/awtc_next_neighbours.hxx
89fast_aligner.o: $(ARBHOME)/INCLUDE/BI_basepos.hxx
90fast_aligner.o: $(ARBHOME)/INCLUDE/cb.h
91fast_aligner.o: $(ARBHOME)/INCLUDE/cb_base.h
92fast_aligner.o: $(ARBHOME)/INCLUDE/cbtypes.h
93fast_aligner.o: $(ARBHOME)/INCLUDE/ConfigMapping.h
94fast_aligner.o: $(ARBHOME)/INCLUDE/cxxforward.h
95fast_aligner.o: $(ARBHOME)/INCLUDE/downcast.h
96fast_aligner.o: $(ARBHOME)/INCLUDE/dupstr.h
97fast_aligner.o: $(ARBHOME)/INCLUDE/gccver.h
98fast_aligner.o: $(ARBHOME)/INCLUDE/island_hopping.h
99fast_aligner.o: $(ARBHOME)/INCLUDE/pos_range.h
100fast_aligner.o: $(ARBHOME)/INCLUDE/PT_global_defs.h
101fast_aligner.o: $(ARBHOME)/INCLUDE/RangeList.h
102fast_aligner.o: $(ARBHOME)/INCLUDE/rootAsWin.h
103fast_aligner.o: $(ARBHOME)/INCLUDE/smartptr.h
104fast_aligner.o: $(ARBHOME)/INCLUDE/static_assert.h
105fast_aligner.o: $(ARBHOME)/INCLUDE/stringize.h
106fast_aligner.o: $(ARBHOME)/INCLUDE/test_global.h
107fast_aligner.o: $(ARBHOME)/INCLUDE/test_unit.h
108fast_aligner.o: $(ARBHOME)/INCLUDE/ttypes.h
109
110seq_search.o: seq_search.hxx
111seq_search.o: $(ARBHOME)/INCLUDE/ad_prot.h
112seq_search.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
113seq_search.o: $(ARBHOME)/INCLUDE/arb_assert.h
114seq_search.o: $(ARBHOME)/INCLUDE/arb_core.h
115seq_search.o: $(ARBHOME)/INCLUDE/arb_error.h
116seq_search.o: $(ARBHOME)/INCLUDE/arb_global_defs.h
117seq_search.o: $(ARBHOME)/INCLUDE/arb_mem.h
118seq_search.o: $(ARBHOME)/INCLUDE/arb_msg.h
119seq_search.o: $(ARBHOME)/INCLUDE/arb_strbuf.h
120seq_search.o: $(ARBHOME)/INCLUDE/arb_string.h
121seq_search.o: $(ARBHOME)/INCLUDE/arbdb.h
122seq_search.o: $(ARBHOME)/INCLUDE/arbdb_base.h
123seq_search.o: $(ARBHOME)/INCLUDE/arbdbt.h
124seq_search.o: $(ARBHOME)/INCLUDE/arbtools.h
125seq_search.o: $(ARBHOME)/INCLUDE/attributes.h
126seq_search.o: $(ARBHOME)/INCLUDE/aw_base.hxx
127seq_search.o: $(ARBHOME)/INCLUDE/aw_msg.hxx
128seq_search.o: $(ARBHOME)/INCLUDE/BI_basepos.hxx
129seq_search.o: $(ARBHOME)/INCLUDE/cxxforward.h
130seq_search.o: $(ARBHOME)/INCLUDE/downcast.h
131seq_search.o: $(ARBHOME)/INCLUDE/dupstr.h
132seq_search.o: $(ARBHOME)/INCLUDE/gccver.h
133seq_search.o: $(ARBHOME)/INCLUDE/smartptr.h
134seq_search.o: $(ARBHOME)/INCLUDE/static_assert.h
135seq_search.o: $(ARBHOME)/INCLUDE/stringize.h
136seq_search.o: $(ARBHOME)/INCLUDE/test_global.h
137seq_search.o: $(ARBHOME)/INCLUDE/test_helpers.h
138seq_search.o: $(ARBHOME)/INCLUDE/test_unit.h
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