|
Last change
on this file was
11401,
checked in by westram, 11 years ago
|
- reintegrates '
 ' into 'trunk':
- consensus trees:
- support for merging partial trees ("worked" before, but results were crap; implements #65)
- generated trees are automatically re-rooted and -ordered
- always list source trees in consensus--comment; show info about partial trees
- fixed progress bar
- made GBT_TREE a base class of other classes (implements #31)
- save properties in properties (not in
 )
- new functions 'Remove zombies/marked from ALL trees'
- load/save: layout fixes
- unit tests
- added tests for basic modifications (PARSIMONY)
- performance:
- compute_tree updates information in one traversal
- generators are now capable to generate any type of (w/o needing to copy it once)
- bugfixes:
- NNI (of marked species) was also always performed for colored species
- centered beautify-order is stable now
- improved 'search optimal root'
- adds:
|
|
File size:
1.3 KB
|
| Line | |
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| 1 | [Tue Dec 24 10:57:18 2013: ARB consensus tree build from 1 trees: |
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| 2 | - consense/1/bootstrapped_1.tree |
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| 3 | Tue Dec 24 10:57:18 2013: tree_consense1_single saved to consense/1/consense1_single.tree |
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| 4 | ] |
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| 5 | ( |
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| 6 | ( |
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| 7 | CloProte:0.04424, |
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| 8 | ( |
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| 9 | CloTyrob:0.04432, |
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| 10 | ( |
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| 11 | ( |
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| 12 | CloTetan:0.03360, |
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| 13 | ( |
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| 14 | CloColla:0.03223, |
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| 15 | CloSardi:0.02828 |
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| 16 | ):0.00816 |
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| 17 | ):0.00282, |
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| 18 | ( |
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| 19 | CloCellu:0.03223, |
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| 20 | ( |
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| 21 | CloPerfr:0.02995, |
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| 22 | ( |
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| 23 | CloParap:0.02518, |
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| 24 | ( |
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| 25 | CloBotul:0.01776, |
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| 26 | CloCorin:0.02067 |
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| 27 | ):0.01240 |
|---|
| 28 | ):0.00175 |
|---|
| 29 | ):0.01270 |
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| 30 | ):0.00361 |
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| 31 | ):0.00522 |
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| 32 | ):0.00692 |
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| 33 | ):0.02688, |
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| 34 | ( |
|---|
| 35 | ( |
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| 36 | CrnAlter:0.04598, |
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| 37 | ( |
|---|
| 38 | LccL2279:0.05873, |
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| 39 | StcSaliv:0.05190 |
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| 40 | ):0.01590 |
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| 41 | ):0.00462, |
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| 42 | ( |
|---|
| 43 | ( |
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| 44 | BclGlob2:0.04020, |
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| 45 | ( |
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| 46 | StaAureu:0.00766, |
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| 47 | ( |
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| 48 | StaHaemo:0.00491, |
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| 49 | StaHomin:0.00434 |
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| 50 | ):0.00343 |
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| 51 | ):0.04354 |
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| 52 | ):0.01165, |
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| 53 | ( |
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| 54 | LcbA1923:0.05341, |
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| 55 | ( |
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| 56 | ( |
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| 57 | LcbFruct:0.02150, |
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| 58 | LcbSanfr:0.03225 |
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| 59 | ):0.01134, |
|---|
| 60 | ( |
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| 61 | LcbPont2:0.01442, |
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| 62 | LcbReu40:0.01407 |
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| 63 | ):0.03915 |
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| 64 | ):0.00558 |
|---|
| 65 | ):0.01874 |
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| 66 | ):0.00549 |
|---|
| 67 | ):0.02688 |
|---|
| 68 | ); |
|---|
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