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Last change
on this file was
11815,
checked in by westram, 12 years ago
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- reintegrates 'deb' into 'trunk'
- adds:
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-
Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
2.2 KB
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| 1 | # PHYML 2.4.5 Makefile |
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| 2 | # modified for ARB by Ralf Westram (Jun 2006) |
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| 3 | |
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| 4 | .SUFFIXES: .o .c .h .depend |
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| 5 | |
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| 6 | LIBS = -lm |
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| 7 | PROG = PHYML |
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| 8 | DFLAG = -DUNIX -D$(PROG) |
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| 9 | OBJS = main.o utilities.o optimiz.o lk.o bionj.o models.o free.o options.o simu.o eigen.o |
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| 10 | |
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| 11 | ifndef ARB |
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| 12 | # ---------------------------------------- |
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| 13 | # original compilation |
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| 14 | |
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| 15 | CC = gcc #cc |
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| 16 | CFLAGS = -O4 -fomit-frame-pointer -Wall |
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| 17 | # CFLAGS = -Wall |
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| 18 | # CFLAGS = -g -Wall |
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| 19 | # CFLAGS = -pg -Wall -fprofile-arcs -static |
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| 20 | |
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| 21 | EXEC = phyml |
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| 22 | |
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| 23 | else |
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| 24 | # ---------------------------------------- |
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| 25 | # compilation together with ARB |
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| 26 | |
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| 27 | CC = $(A_CC) |
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| 28 | CFLAGS = $(cflags) -fomit-frame-pointer |
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| 29 | EXEC = $(ARBHOME)/bin/phyml |
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| 30 | |
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| 31 | ifeq ($(DARWIN),1) |
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| 32 | CFLAGS += -fPIC |
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| 33 | endif |
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| 34 | |
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| 35 | # ARBs standard target |
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| 36 | $(MAIN) : $(EXEC) |
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| 37 | |
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| 38 | endif |
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| 39 | |
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| 40 | $(EXEC) : $(OBJS) |
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| 41 | $(CC) -o $(EXEC) $(OBJS) $(LIBS) $(CFLAGS) |
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| 42 | |
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| 43 | clean : |
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| 44 | rm -f $(OBJS) $(EXEC) |
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| 45 | |
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| 46 | .c.o: |
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| 47 | $(CC) $(CFLAGS) $(DFLAG) -c -o $@ $< |
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| 48 | |
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| 49 | ###################################################################################################### |
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| 50 | |
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| 51 | DEPENDS = $(OBJS:.o=.depend) |
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| 52 | depends: $(DEPENDS) |
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| 53 | @cat $(DEPENDS) | grep -v '^#' >>Makefile |
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| 54 | @rm $(DEPENDS) |
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| 55 | $(DEPENDS): depend.init |
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| 56 | depend.init: |
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| 57 | $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies |
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| 58 | .c.depend: |
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| 59 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ |
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| 60 | |
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| 61 | # DO NOT DELETE |
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| 62 | |
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| 63 | # Do not add dependencies manually - use 'make depend' in $ARBHOME |
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| 64 | # For formatting issues see SOURCE_TOOLS/fix_depends.pl (from GDE) |
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| 65 | |
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| 66 | bionj.o: bionj.h |
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| 67 | bionj.o: optimiz.h |
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| 68 | bionj.o: utilities.h |
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| 69 | |
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| 70 | eigen.o: eigen.h |
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| 71 | eigen.o: utilities.h |
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| 72 | |
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| 73 | free.o: free.h |
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| 74 | free.o: utilities.h |
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| 75 | |
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| 76 | lk.o: free.h |
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| 77 | lk.o: lk.h |
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| 78 | lk.o: models.h |
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| 79 | lk.o: optimiz.h |
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| 80 | lk.o: utilities.h |
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| 81 | |
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| 82 | main.o: bionj.h |
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| 83 | main.o: free.h |
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| 84 | main.o: lk.h |
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| 85 | main.o: models.h |
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| 86 | main.o: optimiz.h |
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| 87 | main.o: options.h |
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| 88 | main.o: simu.h |
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| 89 | main.o: utilities.h |
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| 90 | |
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| 91 | models.o: eigen.h |
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| 92 | models.o: free.h |
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| 93 | models.o: models.h |
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| 94 | models.o: utilities.h |
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| 95 | |
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| 96 | optimiz.o: free.h |
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| 97 | optimiz.o: lk.h |
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| 98 | optimiz.o: optimiz.h |
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| 99 | optimiz.o: utilities.h |
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| 100 | |
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| 101 | options.o: free.h |
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| 102 | options.o: models.h |
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| 103 | options.o: options.h |
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| 104 | options.o: utilities.h |
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| 105 | |
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| 106 | simu.o: free.h |
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| 107 | simu.o: lk.h |
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| 108 | simu.o: models.h |
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| 109 | simu.o: optimiz.h |
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| 110 | simu.o: simu.h |
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| 111 | simu.o: utilities.h |
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| 112 | |
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| 113 | utilities.o: bionj.h |
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| 114 | utilities.o: free.h |
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| 115 | utilities.o: lk.h |
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| 116 | utilities.o: models.h |
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| 117 | utilities.o: optimiz.h |
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| 118 | utilities.o: simu.h |
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| 119 | utilities.o: utilities.h |
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